Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,409,813 T→C V175A (GTA→GCA)  b3262 → putative methyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,409,8130TC100.0% 924.7 / NA 288V175A (GTA→GCA) b3262putative methyltransferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (159/129);  total (159/129)

Only 100 of 294 total aligned reads displayed.

ATGCTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGTACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTACTGA  >  NC_000913/3409723‑3409902
                                                                                          |                                                                                         
 tGCTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCAcc                                                                                        >  1:3246094/1‑93 (MQ=255)
    tATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCggg                                                                                     >  2:1018931/1‑93 (MQ=255)
     aTTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGt                                                                                    <  1:4764525/93‑1 (MQ=255)
     aTTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGt                                                                                    <  2:3476638/93‑1 (MQ=255)
      ttCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTa                                                                                   >  1:2103480/1‑93 (MQ=255)
      ttCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCC‑TACAATTATCAAAAAAGACCGGGTaa                                                                                  >  1:2340636/1‑93 (MQ=255)
       tCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTaa                                                                                  <  2:451669/93‑1 (MQ=255)
       tCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTaa                                                                                  <  2:2905644/93‑1 (MQ=255)
        cTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAAc                                                                                 <  2:615374/93‑1 (MQ=255)
        cTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAAc                                                                                 <  1:489687/93‑1 (MQ=255)
           gTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGtt                                                                              <  2:6642107/93‑1 (MQ=255)
            tAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGttt                                                                             >  2:3158375/1‑93 (MQ=255)
            tAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGttt                                                                             <  1:3659046/93‑1 (MQ=255)
             aGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTg                                                                            >  1:228439/1‑93 (MQ=255)
             aGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTg                                                                            <  2:2189539/93‑1 (MQ=255)
             aGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTg                                                                            >  1:6468206/1‑93 (MQ=255)
             aGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTg                                                                            >  2:4854242/1‑93 (MQ=255)
              gAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTgg                                                                           >  2:1272197/1‑93 (MQ=255)
              gAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTgg                                                                           >  2:1649551/1‑93 (MQ=255)
              gAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTgg                                                                           <  1:943046/93‑1 (MQ=255)
              gAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTgg                                                                           <  1:6274233/93‑1 (MQ=255)
              gAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTgg                                                                           <  1:1193815/93‑1 (MQ=255)
               aaGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTggg                                                                          <  1:6698872/93‑1 (MQ=255)
               aaGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTggg                                                                          >  1:5568336/1‑93 (MQ=255)
                aGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGa                                                                         >  1:1501455/1‑93 (MQ=255)
                aGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGa                                                                         >  2:1063220/1‑93 (MQ=255)
                aGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGa                                                                         <  1:166952/93‑1 (MQ=255)
                  ccAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATTCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGAtt                                                                       >  1:5710102/1‑93 (MQ=255)
                  ccAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGAtt                                                                       <  1:1938237/93‑1 (MQ=255)
                   cAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGAttt                                                                      <  2:4839951/93‑1 (MQ=255)
                    aaaaCCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGAtttt                                                                     >  1:6405351/1‑93 (MQ=255)
                     aaaCCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTc                                                                    >  2:1145281/1‑93 (MQ=255)
                     aaaCCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTc                                                                    <  1:4165754/93‑1 (MQ=255)
                      aaCCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTcc                                                                   >  1:4480534/1‑93 (MQ=255)
                      aaCCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTcc                                                                   >  1:147407/1‑93 (MQ=255)
                         cGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCcgcg                                                                >  2:6342962/1‑93 (MQ=255)
                          ggATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCcgcgc                                                               <  2:4645966/93‑1 (MQ=255)
                          ggATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCcgcgc                                                               >  1:2009523/1‑93 (MQ=255)
                             tCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCgcgtg                                                            >  1:3341127/1‑93 (MQ=255)
                               gCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCgcgtgcg                                                          >  2:2998714/1‑93 (MQ=255)
                               gCAGCGCGCGTTGATCGATTATCGCAAAAATACTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCgcgtgcg                                                          >  1:1404701/1‑93 (MQ=255)
                                cAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCgcgtgcgt                                                         >  2:3624273/1‑93 (MQ=255)
                                cAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCgcgtgcgt                                                         <  2:5003220/93‑1 (MQ=255)
