Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,370,890	T→C	V105A (GTG→GCG)	b4533 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,370,890	0	T	C	100.0%	784.9 / NA	239	V105A (GTG→GCG)	b4533	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (107/132); total (107/132)

Only 100 of 245 total aligned reads displayed.

TCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGTGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC  >  NC_000913/2370800‑2370979

tCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGa                                                                                         <  2:4454720/93‑1 (MQ=255)

 cTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGAt                                                                                        <  2:4080064/93‑1 (MQ=255)

  tGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATc                                                                                       >  1:6428106/1‑93 (MQ=255)

   gggTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATcc                                                                                      <  1:3106391/93‑1 (MQ=255)

    ggTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCt                                                                                     <  2:2310156/93‑1 (MQ=255)

      tGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCg                                                                                   >  1:1012981/1‑93 (MQ=255)

      ggACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCg                                                                                   <  1:5814744/92‑1 (MQ=255)

       gACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCgg                                                                                  >  1:4619386/1‑93 (MQ=255)

       gACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCgg                                                                                  >  2:395878/1‑93 (MQ=255)

        aCGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCggg                                                                                 >  2:4525069/1‑93 (MQ=255)

         cGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCgggg                                                                                >  2:1600197/1‑92 (MQ=255)

         cGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGa                                                                                <  1:2294363/93‑1 (MQ=255)

         cGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGa                                                                                <  1:5616761/93‑1 (MQ=255)

         cGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCCATCCTCGGGa                                                                                <  2:3883040/93‑1 (MQ=255)

           ctggctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGt                                                                              <  2:4283265/93‑1 (MQ=255)

            tggctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTa                                                                             >  1:4301487/1‑93 (MQ=255)

            tggctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGCGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTa                                                                             >  1:4087370/1‑93 (MQ=255)

             ggctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGTATTGCGATCCTCGGGAGTAc                                                                            <  2:2756820/93‑1 (MQ=255)

             ggctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTAc                                                                            <  1:328092/93‑1 (MQ=255)

             ggctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTAc                                                                            >  2:4710871/1‑93 (MQ=255)

             ggctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTAc                                                                            >  2:6629275/1‑93 (MQ=255)

             ggctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTAc                                                                            <  1:6218930/93‑1 (MQ=255)

             ggctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTAc                                                                            >  1:505354/1‑93 (MQ=255)

             ggctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTAc                                                                            <  1:5384994/93‑1 (MQ=255)

               ctgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCCGGAGGACgg                                                                          >  2:3539716/1‑93 (MQ=255)

                tgCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGgt                                                                         <  1:4071201/93‑1 (MQ=255)

                 gCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGgtg                                                                        >  1:4812147/1‑93 (MQ=255)

                   aGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTa                                                                      >  1:700631/1‑93 (MQ=255)

                   aGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTa                                                                      >  2:1162380/1‑93 (MQ=255)

                    gTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTaa                                                                     <  2:5086668/93‑1 (MQ=255)

                    gTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTaa                                                                     <  2:383769/93‑1 (MQ=255)

                    gTAAAACCGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTaa                                                                     <  2:2571479/93‑1 (MQ=255)

                     tAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAAt                                                                    <  2:4618560/93‑1 (MQ=255)

                      aaaaCTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATg                                                                   >  2:1861522/1‑93 (MQ=255)

                         aCTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTTGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGc                                                                >  1:2051930/1‑93 (MQ=255)

                         aCTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGc                                                                <  2:2700327/93‑1 (MQ=255)

                         aCTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGc                                                                >  1:3824657/1‑93 (MQ=255)

                          cTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGcc                                                               <  1:3883646/93‑1 (MQ=255)

                          cTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGcc                                                               >  1:2558547/1‑93 (MQ=255)

                           tgtgGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCt                                                              >  2:1544989/1‑93 (MQ=255)

                           tgtgGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCt                                                              <  1:3949473/93‑1 (MQ=255)

                             tgGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGa                                                            >  1:3609005/1‑93 (MQ=255)

                              ggCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTggt                                                           >  1:3491680/1‑91 (MQ=255)

