Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,411,069 T→C T12A (ACC→GCC)  envR ← putative transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,411,0690TC100.0% 609.1 / NA 183T12A (ACC→GCC) envRputative transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (13/170);  total (13/170)

Only 100 of 184 total aligned reads displayed.

TAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGT  >  NC_000913/3410979‑3411158
                                                                                          |                                                                                         
 aGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCtt                                                                                        <  2:4369745/93‑1 (MQ=255)
 aGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCtt                                                                                        <  1:2281161/93‑1 (MQ=255)
  gcggcgTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTc                                                                                       >  1:2732570/1‑93 (MQ=255)
    ggcgTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCag                                                                                     <  1:1751416/93‑1 (MQ=255)
     gcgTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCaga                                                                                    <  1:2279652/93‑1 (MQ=255)
       cgcGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGc                                                                                  <  1:4230853/91‑1 (MQ=255)
        tCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCt                                                                                 <  1:5485417/93‑1 (MQ=255)
        tCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTCCAATCAGTTCTTGCCGGGCCTTCAGAGCt                                                                                 <  2:4267083/93‑1 (MQ=255)
         cGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCtt                                                                                <  2:5510351/93‑1 (MQ=255)
          ggCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTc                                                                               <  1:432947/93‑1 (MQ=255)
           gCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCg                                                                              <  1:5854902/93‑1 (MQ=255)
             aaTGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGc                                                                            <  2:4569438/93‑1 (MQ=255)
             aaTGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGc                                                                            >  1:1975119/1‑93 (MQ=255)
             aaTGTAGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGc                                                                            <  1:6596056/93‑1 (MQ=255)
              aTGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCt                                                                           <  2:1204545/93‑1 (MQ=255)
              aTGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCt                                                                           <  2:607969/93‑1 (MQ=255)
               tGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCtt                                                                          <  2:1981019/93‑1 (MQ=255)
               tGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCtt                                                                          <  1:696366/93‑1 (MQ=255)
               tGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCtt                                                                          <  2:3005793/93‑1 (MQ=255)
               tGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCtt                                                                          <  1:2935814/93‑1 (MQ=255)
                gTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCttt                                                                         <  2:5385425/93‑1 (MQ=255)
                   gTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGt                                                                      <  2:671884/93‑1 (MQ=255)
                   gTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGt                                                                      >  1:4284038/1‑93 (MQ=255)
                   gTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGt                                                                      <  1:759655/93‑1 (MQ=255)
                     tGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTc                                                                    <  1:1355856/93‑1 (MQ=255)
                     tGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTc                                                                    <  2:5880737/93‑1 (MQ=255)
                      gAGCGTCGTCTTGCTTACGACATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCt                                                                   <  1:2961343/93‑1 (MQ=255)
                       aGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCtt                                                                  <  1:1429640/93‑1 (MQ=255)
                       aGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCtt                                                                  <  2:3347727/93‑1 (MQ=255)
                         cgtcgtCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCtttt                                                                <  2:664156/93‑1 (MQ=255)
                         cgtcgtCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCtttt                                                                <  2:5426487/93‑1 (MQ=255)
                         cgtcgtCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCtttt                                                                <  1:4744250/93‑1 (MQ=255)
                         cgtcgtCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCtttt                                                                <  2:4504772/93‑1 (MQ=255)
                          gtcgttTTGCTTACGCCATACTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCttttt                                                               <  1:4438382/93‑1 (MQ=255)
                          gtcgtcTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCttttt                                                               <  2:2485548/93‑1 (MQ=255)
                          gtcgtcTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCttttt                                                               <  2:4148629/93‑1 (MQ=255)
                             gtcTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGcc                                                            <  2:6333694/93‑1 (MQ=255)
                              tcTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCa                                                           <  2:4454109/93‑1 (MQ=255)
                              tcTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCa                                                           <  1:4070820/93‑1 (MQ=255)
                               cTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCAt                                                          <  2:2877960/93‑1 (MQ=255)