                                 aGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGtt                                                        >  1:5159497/1‑93 (MQ=255)
                                  gcgcgcGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTa                                                       <  1:3837057/93‑1 (MQ=255)
                                     cgcgTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTAttt                                                    <  1:3012340/93‑1 (MQ=255)
                                       ggTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTga                                                  <  1:3205457/92‑1 (MQ=255)
                                       cgTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTga                                                  <  2:388198/93‑1 (MQ=255)
                                       cgTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTga                                                  <  2:6306048/93‑1 (MQ=255)
                                         ttGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTgatg                                                >  1:2850225/1‑93 (MQ=255)
                                          tGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTgatgg                                               <  2:2690552/93‑1 (MQ=255)
                                           gATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTgatgga                                              >  1:7293/1‑93 (MQ=255)
                                           gATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTgatgga                                              >  1:2490500/1‑93 (MQ=255)
                                           gATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTgatgga                                              >  2:788506/1‑93 (MQ=255)
                                            aTCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTgatggat                                             <  2:5407549/93‑1 (MQ=255)
                                             tCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTgatggatg                                            >  1:1081575/1‑93 (MQ=255)
                                             tCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTgatggatg                                            >  1:275440/1‑93 (MQ=255)
                                             tCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTgatggatg                                            >  2:4118507/1‑93 (MQ=255)
                                               gATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGaa                                          <  1:5836057/93‑1 (MQ=255)
                                               gATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAACACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGaa                                          >  2:3566532/1‑93 (MQ=255)
                                                aTTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAat                                         <  1:3436595/93‑1 (MQ=255)
                                                aTTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAat                                         <  2:1550671/93‑1 (MQ=255)
                                                 ttATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAata                                        <  2:5884967/93‑1 (MQ=255)
                                                 ttATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAata                                        <  2:1985875/93‑1 (MQ=255)
                                                  tATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAatat                                       <  1:3539090/93‑1 (MQ=255)
                                                    tCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGa                                     >  2:205420/1‑93 (MQ=255)
                                                       cAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGaaaa                                  <  1:2673682/93‑1 (MQ=255)
                                                        aaaaaTCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAac                                 <  1:2893449/93‑1 (MQ=255)
                                                          aaaTCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTCATTTGATGGATGAATATGAAAacca                               <  1:1305455/93‑1 (MQ=255)
                                                           aaTCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAaccac                              >  2:2744480/1‑93 (MQ=255)
                                                            aTCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAaccacc                             <  1:5318998/93‑1 (MQ=255)
                                                            aTCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAaccacc                             >  1:2718953/1‑93 (MQ=255)
                                                                tccACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCCCCCGAc                         <  1:685046/93‑1 (MQ=255)
                                                                tccACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGAc                         <  2:1918997/93‑1 (MQ=255)
                                                                tccACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGAc                         <  2:4440457/93‑1 (MQ=255)
                                                                    caGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCaa                     <  1:3994873/93‑1 (MQ=255)
                                                                       ccTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCaaaaa                  >  2:3264936/1‑93 (MQ=255)
                                                                        cTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAAc                 <  1:5091718/93‑1 (MQ=255)
                                                                        cTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAAc                 >  2:3213314/1‑93 (MQ=255)
                                                                        cTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAAc                 <  2:2217614/93‑1 (MQ=255)
                                                                         ttACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAAcc                >  2:2162074/1‑93 (MQ=255)
                                                                         ttACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAAcc                >  2:5225142/1‑93 (MQ=255)
                                                                         ttACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAAcc                >  2:5570942/1‑93 (MQ=255)
                                                                          tACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCg               >  2:5689802/1‑93 (MQ=255)
                                                                            cAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCACAAACCGGa             >  2:5969080/1‑93 (MQ=255)
                                                                            cAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGa             >  2:933003/1‑93 (MQ=255)
                                                                             aaTCATCAAAAAGCACCGGGTAACGTTTGGGATTTTGCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGaa            >  2:2120592/1‑93 (MQ=255)
                                                                             aaTCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGaa            <  1:4392215/93‑1 (MQ=255)
                                                                             aaTCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGaa            <  1:1737331/93‑1 (MQ=255)