                              ggCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGAt                                                           <  1:2376582/93‑1 (MQ=255)

                                 aCGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGAtgtg                                                        <  1:3648406/93‑1 (MQ=255)

                                  cGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTgg                                                       <  2:6252139/93‑1 (MQ=255)

                                     aCCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGa                                                    <  1:3222991/93‑1 (MQ=255)

                                     aCCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGa                                                    >  2:5721090/1‑93 (MQ=255)

                                        cgTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGatta                                                 <  1:2210046/92‑1 (MQ=255)

                                         gTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGattat                                                >  1:6623533/1‑93 (MQ=255)

                                         gTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGattat                                                >  2:6517131/1‑93 (MQ=255)

                                          tATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGattatt                                               <  2:2543606/93‑1 (MQ=255)

                                          tATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGattatt                                               <  1:2885483/93‑1 (MQ=255)

                                            tCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCa                                             <  1:5921792/93‑1 (MQ=255)

                                             cgccgcGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAg                                            <  1:6344638/93‑1 (MQ=255)

                                              gctgcgTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGc                                           <  2:3088233/90‑1 (MQ=255)

                                              gccgcGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGc                                           >  2:3285731/1‑93 (MQ=255)

                                                    tCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGGACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCatt                                     >  1:4680049/1‑93 (MQ=255)

                                                     cACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCatta                                    <  1:1982063/93‑1 (MQ=255)

                                                     cACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCatta                                    >  1:6049771/1‑93 (MQ=255)

                                                     cACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCatta                                    >  2:5798868/1‑93 (MQ=255)

                                                     cACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGGAATGGGCCTGATGTGGGTATTATTCAGCGTCatta                                    >  2:2434460/1‑93 (MQ=255)

                                                      aCTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCattat                                   <  1:3389235/93‑1 (MQ=255)

                                                      aCTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCattat                                   >  2:3442407/1‑93 (MQ=255)

                                                      aCTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCattat                                   <  1:4539970/93‑1 (MQ=255)

                                                       cTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCattatt                                  <  2:1788955/93‑1 (MQ=255)

                                                       cTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCattatt                                  <  2:2247657/93‑1 (MQ=255)

                                                         ggTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGc                                >  1:2651318/1‑93 (MQ=255)

                                                         ggTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGc                                >  1:313795/1‑93 (MQ=255)

                                                         ggTGTGGGGGGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGc                                >  1:4951480/1‑93 (MQ=255)

                                                          gtgtGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGcc                               <  1:5680169/93‑1 (MQ=255)

                                                           tgtgGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCt                              >  1:716500/1‑93 (MQ=255)

                                                           tgtgGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCt                              <  2:5237866/93‑1 (MQ=255)

                                                            gtgGGGNGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTc                             <  2:722619/93‑1 (MQ=255)

                                                              ggggggGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAg                           >  1:1123738/1‑93 (MQ=255)

                                                              ggggTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAg                           <  1:5134978/93‑1 (MQ=255)

                                                               gggTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGt                          <  2:5620224/93‑1 (MQ=255)

                                                                ggtggtGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGtt                         <  1:669591/93‑1 (MQ=255)

                                                                ggtggtGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGtt                         <  2:5530115/93‑1 (MQ=255)

                                                                 gtggtgTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTg                        <  2:1690531/93‑1 (MQ=255)

                                                                  tGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTgc                       <  2:855826/93‑1 (MQ=255)

                                                                   ggtgTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTgcg                      >  2:4233392/4‑93 (MQ=255)

                                                                   ggtgTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTgcg                      >  2:5842620/4‑93 (MQ=255)

                                                                       ttCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAAt                  >  2:4829497/1‑93 (MQ=255)

                                                                       ttCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAAt                  >  1:6109170/1‑93 (MQ=255)

                                                                       ttCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGGGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAAt                  <  2:6339604/93‑1 (MQ=255)

                                                                          attattGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTaa               >  2:1971514/1‑93 (MQ=255)

                                                                           ttattGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAg              >  1:1213329/1‑93 (MQ=255)

