Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,418,840 +G coding (1070/1089 nt) b3269 → putative transport system permease protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,418,8371.G98.9% 868.8 / 0.9 269coding (1067/1089 nt)b3269putative transport system permease protein
Reads supporting (aligned to +/- strand):  ref base . (1/2);  new base G (135/131);  total (136/133)
Fisher's exact test for biased strand distribution p-value = 6.19e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01

Only 100 of 300 total aligned reads displayed.

GTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAC  >  NC_000913/3418745‑3418924
                                                                                             |                                                                                       
gTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAc                                                                                          >  2:4870815/1‑93 (MQ=255)
gTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAc                                                                                          <  1:6181882/93‑1 (MQ=255)
  aTCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg                                                                                       <  1:1916942/93‑1 (MQ=255)
   tctcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑ggg                                                                                      >  1:6602363/1‑93 (MQ=255)
      cAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑ggggga                                                                                   >  2:5169431/1‑90 (MQ=255)
      cAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑ggggca                                                                                   >  2:5086441/1‑90 (MQ=255)
       aaCATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑ggggcaa                                                                                  >  2:4996175/1‑89 (MQ=255)
          aTCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGcc                                                                                >  2:3442321/1‑93 (MQ=255)
           tCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCa                                                                               >  1:1611957/1‑93 (MQ=255)
             gTCAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATc                                                                             <  1:2927551/93‑1 (MQ=255)
             gTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCGGACGGGGGAAGCCATc                                                                             >  2:832686/1‑93 (MQ=255)
             gTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATc                                                                             <  2:3708385/93‑1 (MQ=255)
             gTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATc                                                                             <  2:4472142/93‑1 (MQ=255)
              tCAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCg                                                                            <  2:94285/93‑1 (MQ=255)
              tCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCg                                                                            <  1:4532045/93‑1 (MQ=255)
                 aaaaCTCCTCTCTGGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCAGACGGGGCAAGCCATCgaga                                                                         <  1:1820929/93‑1 (MQ=255)
                  aaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGAc                                                                        >  2:5948011/1‑93 (MQ=255)
                  aaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGAc                                                                        >  2:6184607/1‑93 (MQ=255)
                   atctccgcGCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACg                                                                       <  1:4286226/91‑1 (MQ=255)
                    aCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGa                                                                      >  2:1490856/1‑93 (MQ=255)
                    aCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGa                                                                      >  2:1827276/1‑93 (MQ=255)
                     ctcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGAt                                                                     >  1:2103666/1‑93 (MQ=255)
                     ctcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGAt                                                                     >  1:819194/1‑93 (MQ=255)
                      tcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATa                                                                    >  2:5072755/1‑93 (MQ=255)
                      tcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATa                                                                    <  2:6077026/93‑1 (MQ=255)
                      tcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATa                                                                    >  1:41583/1‑93 (MQ=255)
                      tcctcTCTGGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATa                                                                    <  1:6337554/93‑1 (MQ=255)
                         tctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGcc                                                                 >  2:1864844/1‑93 (MQ=255)
                          ctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCa                                                                >  1:1578957/1‑93 (MQ=255)
                           tctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCAt                                                               >  1:5938837/1‑93 (MQ=255)
                              tGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGAc                                                            <  2:3623586/93‑1 (MQ=255)
                               gccgccGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGAcc                                                           >  1:3355545/1‑93 (MQ=255)
                                ccgccgCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCa                                                          <  2:2212854/93‑1 (MQ=255)
                                   ccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGt                                                       >  1:2674794/1‑93 (MQ=255)
                                    cgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTc                                                      <  2:235455/93‑1 (MQ=255)
                                    cgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTc                                                      >  1:5665051/1‑93 (MQ=255)
                                       tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGt                                                   >  1:3601234/1‑93 (MQ=255)
                                        aTTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTc                                                  <  1:6077276/93‑1 (MQ=255)
                                         ttGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCt                                                 <  1:1001494/93‑1 (MQ=255)
                                         ttGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCt                                                 <  2:1162625/93‑1 (MQ=255)