                                                                             aaTCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGaa            <  2:2607039/93‑1 (MQ=255)
                                                                              atcatcAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAg           >  1:3270266/1‑93 (MQ=255)
                                                                               tcatcaAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGc          >  1:6118038/1‑93 (MQ=255)
                                                                               tcatcaAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGc          >  1:3369879/1‑93 (MQ=255)
                                                                                catcaAAAAGCTCCGGGTAACGTTTGGGATTTCCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGcc         <  2:3536425/93‑1 (MQ=255)
                                                                                catcaAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCGCCCGACGCAAAAACCGGAAGcc         <  2:3796845/93‑1 (MQ=255)
                                                                                catcaAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGcc         <  2:2151729/93‑1 (MQ=255)
                                                                                 atcaAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCt        <  1:834530/93‑1 (MQ=255)
                                                                                    aaaaaGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTAc     <  2:4288065/93‑1 (MQ=255)
                                                                                    aaaaaGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTAc     <  2:307217/93‑1 (MQ=255)
                                                                                    aaaaaGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTAc     <  1:2219076/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATGCTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGTACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTACTGA  >  NC_000913/3409723‑3409902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTGATGCTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGTACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTACTGAAACG  >  NC_000913/3409720‑3409906
                                                                                             |                                                                                             
GTGATGCTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGC                                                                                               >  SRR4302536.1647000/1‑94 (MQ=60)
  GATGCTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCAC                                                                                             <  SRR4302536.2609517/94‑1 (MQ=60)
  GATGCTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCAC                                                                                             <  SRR4302536.4415761/94‑1 (MQ=60)
   ATGCTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACC                                                                                            <  SRR4302536.2461549/94‑1 (MQ=60)
   ATGCTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACC                                                                                            >  SRR4302536.3341271/1‑94 (MQ=60)
   ATGCTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACC                                                                                            <  SRR4302536.2182257/94‑1 (MQ=60)
     GCTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGG                                                                                          >  SRR4302536.585289/1‑94 (MQ=60)
     GCTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGG                                                                                          >  SRR4302536.3362405/1‑94 (MQ=60)
      CTATTCTGGTAGAAGCTAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGG                                                                                         <  SRR4302536.2340032/94‑1 (MQ=60)
      CTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGG                                                                                         >  SRR4302536.5432120/1‑94 (MQ=60)
      CTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGG                                                                                         >  SRR4302536.4135175/1‑94 (MQ=60)
        ATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTA                                                                                       <  SRR4302536.4908011/94‑1 (MQ=60)
        ATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTA                                                                                       >  SRR4302536.2166719/1‑94 (MQ=60)
        ATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCC‑TACAATTATCAAAAAAGACCGGGTAA                                                                                      >  SRR4302536.2411638/1‑94 (MQ=60)
          TCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAAC                                                                                     <  SRR4302536.6471763/94‑1 (MQ=60)
           CTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACG                                                                                    <  SRR4302536.502374/94‑1 (MQ=60)
           CTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACG                                                                                    >  SRR4302536.3422674/1‑94 (MQ=60)
           CTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACG                                                                                    >  SRR4302536.864479/1‑94 (MQ=60)
            TGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGT                                                                                   <  SRR4302536.5296361/94‑1 (MQ=60)
               TAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTG                                                                                >  SRR4302536.234514/1‑94 (MQ=60)
               TAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTG                                                                                <  SRR4302536.3768438/94‑1 (MQ=60)
               TAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTG                                                                                >  SRR4302536.6661264/1‑94 (MQ=60)
               TAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTG                                                                                >  SRR4302536.3991717/1‑94 (MQ=60)
               TAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTG                                                                                <  SRR4302536.3461180/94‑1 (MQ=60)
                 GAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGG                                                                              <  SRR4302536.6461170/94‑1 (MQ=60)
                 GAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGG                                                                              <  SRR4302536.970876/94‑1 (MQ=60)
                 GAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGG                                                                              <  SRR4302536.4946964/94‑1 (MQ=60)
                 GAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGG                                                                              <  SRR4302536.1229713/94‑1 (MQ=60)
                 GAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGG                                                                              >  SRR4302536.5734115/1‑94 (MQ=60)
                  AAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGA                                                                             <  SRR4302536.6897842/94‑1 (MQ=60)