                                                                           ttattGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAg              <  2:1332508/93‑1 (MQ=255)

                                                                           ttattGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAg              >  1:2603180/1‑93 (MQ=255)

                                                                               tGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTg          <  2:2935206/93‑1 (MQ=255)

                                                                                 gcggcATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTggg        <  1:6532022/93‑1 (MQ=255)

                                                                                   ggcATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGtt      <  1:545871/93‑1 (MQ=255)

                                                                                     cATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGtttt    <  2:3233325/93‑1 (MQ=255)

                                                                                      aTTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTg   <  1:5153896/93‑1 (MQ=255)

                                                                                       ttGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgc  >  2:5745167/1‑93 (MQ=255)

                                                                                       ttGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgc  >  2:5442853/1‑93 (MQ=255)

                                                                                       ttGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgc  >  1:2979818/1‑93 (MQ=255)

                                                                                       ttGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgc  >  1:178475/1‑93 (MQ=255)

                                                                                       ttGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTgc  >  2:1681203/1‑93 (MQ=255)

TCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGTGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC  >  NC_000913/2370800‑2370979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGTCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGTGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCG  >  NC_000913/2370798‑2370983

TGTCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCG                                                                                              >  SRR4302536.5548617/1‑94 (MQ=60)

 GTCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGA                                                                                             <  SRR4302536.74205/94‑1 (MQ=60)

  TCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGAT                                                                                            >  SRR4302536.6875757/1‑94 (MQ=60)

   CTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATC                                                                                           >  SRR4302536.6620216/1‑94 (MQ=60)

    TGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGCGATCC                                                                                          >  SRR4302536.2354568/1‑94 (MQ=60)

     GGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCT                                                                                         <  SRR4302536.3197083/94‑1 (MQ=60)

     GGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCT                                                                                         <  SRR4302536.733408/94‑1 (MQ=60)

       GTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCG                                                                                       >  SRR4302536.1042898/1‑94 (MQ=60)

       GTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCG                                                                                       <  SRR4302536.3405526/94‑1 (MQ=60)

        TTACGCTGGCGGCAGTAAACCTGTGGCGCGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCAGTATTGGCGGTATTGCGATCCTCGG                                                                                      <  SRR4302536.4818451/94‑1 (MQ=60)

        TGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGG                                                                                      >  SRR4302536.3969238/1‑94 (MQ=60)

        TGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGG                                                                                      >  SRR4302536.6377421/1‑94 (MQ=60)

        TGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGG                                                                                      >  SRR4302536.4758156/1‑94 (MQ=60)

        TGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGG                                                                                      >  SRR4302536.2785656/1‑94 (MQ=60)

        GGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGG                                                                                      <  SRR4302536.5987962/94‑1 (MQ=60)

          AGGCTGGCTGCAGTAAAACTGTGGCAGGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGA                                                                                    <  SRR4302536.6128531/94‑1 (MQ=60)

           CGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAG                                                                                   <  SRR4302536.2363991/94‑1 (MQ=60)

           CGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAG                                                                                   <  SRR4302536.5783608/94‑1 (MQ=60)

           CGCGGGCTGCAGTAAAACTGTGCCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTAGTGGCGGCATTGCGATCCTCGGGAG                                                                                   <  SRR4302536.2289091/94‑1 (MQ=60)

            GCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGT                                                                                  <  SRR4302536.3307330/94‑1 (MQ=60)

             CTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTA                                                                                 >  SRR4302536.4430095/1‑94 (MQ=60)

             CTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTA                                                                                 >  SRR4302536.4208376/1‑94 (MQ=60)

             CTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGCGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTA                                                                                 >  SRR4302536.4208564/1‑94 (MQ=60)

              TGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTAC                                                                                >  SRR4302536.518329/1‑94 (MQ=60)

               GGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACG                                                                               <  SRR4302536.6404249/94‑1 (MQ=60)

               GGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACG                                                                               <  SRR4302536.336802/94‑1 (MQ=60)

               GGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACG                                                                               <  SRR4302536.5545714/94‑1 (MQ=60)

                  TGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTG                                                                            <  SRR4302536.4191855/94‑1 (MQ=60)