                                          tGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTa                                                <  2:5727413/93‑1 (MQ=255)
                                           ggCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTAt                                               >  2:4075853/1‑93 (MQ=255)
                                           ggCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTAt                                               >  2:2769087/1‑93 (MQ=255)
                                            gCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATc                                              <  2:2419149/93‑1 (MQ=255)
                                            gCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATc                                              <  2:807809/93‑1 (MQ=255)
                                             cTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCt                                             <  1:3061618/93‑1 (MQ=255)
                                             cTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCt                                             >  1:3470906/1‑93 (MQ=255)
                                              tATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTg                                            <  1:5426007/93‑1 (MQ=255)
                                              tATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTg                                            <  2:3070427/93‑1 (MQ=255)
                                               aTCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGa                                           >  1:2617522/1‑93 (MQ=255)
                                                tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt                                          >  1:5746382/1‑93 (MQ=255)
                                                tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt                                          <  1:1143165/93‑1 (MQ=255)
                                                 cccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAtt                                         <  2:3120830/93‑1 (MQ=255)
                                                 cccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAtt                                         <  2:6383550/93‑1 (MQ=255)
                                                   cGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTAt                                       <  1:6412191/93‑1 (MQ=255)
                                                    gATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc                                      <  1:5103805/93‑1 (MQ=255)
                                                     atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa                                     >  2:2563577/1‑93 (MQ=255)
                                                     atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa                                     >  1:1754996/1‑93 (MQ=255)
                                                     atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa                                     <  2:5580075/93‑1 (MQ=255)
                                                      tatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAg                                    >  1:4019661/1‑93 (MQ=255)
                                                       atGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGc                                   >  1:4309571/1‑93 (MQ=255)
                                                        tGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGcc                                  <  1:4830376/93‑1 (MQ=255)
                                                         ggTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCt                                 >  1:438864/1‑93 (MQ=255)
                                                         ggTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCt                                 <  2:561473/93‑1 (MQ=255)
                                                             tCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACt                             <  2:3586174/93‑1 (MQ=255)
                                                              cGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTa                            >  2:663921/1‑93 (MQ=255)
                                                                cTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtc                          <  2:5823713/93‑1 (MQ=255)
                                                                cTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtc                          <  2:4554274/93‑1 (MQ=255)
                                                                cTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtc                          <  2:3812496/93‑1 (MQ=255)
                                                                cTGTTTGCCGGCACCGTGCTGAACCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtc                          <  1:5229630/93‑1 (MQ=255)
                                                                 tGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct                         >  2:3977303/1‑93 (MQ=255)
                                                                 tGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct                         >  2:696113/1‑93 (MQ=255)
                                                                 tGTTTGCCGGCACCGTGCTGAACCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct                         <  2:134910/93‑1 (MQ=255)
                                                                  gTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtctc                        >  1:4800957/1‑93 (MQ=255)
                                                                  gTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCCGTCTATCTGATTATCAGCCTGACTAtctc                        <  1:3272569/93‑1 (MQ=255)
                                                                    ttGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgc                      <  1:1249014/93‑1 (MQ=255)
                                                                       ccGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgc                   <  2:3218231/93‑1 (MQ=255)
                                                                        cgccACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgct                  <  2:2241136/90‑1 (MQ=255)
                                                                        cGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgct                  <  2:2932710/93‑1 (MQ=255)
                                                                        cGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgct                  >  2:4707197/1‑93 (MQ=255)
                                                                         ggCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGctgatg                 >  1:704891/1‑93 (MQ=255)
                                                                          gCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtga                <  2:3914925/93‑1 (MQ=255)
                                                                           cACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgat               <  2:5351549/93‑1 (MQ=255)
                                                                            aCCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgatg              >  1:3795878/1‑93 (MQ=255)