                  AAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGA                                                                             >  SRR4302536.1545734/1‑94 (MQ=60)
                  AAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGA                                                                             <  SRR4302536.1507318/94‑1 (MQ=60)
                   AGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGAT                                                                            <  SRR4302536.171301/94‑1 (MQ=60)
                   AGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGAT                                                                            >  SRR4302536.2008863/1‑94 (MQ=60)
                   AGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGCAACGTTTGGGAT                                                                            >  SRR4302536.2499420/1‑94 (MQ=60)
                    GCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATTCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATT                                                                           >  SRR4302536.5879913/1‑94 (MQ=60)
                    GCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATT                                                                           <  SRR4302536.723389/94‑1 (MQ=60)
                     CCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTT                                                                          <  SRR4302536.1996533/94‑1 (MQ=60)
                     CCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCACCAAAAAGCACCGGGTAACGTTTGGGATTT                                                                          <  SRR4302536.354157/94‑1 (MQ=60)
                      CAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTT                                                                         <  SRR4302536.99825/94‑1 (MQ=60)
                      CAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTT                                                                         >  SRR4302536.6596565/1‑94 (MQ=60)
                       AAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTC                                                                        >  SRR4302536.2879482/1‑94 (MQ=60)
                        AAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCC                                                                       >  SRR4302536.2117901/1‑94 (MQ=60)
                        AAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCC                                                                       <  SRR4302536.4289514/94‑1 (MQ=60)
                        AAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCC                                                                       >  SRR4302536.151247/1‑94 (MQ=60)
                        AAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCC                                                                       >  SRR4302536.4615117/1‑94 (MQ=60)
                        AAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCC                                                                       <  SRR4302536.1519080/94‑1 (MQ=60)
                         AACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCG                                                                      <  SRR4302536.2729417/94‑1 (MQ=60)
                         AACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAAAGTTTGGGATTTTCCG                                                                      >  SRR4302536.5004015/1‑94 (MQ=60)
                          ACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGC                                                                     >  SRR4302536.2944306/1‑94 (MQ=60)
                           CCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCG                                                                    >  SRR4302536.6921546/1‑94 (MQ=60)
                           CCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCG                                                                    <  SRR4302536.2980806/94‑1 (MQ=60)
                            CGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGC                                                                   >  SRR4302536.2070000/1‑94 (MQ=60)
                            CGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGC                                                                   <  SRR4302536.4403311/94‑1 (MQ=60)
                            CGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGC                                                                   >  SRR4302536.3218239/1‑94 (MQ=60)
                              GATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGT                                                                 >  SRR4302536.5091980/1‑94 (MQ=60)
                              GATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGT                                                                 >  SRR4302536.3678739/1‑94 (MQ=60)
                               ATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTG                                                                >  SRR4302536.3440116/1‑94 (MQ=60)
                                TCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGC                                                               >  SRR4302536.4063085/1‑94 (MQ=60)
                                 CGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCG                                                              >  SRR4302536.3863252/1‑94 (MQ=60)
                                 CGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCG                                                              >  SRR4302536.852829/1‑94 (MQ=60)
                                 CGCAGCGCGCGTTGATCGATTATCGCAAAAATACTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCG                                                              >  SRR4302536.1446478/1‑94 (MQ=60)
                                   CAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTT                                                            >  SRR4302536.5313444/1‑94 (MQ=60)
                                   CAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTT                                                            <  SRR4302536.295445/94‑1 (MQ=60)
                                   CAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTT                                                            <  SRR4302536.4231705/94‑1 (MQ=60)
                                   CAGCGCGCGGTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTT                                                            <  SRR4302536.1047852/94‑1 (MQ=60)
                                    AGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTA                                                           <  SRR4302536.132387/94‑1 (MQ=60)
                                     GCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTAT                                                          <  SRR4302536.3951321/94‑1 (MQ=60)
                                       GCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTT                                                        <  SRR4302536.3063996/94‑1 (MQ=60)
                                        CGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTG                                                       <  SRR4302536.3100884/94‑1 (MQ=60)
                                          GGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGAT                                                     <  SRR4302536.3299472/94‑1 (MQ=60)
                                          CGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTGCGCGCGTGCGTTATTTGAT                                                     >  SRR4302536.1725868/1‑94 (MQ=60)
                                          CGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGAT                                                     <  SRR4302536.1348684/94‑1 (MQ=60)