                  TGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTG                                                                            <  SRR4302536.2904843/94‑1 (MQ=60)

                  TGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTG                                                                            >  SRR4302536.4956948/1‑94 (MQ=60)

                  TGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTG                                                                            <  SRR4302536.3141861/94‑1 (MQ=60)

                    CAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTA                                                                          >  SRR4302536.721083/1‑94 (MQ=60)

                     AGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAA                                                                         <  SRR4302536.6794723/94‑1 (MQ=60)

                      GTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAAT                                                                        <  SRR4302536.3193146/94‑1 (MQ=60)

                        AAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGG                                                                      >  SRR4302536.4520920/1‑94 (MQ=60)

                          AACTGTGGCCCGAACCGGTAACGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGAACGGAGTAATGGGC                                                                    >  SRR4302536.6724082/1‑94 (MQ=60)

                          AACTGTGGCACGAACGGTTCTCGCCGCGTCACTGGTGTGGCGTGGTGTGCATTATTGGCGGCATTGCGATCCTCGGGAGTACAGTGTAATGGGG                                                                    <  SRR4302536.4196826/94‑1 (MQ=60)

                          AACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTTGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGC                                                                    >  SRR4302536.2113734/1‑94 (MQ=60)

                          AACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGC                                                                    >  SRR4302536.3938602/1‑94 (MQ=60)

                           ACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCC                                                                   >  SRR4302536.2635553/1‑94 (MQ=60)

                            CTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCT                                                                  <  SRR4302536.3029797/94‑1 (MQ=60)

                            CTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCT                                                                  <  SRR4302536.3999166/94‑1 (MQ=60)

                             TGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTG                                                                 <  SRR4302536.4066777/94‑1 (MQ=60)

                             TGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTG                                                                 >  SRR4302536.4827355/1‑94 (MQ=60)

                              GTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGA                                                                >  SRR4302536.3716910/1‑94 (MQ=60)

                               TGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGGT                                                               >  SRR4302536.3595837/1‑94 (MQ=60)

                                GGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATG                                                              <  SRR4302536.2448580/94‑1 (MQ=60)

                                 GCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGT                                                             <  SRR4302536.2424780/94‑1 (MQ=60)

                                  CACGAACCGGTATCGCCTCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTG                                                            <  SRR4302536.1240915/94‑1 (MQ=60)

                                   ACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGG                                                           <  SRR4302536.3757480/94‑1 (MQ=60)

                                    CGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGG                                                          <  SRR4302536.6080487/94‑1 (MQ=60)

                                    CGAACCGGTATCGCCGCGTCACTGGTGTGGGGCGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGGACGGTGTAATGGGCCTGATGTGGG                                                          >  SRR4302536.6851501/1‑94 (MQ=60)

                                     GAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGG                                                         >  SRR4302536.5156191/1‑94 (MQ=60)

                                      AACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGA                                                        <  SRR4302536.644812/94‑1 (MQ=60)

                                       ACCGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGAT                                                       <  SRR4302536.3317487/94‑1 (MQ=60)

                                         CGGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTA                                                     <  SRR4302536.2554916/94‑1 (MQ=60)

                                          GGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTAT                                                    >  SRR4302536.6820534/1‑94 (MQ=60)

                                          CGTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTAT                                                    <  SRR4302536.2276789/94‑1 (MQ=60)

                                           GTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATT                                                   >  SRR4302536.5902293/1‑94 (MQ=60)

                                           GTATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATT                                                   <  SRR4302536.4699983/94‑1 (MQ=60)

                                            TATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTC                                                  <  SRR4302536.2970609/94‑1 (MQ=60)

                                             ATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCA                                                 <  SRR4302536.5672468/94‑1 (MQ=60)

                                             ATCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCA                                                 >  SRR4302536.2103831/1‑94 (MQ=60)

                                              TCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAG                                                <  SRR4302536.831532/94‑1 (MQ=60)

                                              TCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAG                                                <  SRR4302536.1785952/94‑1 (MQ=60)

                                              TCGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAG                                                <  SRR4302536.6098187/94‑1 (MQ=60)

                                               CGCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGC                                               <  SRR4302536.6533653/94‑1 (MQ=60)