                                ttGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATg                                                         >  1:6490367/1‑93 (MQ=255)
                                 tGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGa                                                        <  1:876341/93‑1 (MQ=255)
                                  gCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGat                                                       <  2:1656776/93‑1 (MQ=255)
                                  ccTTACGCCATGCTGCGCATACTGGGCGATGGCATTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGat                                                       <  1:4656274/92‑1 (MQ=255)
                                   cTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGatt                                                      <  1:5340509/93‑1 (MQ=255)
                                   cTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGatt                                                      <  2:4043785/93‑1 (MQ=255)
                                   cTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGatt                                                      <  1:3686805/93‑1 (MQ=255)
                                    ttACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGatta                                                     <  2:487240/93‑1 (MQ=255)
                                    ttACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGatta                                                     <  1:779261/93‑1 (MQ=255)
                                     tACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGattaa                                                    <  2:5153768/93‑1 (MQ=255)
                                      aCGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGattaat                                                   <  1:1145248/93‑1 (MQ=255)
                                      aCGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGattaat                                                   <  2:6556931/93‑1 (MQ=255)
                                        gCCATGCTGCGCAAACTGGTCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGattaatta                                                 <  1:2127685/93‑1 (MQ=255)
                                        gCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGattaatta                                                 <  2:3809034/93‑1 (MQ=255)
                                        gCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGattaatta                                                 <  1:5234943/93‑1 (MQ=255)
                                        gCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGattaatta                                                 <  2:6054730/93‑1 (MQ=255)
                                        gCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGattaatta                                                 <  1:2208792/93‑1 (MQ=255)
                                        cacATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGattaatta                                                 <  2:3332172/91‑1 (MQ=255)
                                         ccATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAattat                                                >  1:4838132/1‑93 (MQ=255)
                                          cATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAattatt                                               <  1:2455234/93‑1 (MQ=255)
                                           aTGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTc                                              <  1:6032358/93‑1 (MQ=255)
                                            tgctgcGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCa                                             <  1:5431424/93‑1 (MQ=255)
                                            tgctgcGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCa                                             <  2:5459971/93‑1 (MQ=255)
                                            tgctgcGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCa                                             <  2:4696172/93‑1 (MQ=255)
                                            tgctgcGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCa                                             <  1:3145016/93‑1 (MQ=255)
                                             gctgcGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAg                                            <  2:1053573/93‑1 (MQ=255)
                                             gctgcGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAg                                            <  1:5637770/93‑1 (MQ=255)
                                             gctgcGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAg                                            <  2:3918036/93‑1 (MQ=255)
                                               tgcGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGa                                          <  2:596176/93‑1 (MQ=255)
                                                 cgcAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGaaa                                        <  1:3254992/93‑1 (MQ=255)
                                                  gcAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGaaat                                       <  1:839544/93‑1 (MQ=255)
                                                  gcAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGaaat                                       <  1:3797335/93‑1 (MQ=255)
                                                    aaaCTGGGTGATGGCAGTTTCGATCAGTTCTTGCGGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGaaataa                                     <  2:1119551/93‑1 (MQ=255)
                                                     aaCTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGaaataaa                                    <  1:4877311/93‑1 (MQ=255)
                                                     aaCTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGaaataaa                                    <  2:5834097/93‑1 (MQ=255)
                                                       cTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAaataaata                                  <  2:2729943/93‑1 (MQ=255)
                                                       cTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAaataaata                                  <  1:5819474/93‑1 (MQ=255)
                                                           gCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATAtt                              <  2:5090649/93‑1 (MQ=255)
                                                           gCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATAtt                              <  1:1010048/93‑1 (MQ=255)
                                                            cGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTc                             <  2:4189922/93‑1 (MQ=255)
                                                              aTGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGa                           <  2:4865823/93‑1 (MQ=255)
                                                               tGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGac                          <  2:6615134/93‑1 (MQ=255)
                                                                  cAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGAcaca                       <  1:2274039/93‑1 (MQ=255)
                                                                   aGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACag                      <  1:4985882/93‑1 (MQ=255)