                                          CGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGAT                                                     <  SRR4302536.941615/94‑1 (MQ=60)
                                           GTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATG                                                    <  SRR4302536.3258620/94‑1 (MQ=60)
                                           GTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATG                                                    >  SRR4302536.2934495/1‑94 (MQ=60)
                                           GTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATG                                                    <  SRR4302536.2769073/94‑1 (MQ=60)
                                             TGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCCTCAAAAAGCACCGGGTAACGTTTGCGATTTTCCGCGCGTGCGTTCTTTGATGGT                                                  >  SRR4302536.4370342/1‑94 (MQ=60)
                                             TGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGA                                                  >  SRR4302536.7493/1‑94 (MQ=60)
                                             TGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGA                                                  >  SRR4302536.2565628/1‑94 (MQ=60)
                                              GATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGAT                                                 <  SRR4302536.597885/94‑1 (MQ=60)
                                              GATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGAT                                                 <  SRR4302536.3476337/94‑1 (MQ=60)
                                              GATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGAT                                                 >  SRR4302536.3312066/1‑94 (MQ=60)
                                              GATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGAT                                                 <  SRR4302536.1885316/94‑1 (MQ=60)
                                               ATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATG                                                >  SRR4302536.1113959/1‑94 (MQ=60)
                                               ATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATG                                                >  SRR4302536.282764/1‑94 (MQ=60)
                                               ATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATG                                                <  SRR4302536.6635523/94‑1 (MQ=60)
                                               ATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATG                                                >  SRR4302536.1661871/1‑94 (MQ=60)
                                                TCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGA                                               >  SRR4302536.1596101/1‑94 (MQ=60)
                                                 CGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAA                                              <  SRR4302536.338325/94‑1 (MQ=60)
                                                 CGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAA                                              >  SRR4302536.5782233/1‑94 (MQ=60)
                                                  GATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAAT                                             >  SRR4302536.6665142/1‑94 (MQ=60)
                                                  GATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAAT                                             <  SRR4302536.6009936/94‑1 (MQ=60)
                                                  GATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAAT                                             <  SRR4302536.2282261/94‑1 (MQ=60)
                                                  GATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAAT                                             >  SRR4302536.2823387/1‑94 (MQ=60)
                                                   ATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATC                                            <  SRR4302536.3538917/94‑1 (MQ=60)
                                                   ATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATA                                            >  SRR4302536.1492054/1‑94 (MQ=60)
                                                   ATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATA                                            <  SRR4302536.2850211/94‑1 (MQ=60)
                                                     TATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATG                                          >  SRR4302536.6817933/1‑94 (MQ=60)
                                                     TATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATG                                          >  SRR4302536.2320037/1‑94 (MQ=60)
                                                     TATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATG                                          <  SRR4302536.3644900/94‑1 (MQ=60)
                                                         GCACAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTCCCGCGCGTGCGTTATTTGATGGATGAATATGAAAA                                      <  SRR4302536.5587535/94‑1 (MQ=60)
                                                          CAAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAAC                                     <  SRR4302536.2753615/94‑1 (MQ=60)
                                                           AAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACC                                    >  SRR4302536.2620899/1‑94 (MQ=60)
                                                           AAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACC                                    <  SRR4302536.2978776/94‑1 (MQ=60)
                                                           AAAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAAAC                                    >  SRR4302536.371193/1‑94 (MQ=60)
                                                            AAAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCA                                   >  SRR4302536.1343059/1‑94 (MQ=60)
                                                             AAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCTCGTGCGTTATTTGATGGATGAATATGAAAACCAC                                  >  SRR4302536.747308/1‑94 (MQ=60)
                                                             AAATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTCATTTGATGGATGAATATGAAAACCAC                                  <  SRR4302536.1344434/94‑1 (MQ=60)
                                                              AATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACC                                 >  SRR4302536.2800067/1‑94 (MQ=60)
                                                               ATCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCC                                <  SRR4302536.5477891/94‑1 (MQ=60)
                                                                TCCTCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCG                               <  SRR4302536.2778054/94‑1 (MQ=60)
                                                                   TCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCCCCCGACG                            <  SRR4302536.705111/94‑1 (MQ=60)
                                                                   TCCACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACG                            <  SRR4302536.831911/94‑1 (MQ=60)
                                                                     CACAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCA                          >  SRR4302536.3848087/1‑94 (MQ=60)
                                                                       CAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAA                        >  SRR4302536.597526/1‑94 (MQ=60)