                                                GCCGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCG                                              >  SRR4302536.6255885/1‑94 (MQ=60)

                                                  CGCGTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGTTTATTCAGCGTC                                            >  SRR4302536.6901402/1‑94 (MQ=60)

                                                     GTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATT                                         <  SRR4302536.5269928/94‑1 (MQ=60)

                                                     GTCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGGACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATT                                         >  SRR4302536.4820789/1‑94 (MQ=60)

                                                      TCACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTA                                        >  SRR4302536.6230212/1‑94 (MQ=60)

                                                       CACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTAT                                       <  SRR4302536.2041666/94‑1 (MQ=60)

                                                        ACTGGTGTGTGGTGGTGTTCATTAGTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGTGCTTGATGTGGGGATTATTCAGCGTCATTATT                                      <  SRR4302536.3323495/94‑1 (MQ=60)

                                                        ACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATT                                      <  SRR4302536.209802/94‑1 (MQ=60)

                                                        ACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATT                                      <  SRR4302536.3490037/94‑1 (MQ=60)

                                                        ACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATT                                      <  SRR4302536.4676094/94‑1 (MQ=60)

                                                        ACTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATT                                      >  SRR4302536.4272047/1‑94 (MQ=60)

                                                         CTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTG                                     <  SRR4302536.5692193/94‑1 (MQ=60)

                                                         CTGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTG                                     >  SRR4302536.6243189/1‑94 (MQ=60)

                                                          TGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGC                                    >  SRR4302536.322109/1‑94 (MQ=60)

                                                          TGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGC                                    >  SRR4302536.2730722/1‑94 (MQ=60)

                                                          TGGTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGC                                    >  SRR4302536.2718979/1‑94 (MQ=60)

                                                          TGGTGTGGGGGGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGC                                    >  SRR4302536.5100238/1‑94 (MQ=60)

                                                            GTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCT                                  <  SRR4302536.5849048/94‑1 (MQ=60)

                                                            GTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCT                                  >  SRR4302536.737458/1‑94 (MQ=60)

                                                            GTGTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCT                                  <  SRR4302536.342033/94‑1 (MQ=60)

                                                              gcgggggggtGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGCTTATTCAGCGTCATTATTGCCTCA                                >  SRR4302536.4440314/11‑94 (MQ=60)

                                                              GTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCA                                <  SRR4302536.4803058/94‑1 (MQ=60)

                                                              GTGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCA                                <  SRR4302536.6593984/94‑1 (MQ=60)

                                                               TGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAG                               <  SRR4302536.4982740/94‑1 (MQ=60)

                                                               TGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAG                               >  SRR4302536.2460314/1‑94 (MQ=60)

                                                               TGGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAG                               <  SRR4302536.6412705/94‑1 (MQ=60)

                                                               TGGGGGGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAG                               >  SRR4302536.1157489/1‑94 (MQ=60)

                                                                GGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGT                              <  SRR4302536.5288313/94‑1 (MQ=60)

                                                                GGGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATAATTCAGCGTCATTATTGCCTCAGT                              <  SRR4302536.216494/94‑1 (MQ=60)

                                                                GGGGTGGTGTTCATTATTGGCGGAATTGCGATCCTCGGGAGGACGGTGTAATGGGCCTGATGTGGGGGTTATTCAGCGTCATTATTGCCGCAGT                              >  SRR4302536.1482556/1‑94 (MQ=60)

                                                                 GGGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTT                             <  SRR4302536.1264180/94‑1 (MQ=60)

                                                                  GGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTG                            <  SRR4302536.689221/94‑1 (MQ=60)

                                                                  GGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTG                            <  SRR4302536.5299200/94‑1 (MQ=60)

                                                                  GGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTG                            <  SRR4302536.2021638/94‑1 (MQ=60)

                                                                  GGTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTG                            <  SRR4302536.5831046/94‑1 (MQ=60)

                                                                  GGTGGTGTTCATTATTGGCGACATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTG                            <  SRR4302536.4430052/94‑1 (MQ=60)

                                                                   GTGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGC                           >  SRR4302536.3584868/1‑94 (MQ=60)