                                                                     tttCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACagag                    <  2:2291714/93‑1 (MQ=255)
                                                                      ttCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGt                   <  2:1758178/93‑1 (MQ=255)
                                                                      ttCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGt                   <  2:232638/93‑1 (MQ=255)
                                                                            cAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGaaa             <  1:3355174/93‑1 (MQ=255)
                                                                            cAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGaaa             <  1:4920183/93‑1 (MQ=255)
                                                                            cAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGaaa             <  1:1028969/93‑1 (MQ=255)
                                                                             aGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGaaaa            <  2:1691628/93‑1 (MQ=255)
                                                                             aGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGaaaa            <  2:3681051/93‑1 (MQ=255)
                                                                              gTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAAt           <  1:4556215/93‑1 (MQ=255)
                                                                               ttCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATa          <  2:3094710/93‑1 (MQ=255)
                                                                                 cTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGc        <  2:2435357/93‑1 (MQ=255)
                                                                                  ttGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCg       <  1:574929/93‑1 (MQ=255)
                                                                                       gggCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGt  <  1:6182160/93‑1 (MQ=255)
                                                                                       gggCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGt  <  1:1742353/93‑1 (MQ=255)
                                                                                       gggCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGt  <  2:2083586/93‑1 (MQ=255)
                                                                                       gggCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGt  <  1:1544645/93‑1 (MQ=255)
                                                                                          |                                                                                         
TAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGT  >  NC_000913/3410979‑3411158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAAT  >  NC_000913/3410976‑3411162
                                                                                             |                                                                                             
CGTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGC                                                                                               >  SRR4302536.2373796/1‑94 (MQ=60)
 GTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCC                                                                                              >  SRR4302536.3312852/1‑94 (MQ=60)
 GTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCC                                                                                              >  SRR4302536.6679599/1‑94 (MQ=60)
  TTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCT                                                                                             <  SRR4302536.2550040/94‑1 (MQ=60)
  TTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCT                                                                                             <  SRR4302536.4241484/94‑1 (MQ=60)
    AGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTC                                                                                           <  SRR4302536.2350321/94‑1 (MQ=60)
    AGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTC                                                                                           >  SRR4302536.2814004/1‑94 (MQ=60)
       GGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGA                                                                                        <  SRR4302536.1802974/94‑1 (MQ=60)
        GCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAG                                                                                       <  SRR4302536.2348774/94‑1 (MQ=60)
          cgCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCT                                                                                     <  SRR4302536.4356748/92‑1 (MQ=60)
          GTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCT                                                                                     <  SRR4302536.4480348/94‑1 (MQ=60)
           TCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTT                                                                                    <  SRR4302536.5649168/94‑1 (MQ=60)
             GGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCG                                                                                  <  SRR4302536.444335/94‑1 (MQ=60)
              GCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGG                                                                                 <  SRR4302536.6029343/94‑1 (MQ=60)
               CAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGC                                                                                >  SRR4302536.2034516/1‑94 (MQ=60)
                AATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCT                                                                               >  SRR4302536.6200889/1‑94 (MQ=60)
                AATGTAGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCT                                                                               <  SRR4302536.6792266/94‑1 (MQ=60)
                 ATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTT                                                                              <  SRR4302536.5692047/94‑1 (MQ=60)
                 ATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTT                                                                              <  SRR4302536.3000767/94‑1 (MQ=60)
                  TGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTT                                                                             <  SRR4302536.6845746/94‑1 (MQ=60)
                  TGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTT                                                                             <  SRR4302536.716707/94‑1 (MQ=60)
                  TGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTT                                                                             <  SRR4302536.3022428/94‑1 (MQ=60)
                     CGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGT                                                                          >  SRR4302536.4411961/1‑94 (MQ=60)
                      GTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTT                                                                         <  SRR4302536.5857805/94‑1 (MQ=60)