                                                                       CAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAA                        >  SRR4302536.451054/1‑94 (MQ=60)
                                                                       CAGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAA                        <  SRR4302536.4113425/94‑1 (MQ=60)
                                                                        AGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAACA                       >  SRR4302536.235872/1‑94 (MQ=60)
                                                                        AGCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACACGACGCAAAA                       >  SRR4302536.633900/1‑94 (MQ=60)
                                                                         GCCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAA                      >  SRR4302536.6143936/1‑94 (MQ=60)
                                                                          CCTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCTCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAAC                     <  SRR4302536.5154323/94‑1 (MQ=60)
                                                                           CTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACC                    >  SRR4302536.5629455/1‑94 (MQ=60)
                                                                           CTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACC                    <  SRR4302536.5243988/94‑1 (MQ=60)
                                                                           CTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACC                    >  SRR4302536.6553464/1‑94 (MQ=60)
                                                                           CTTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACC                    >  SRR4302536.4579014/1‑94 (MQ=60)
                                                                            TTACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCG                   >  SRR4302536.5709105/1‑94 (MQ=60)
                                                                             TACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAAGCGG                  >  SRR4302536.134465/1‑94 (MQ=60)
                                                                              ACAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGA                 >  SRR4302536.3348935/1‑94 (MQ=60)
                                                                               CAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAA                >  SRR4302536.3530729/1‑94 (MQ=60)
                                                                               CAATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAA                >  SRR4302536.3570853/1‑94 (MQ=60)
                                                                                AATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAG               <  SRR4302536.1115219/94‑1 (MQ=60)
                                                                                AATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAG               >  SRR4302536.3366295/1‑94 (MQ=60)
                                                                                AATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAG               <  SRR4302536.4523411/94‑1 (MQ=60)
                                                                                AATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAG               <  SRR4302536.4892171/94‑1 (MQ=60)
                                                                                AATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAG               <  SRR4302536.1787441/94‑1 (MQ=60)
                                                                                AATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAG               <  SRR4302536.6912279/94‑1 (MQ=60)
                                                                                 ATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGC              >  SRR4302536.6300388/1‑94 (MQ=60)
                                                                                 ATCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGC              >  SRR4302536.3469985/1‑94 (MQ=60)
                                                                                  TCATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCC             >  SRR4302536.6307952/1‑94 (MQ=60)
                                                                                   CATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCT            <  SRR4302536.2049523/94‑1 (MQ=60)
                                                                                   CATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCT            <  SRR4302536.1837516/94‑1 (MQ=60)
                                                                                   CACCAAGAAGCACCGGGTAACGTTTGGCATCGTCCGCACGTGCGTTAGTTGAGTGATGAATATGAAAACCACCCGCCGCAAAAACCGGAAGCCT            <  SRR4302536.3453459/94‑1 (MQ=40)
                                                                                    ATCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTT           <  SRR4302536.859072/94‑1 (MQ=60)
                                                                                     TCAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTA          <  SRR4302536.2152732/94‑1 (MQ=60)
                                                                                      CAAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTAC         >  SRR4302536.6632978/1‑94 (MQ=60)
                                                                                       AAAAAGCACCGGGTAACGTTTTGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTACT        <  SRR4302536.2375294/94‑1 (MQ=60)
                                                                                       AAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTACT        >  SRR4302536.3465060/1‑94 (MQ=60)
                                                                                       AAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTACT        <  SRR4302536.3314227/94‑1 (MQ=60)
                                                                                       AAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTACT        <  SRR4302536.2286188/94‑1 (MQ=60)
                                                                                       AAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTACT        >  SRR4302536.5305622/1‑94 (MQ=60)
                                                                                       AAAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTACT        >  SRR4302536.6191133/1‑94 (MQ=60)
                                                                                        AAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGCAGACTTACTG       >  SRR4302536.1529784/1‑94 (MQ=60)
                                                                                        AAAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTACTG       >  SRR4302536.1720761/1‑94 (MQ=60)
                                                                                         AAAGCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTACTGA      >  SRR4302536.5330984/1‑94 (MQ=60)
                                                                                            GCACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTACTGAAAC   <  SRR4302536.5696163/94‑1 (MQ=60)
                                                                                             CACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTACTGAAACG  >  SRR4302536.4585329/1‑94 (MQ=60)
                                                                                             |                                                                                             
GTGATGCTATTCTGGTAGAAGCCAAAACCGGATCGCAGCGCGCGTTGATCGATTATCGCAAAAATCCTCCACAGCCTTACAATCATCAAAAAGTACCGGGTAACGTTTGGGATTTTCCGCGCGTGCGTTATTTGATGGATGAATATGAAAACCACCCGACGCAAAAACCGGAAGCCTTACTGAAACG  >  NC_000913/3409720‑3409906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