                                                                    TGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCG                          <  SRR4302536.3694297/94‑1 (MQ=60)

                                                                    TGGTGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCG                          >  SRR4302536.4698899/1‑94 (MQ=60)

                                                                    TGGGGTTCATTATTGGCGGCATTGCGGTCCTCGGGTGTACGGTGTACTGGGCCTGATGTGGGGATTATTCAGCGTCATTCTTGCCTCAGTTGGG                          >  SRR4302536.387681/1‑94 (MQ=60)

                                                                       TGTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAA                       <  SRR4302536.3629762/94‑1 (MQ=60)

                                                                        GTTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAAT                      >  SRR4302536.6291286/1‑94 (MQ=60)

                                                                         TTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATT                     >  SRR4302536.3801307/1‑94 (MQ=60)

                                                                         TTCATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATT                     >  SRR4302536.324127/1‑94 (MQ=60)

                                                                           CATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAA                   >  SRR4302536.5466123/1‑94 (MQ=60)

                                                                            ATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAG                  >  SRR4302536.2681335/1‑94 (MQ=60)

                                                                            ATTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAG                  >  SRR4302536.1249773/1‑94 (MQ=60)

                                                                             TTATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGC                 >  SRR4302536.4073361/1‑94 (MQ=60)

                                                                              TATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCC                <  SRR4302536.3219721/94‑1 (MQ=60)

                                                                              TATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCC                >  SRR4302536.3997715/1‑94 (MQ=60)

                                                                               ATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCT               <  SRR4302536.5411194/94‑1 (MQ=60)

                                                                               ATTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCT               <  SRR4302536.2661905/94‑1 (MQ=60)

                                                                                TTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTG              >  SRR4302536.4978286/1‑94 (MQ=60)

                                                                                TTGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTG              <  SRR4302536.5552814/94‑1 (MQ=60)

                                                                                 TGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGG             <  SRR4302536.6676935/94‑1 (MQ=60)

                                                                                 TGGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGG             <  SRR4302536.961591/94‑1 (MQ=60)

                                                                                  GGCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGG            <  SRR4302536.1105369/94‑1 (MQ=60)

                                                                                   GCGGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGT           <  SRR4302536.6726592/94‑1 (MQ=60)

                                                                                     GGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTT         <  SRR4302536.559800/94‑1 (MQ=60)

                                                                                     GGCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTT         <  SRR4302536.5948565/94‑1 (MQ=60)

                                                                                      GCATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTT        <  SRR4302536.4018277/94‑1 (MQ=60)

                                                                                       CATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTG       >  SRR4302536.5212526/1‑94 (MQ=60)

                                                                                       CATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTG       <  SRR4302536.4095667/94‑1 (MQ=60)

                                                                                       CATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTG       <  SRR4302536.37253/94‑1 (MQ=60)

                                                                                        ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC      >  SRR4302536.3067528/1‑94 (MQ=60)

                                                                                        ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC      <  SRR4302536.5307663/94‑1 (MQ=60)

                                                                                        ATTGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGC      >  SRR4302536.183187/1‑94 (MQ=60)

                                                                                          TGCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGG    >  SRR4302536.2050446/1‑94 (MQ=60)

                                                                                           GCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGC   >  SRR4302536.1037801/1‑94 (MQ=60)

                                                                                           GCGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGC   >  SRR4302536.5833518/1‑94 (MQ=60)

                                                                                            CGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCG  >  SRR4302536.6866321/1‑94 (MQ=60)

                                                                                            CGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCG  >  SRR4302536.6392450/1‑94 (MQ=60)

                                                                                            CGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTACCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCG  >  SRR4302536.4953469/1‑94 (MQ=60)

TGTCTGGGTGACGCTGGCTGCAGTAAAACTGTGGCACGAACCGGTATCGCCGCGTCACTGGTGTGGGGTGGCGTTCATTATTGGCGGCATTGTGATCCTCGGGAGTACGGTGTAATGGGCCTGATGTGGGGATTATTCAGCGTCATTATTGCCTCAGTTGCGCAATTAAGCCTGGGTTTTGCGGCG  >  NC_000913/2370798‑2370983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`