                      GTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTT                                                                         <  SRR4302536.781934/94‑1 (MQ=60)
                        TGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCT                                                                       <  SRR4302536.1396264/94‑1 (MQ=60)
                         GAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTT                                                                      <  SRR4302536.83367/94‑1 (MQ=60)
                         GAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTT                                                                      <  SRR4302536.5102986/94‑1 (MQ=60)
                         GAGCGTCGTCTTGCTTACGACATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTT                                                                      <  SRR4302536.3048579/94‑1 (MQ=60)
                          AGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTT                                                                     <  SRR4302536.2429423/94‑1 (MQ=60)
                          AGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTT                                                                     <  SRR4302536.6590909/94‑1 (MQ=60)
                          AGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTT                                                                     <  SRR4302536.1472097/94‑1 (MQ=60)
                           GCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTT                                                                    <  SRR4302536.2236921/94‑1 (MQ=60)
                           GCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTT                                                                    <  SRR4302536.5968127/94‑1 (MQ=60)
                            CGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTT                                                                   <  SRR4302536.4887033/94‑1 (MQ=60)
                             GTCGTTTTGCTTACGCCATACTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTG                                                                  <  SRR4302536.4571593/94‑1 (MQ=60)
                             GTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTG                                                                  >  SRR4302536.2768288/1‑94 (MQ=60)
                                 TCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCAT                                                              <  SRR4302536.4191469/94‑1 (MQ=60)
                                  CTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATG                                                             >  SRR4302536.6683893/1‑94 (MQ=60)
                                   TTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGA                                                            <  SRR4302536.6011350/94‑1 (MQ=60)
                                    TGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGAT                                                           <  SRR4302536.902153/94‑1 (MQ=60)
                                     CCTTACGCCATGCTGCGCATACTGGGCGATGGCATTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATT                                                          <  SRR4302536.4796273/94‑1 (MQ=60)
                                      CTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTA                                                         <  SRR4302536.5500027/94‑1 (MQ=60)
                                      CTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTA                                                         <  SRR4302536.5500026/94‑1 (MQ=60)
                                      CTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTA                                                         <  SRR4302536.3797075/94‑1 (MQ=60)
                                       TTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAA                                                        <  SRR4302536.802091/94‑1 (MQ=60)
                                        TACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAAAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAAT                                                       <  SRR4302536.1450954/94‑1 (MQ=60)
                                         ACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATT                                                      <  SRR4302536.1179688/94‑1 (MQ=60)
                                         ACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATT                                                      <  SRR4302536.1233726/94‑1 (MQ=60)
                                          CGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTA                                                     <  SRR4302536.1501996/94‑1 (MQ=60)
                                           GCCATGCTGCGCAAACTGGTCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTAT                                                    <  SRR4302536.2191587/94‑1 (MQ=60)
                                           GCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTAT                                                    <  SRR4302536.1847624/94‑1 (MQ=60)
                                           GCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTAT                                                    >  SRR4302536.4983755/1‑94 (MQ=60)
                                           GCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTAT                                                    <  SRR4302536.3035677/94‑1 (MQ=60)
                                           GCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTAT                                                    <  SRR4302536.2275489/94‑1 (MQ=60)
                                           GCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTAT                                                    <  SRR4302536.5390918/94‑1 (MQ=60)
                                            CCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATT                                                   <  SRR4302536.377412/94‑1 (MQ=60)
                                             CATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTC                                                  <  SRR4302536.2529369/94‑1 (MQ=60)
                                              ATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCA                                                 <  SRR4302536.6212237/94‑1 (MQ=60)
                                               TGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAG                                                <  SRR4302536.3237100/94‑1 (MQ=60)
                                               TGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAG                                                <  SRR4302536.5593822/94‑1 (MQ=60)
                                                GCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGG                                               <  SRR4302536.5805262/94‑1 (MQ=60)
                                                   GCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAA                                            <  SRR4302536.494627/94‑1 (MQ=60)
                                                    CGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAAT                                           <  SRR4302536.3350417/94‑1 (MQ=60)