                                                                            aCCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgatg              >  1:876894/1‑93 (MQ=255)
                                                                            aCCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgatg              >  2:1979031/1‑93 (MQ=255)
                                                                               gTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAat           >  1:2391864/1‑93 (MQ=255)
                                                                               gTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAat           <  2:520380/93‑1 (MQ=255)
                                                                               gTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAat           >  1:3659855/1‑93 (MQ=255)
                                                                                tGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAata          <  1:2236600/93‑1 (MQ=255)
                                                                                   tGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCt       <  1:5544867/93‑1 (MQ=255)
                                                                                   tGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCt       >  1:984890/1‑93 (MQ=255)
                                                                                    gAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCta      >  1:168753/1‑93 (MQ=255)
                                                                                    gAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCta      >  1:3938857/1‑93 (MQ=255)
                                                                                     aaTCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCtat     <  1:105235/93‑1 (MQ=255)
                                                                                      aTCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCtata    <  2:5421399/93‑1 (MQ=255)
                                                                                       tCAGACGGGGCAAGCCATCGAGACGATAGTCATGACCATATCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATaa   >  1:4080808/1‑93 (MQ=255)
                                                                                       tCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATaa   >  2:4311479/1‑93 (MQ=255)
                                                                                       tCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATaa   >  2:2703166/1‑93 (MQ=255)
                                                                                        cAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAc  >  1:4237889/1‑93 (MQ=255)
                                                                                             |                                                                                       
GTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAC  >  NC_000913/3418745‑3418924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGC  >  NC_000913/3418747‑3418930
                                                                                               |                                                                                          
ATCTCAACATCGTCAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAAGCAGAC‑G‑GG                                                                                            <  SRR4302536.1788521/94‑1 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GG                                                                                            <  SRR4302536.1974620/94‑1 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GG                                                                                            >  SRR4302536.6798720/1‑94 (MQ=60)
    CAGCATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAA                                                                                         >  SRR4302536.6813318/1‑94 (MQ=60)
     AACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAG                                                                                        >  SRR4302536.4393331/1‑94 (MQ=60)
     AACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAG                                                                                        >  SRR4302536.4237168/1‑94 (MQ=60)
     AACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAG                                                                                        >  SRR4302536.2376416/1‑94 (MQ=60)
       CATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCC                                                                                      >  SRR4302536.1704251/1‑94 (MQ=60)
        ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCA                                                                                     >  SRR4302536.388273/1‑94 (MQ=60)
        ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCA                                                                                     <  SRR4302536.3710626/94‑1 (MQ=60)
        ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCA                                                                                     >  SRR4302536.1658953/1‑94 (MQ=60)
          CGTCAAAAACTCCTCTCTTGCCGCCGCTATTGCCTATCCCGATATGGTTTCGCTGGTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCGTC                                                                                   >  SRR4302536.966293/1‑94 (MQ=60)
           GTCAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCG                                                                                  <  SRR4302536.3013951/94‑1 (MQ=60)
           GTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCG                                                                                  <  SRR4302536.2708495/94‑1 (MQ=60)
           GTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCG                                                                                  >  SRR4302536.3559767/1‑94 (MQ=60)
           GTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCG                                                                                  >  SRR4302536.6258507/1‑94 (MQ=60)
            TCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGA                                                                                 >  SRR4302536.4259466/1‑94 (MQ=60)
            TCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGA                                                                                 <  SRR4302536.4667925/94‑1 (MQ=60)
            TCAAAAACTCCTCTCTTGCCGCCGCTATTAGCTATCCCGATTTGGTTTCGCCGGTTTCCCGCACCGGGCTGAATCAGAC‑G‑GGgaaagccaatca                                                                                >  SRR4302536.1805105/1‑82 (MQ=55)
              AAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGA                                                                               >  SRR4302536.5380109/1‑94 (MQ=60)
               AAACCTCCTCTCTTGCCGCCACTATTGGCTATCGCGATATGTTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGCCGG‑GGCAAGCCATAGAGAC                                                                              <  SRR4302536.6102103/94‑1 (MQ=60)
               AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGAACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGAC                                                                              >  SRR4302536.2184771/1‑94 (MQ=60)
               AAAACTCCTCTCTGGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGAC                                                                              <  SRR4302536.1875861/94‑1 (MQ=60)
                AAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACG                                                                             >  SRR4302536.786130/1‑94 (MQ=60)
                AAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACG                                                                             >  SRR4302536.6045410/1‑94 (MQ=60)
                AAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACG                                                                             <  SRR4302536.4528252/94‑1 (MQ=60)
                AAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACG                                                                             <  SRR4302536.30316/94‑1 (MQ=60)
                 atctccgcgCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGA                                                                            <  SRR4302536.4414250/85‑1 (MQ=60)
                 AACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGA                                                                            >  SRR4302536.87940/1‑94 (MQ=60)
                  ACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGAT                                                                           >  SRR4302536.6519122/1‑94 (MQ=60)
                  ACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGAT                                                                           >  SRR4302536.2166911/1‑94 (MQ=60)
                  ACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGAT                                                                           >  SRR4302536.843308/1‑94 (MQ=60)
                  ACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGAT                                                                           >  SRR4302536.5900828/1‑94 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATA                                                                          <  SRR4302536.4434323/94‑1 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATA                                                                          >  SRR4302536.42735/1‑94 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATA                                                                          <  SRR4302536.6805580/94‑1 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATA                                                                          <  SRR4302536.6094762/94‑1 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATA                                                                          >  SRR4302536.5778648/1‑94 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATA                                                                          >  SRR4302536.1058848/1‑94 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATA                                                                          <  SRR4302536.2444596/94‑1 (MQ=60)
                    TCCTCTCTGGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAG                                                                         <  SRR4302536.6526307/94‑1 (MQ=60)
                     CCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCCAGACGATAGC                                                                        >  SRR4302536.4490938/1‑94 (MQ=60)
                       TCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCA                                                                      >  SRR4302536.1625213/1‑94 (MQ=60)
                       TCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCA                                                                      <  SRR4302536.338204/94‑1 (MQ=60)
                        CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCAT                                                                     <  SRR4302536.3433368/94‑1 (MQ=60)
                        CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCAT                                                                     >  SRR4302536.2287214/1‑94 (MQ=60)
                        CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCAT                                                                     >  SRR4302536.6115759/1‑94 (MQ=60)
                         TCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATG                                                                    <  SRR4302536.5756263/94‑1 (MQ=60)
                          CTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGA                                                                   >  SRR4302536.3329816/1‑94 (MQ=60)
                          CTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGA                                                                   >  SRR4302536.4667726/1‑94 (MQ=60)
                          CTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGA                                                                   <  SRR4302536.634431/94‑1 (MQ=60)
                            TGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACC                                                                 <  SRR4302536.6289763/94‑1 (MQ=60)
                            TGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACC                                                                 >  SRR4302536.1997492/1‑94 (MQ=60)
                            TGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACC                                                                 >  SRR4302536.3455131/1‑94 (MQ=60)
                             GCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCA                                                                >  SRR4302536.5502743/1‑94 (MQ=60)
                              CCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCAT                                                               <  SRR4302536.4139623/94‑1 (MQ=60)
                                GCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGT                                                             >  SRR4302536.2754750/1‑94 (MQ=60)
                                GCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGT                                                             <  SRR4302536.6331780/94‑1 (MQ=60)
                                 CCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTC                                                            >  SRR4302536.5833426/1‑94 (MQ=60)
                                   GCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGG                                                          <  SRR4302536.1045922/94‑1 (MQ=60)
                                    CTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGT                                                         >  SRR4302536.3708931/1‑94 (MQ=60)
                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTT                                                        >  SRR4302536.4203505/1‑94 (MQ=60)
                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTC                                                        >  SRR4302536.870758/1‑94 (MQ=60)
                                      ATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGGAAGCCATCGAGACGATAGCCATGACCATGTCGGTCT                                                       >  SRR4302536.4105672/1‑94 (MQ=60)
                                      ATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCT                                                       <  SRR4302536.6258557/94‑1 (MQ=60)
                                      ATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCT                                                       >  SRR4302536.716909/1‑94 (MQ=60)