                                                     GCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATA                                          >  SRR4302536.800225/1‑94 (MQ=60)
                                                     GCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATA                                          <  SRR4302536.3910595/94‑1 (MQ=60)
                                                     GCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATA                                          <  SRR4302536.864230/94‑1 (MQ=60)
                                                      CAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAA                                         <  SRR4302536.3236941/94‑1 (MQ=60)
                                                        AACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAAT                                       <  SRR4302536.5024029/94‑1 (MQ=60)
                                                        AACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAAT                                       <  SRR4302536.5043817/94‑1 (MQ=60)
                                                          CTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATAT                                     <  SRR4302536.5992837/94‑1 (MQ=60)
                                                          CTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATAT                                     <  SRR4302536.4716274/94‑1 (MQ=60)
                                                           TGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATA                                    <  SRR4302536.1608996/94‑1 (MQ=60)
                                                            GGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTATTTATTCAGGAAATAAATATAT                                   <  SRR4302536.3899548/94‑1 (MQ=60)
                                                            GGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATAT                                   <  SRR4302536.6705874/94‑1 (MQ=60)
                                                             GGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATT                                  <  SRR4302536.5399816/94‑1 (MQ=60)
                                                              GCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTC                                 <  SRR4302536.1039840/94‑1 (MQ=60)
                                                               GGATGGCAGTTTCAATCAGTTCTTGCCGAGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCG                                <  SRR4302536.2282988/94‑1 (MQ=60)
                                                                 ATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGAC                              <  SRR4302536.759085/94‑1 (MQ=60)
                                                                  TGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACA                             <  SRR4302536.4876172/94‑1 (MQ=60)
                                                                     CAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAG                          <  SRR4302536.2342949/94‑1 (MQ=60)
                                                                      AGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGA                         <  SRR4302536.5135587/94‑1 (MQ=60)
                                                                         TTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTG                      <  SRR4302536.207999/94‑1 (MQ=60)
                                                                         TTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTG                      <  SRR4302536.4233883/94‑1 (MQ=60)
                                                                         TTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTG                      <  SRR4302536.2344858/94‑1 (MQ=60)
                                                                          TCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGA                     <  SRR4302536.1118530/94‑1 (MQ=60)
                                                                           CAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAG                    <  SRR4302536.462683/94‑1 (MQ=60)
                                                                               CAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAA                <  SRR4302536.1059447/94‑1 (MQ=60)
                                                                               CAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAA                <  SRR4302536.3454741/94‑1 (MQ=60)
                                                                               CAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAA                <  SRR4302536.5068036/94‑1 (MQ=60)
                                                                                 GTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATA              <  SRR4302536.4692877/94‑1 (MQ=60)
                                                                                 GTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATA              <  SRR4302536.3973146/94‑1 (MQ=60)
                                                                                  TTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAG             <  SRR4302536.4390494/94‑1 (MQ=60)
                                                                                     TTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGA          <  SRR4302536.589532/94‑1 (MQ=60)
                                                                                       GCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAG        <  SRR4302536.5276173/94‑1 (MQ=60)
                                                                                         CGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGT      <  SRR4302536.3394617/94‑1 (MQ=60)
                                                                                          GGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTT     <  SRR4302536.1792740/94‑1 (MQ=60)
                                                                                          GGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTT     <  SRR4302536.1590032/94‑1 (MQ=60)
                                                                                          GGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTT     <  SRR4302536.6366283/94‑1 (MQ=60)
                                                                                           GGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTA    <  SRR4302536.179961/94‑1 (MQ=60)
                                                                                           GGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTA    <  SRR4302536.1706868/94‑1 (MQ=60)
                                                                                            GCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAA   <  SRR4302536.257025/94‑1 (MQ=60)
                                                                                             CCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAAT  <  SRR4302536.1927641/94‑1 (MQ=60)
                                                                                             CCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAAT  <  SRR4302536.3253732/94‑1 (MQ=60)
                                                                                             |                                                                                             
CGTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAAT  >  NC_000913/3410976‑3411162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