                                      ATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GAGGCAAGCCATCGAGACGATCGCCACGACCATGTCGGTCT                                                       >  SRR4302536.119365/1‑94 (MQ=60)
                                       TTGGCTATCCCGATATGTTTTCCCTGTTGGCCGACACCGTGCGGAACCAGACGG‑GGCAAGCCATCGAGACGATAGCTATGACCATGTCGGTCTA                                                      <  SRR4302536.2596811/94‑1 (MQ=57)
                                       TTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTA                                                      <  SRR4302536.1031039/94‑1 (MQ=60)
                                       TTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTA                                                      >  SRR4302536.4339757/1‑94 (MQ=60)
                                        TGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTAT                                                     >  SRR4302536.2163735/1‑94 (MQ=60)
                                         GGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATC                                                    <  SRR4302536.6540152/94‑1 (MQ=60)
                                          GCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCT                                                   >  SRR4302536.3574357/1‑94 (MQ=60)
                                           CTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTG                                                  <  SRR4302536.3262285/94‑1 (MQ=60)
                                           CTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTG                                                  <  SRR4302536.3151434/94‑1 (MQ=60)
                                           CTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTG                                                  <  SRR4302536.2553808/94‑1 (MQ=60)
                                            TATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGA                                                 >  SRR4302536.6637345/1‑94 (MQ=60)
                                            TATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGA                                                 <  SRR4302536.5588225/94‑1 (MQ=60)
                                            TATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGA                                                 >  SRR4302536.2696052/1‑94 (MQ=60)
                                             ATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT                                                >  SRR4302536.5917327/1‑94 (MQ=60)
                                             ATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT                                                <  SRR4302536.1929301/94‑1 (MQ=60)
                                             ATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT                                                >  SRR4302536.1264408/1‑94 (MQ=60)
                                             ATCCAGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT                                                <  SRR4302536.368050/94‑1 (MQ=60)
                                              TCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATT                                               <  SRR4302536.1177545/94‑1 (MQ=60)
                                                CCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTAT                                             <  SRR4302536.4051906/94‑1 (MQ=60)
                                                CCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTAT                                             >  SRR4302536.4403125/1‑94 (MQ=60)
                                                 CGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATC                                            <  SRR4302536.6603770/94‑1 (MQ=60)
                                                 CGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATC                                            >  SRR4302536.1640719/1‑94 (MQ=60)
                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                           >  SRR4302536.2547000/1‑94 (MQ=60)
                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                           <  SRR4302536.5256383/94‑1 (MQ=60)
                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                           >  SRR4302536.1807115/1‑94 (MQ=60)
                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                           <  SRR4302536.3666024/94‑1 (MQ=60)
                                                  CATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                           <  SRR4302536.3063512/94‑1 (MQ=60)
                                                   ATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG                                          >  SRR4302536.4138914/1‑94 (MQ=60)
                                                   ATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG                                          <  SRR4302536.5682751/94‑1 (MQ=60)
                                                   ATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG                                          >  SRR4302536.1584759/1‑94 (MQ=60)
                                                   ATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG                                          <  SRR4302536.2708269/94‑1 (MQ=60)
                                                   ATATGGATTCGCTGTTTGACTGCACCGTGCTGAATCAGACGG‑GGCAATCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG                                          >  SRR4302536.3776271/1‑94 (MQ=60)
                                                    TATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGC                                         >  SRR4302536.4438524/1‑94 (MQ=60)
                                                     ATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCC                                        >  SRR4302536.4034915/1‑94 (MQ=60)
                                                     ATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCC                                        >  SRR4302536.5017416/1‑94 (MQ=60)
                                                      TGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCT                                       >  SRR4302536.1645064/1‑94 (MQ=60)
                                                      TGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCT                                       >  SRR4302536.450400/1‑94 (MQ=60)
                                                      TGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCT                                       <  SRR4302536.4723172/94‑1 (MQ=60)
                                                      TGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCT                                       <  SRR4302536.4975729/94‑1 (MQ=60)
                                                        GTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGA                                     >  SRR4302536.539822/1‑94 (MQ=60)
                                                        GTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGA                                     >  SRR4302536.436997/1‑94 (MQ=60)
                                                           TCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTA                                  <  SRR4302536.4960525/94‑1 (MQ=60)
                                                             GCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATC                                >  SRR4302536.1135534/1‑94 (MQ=60)
                                                              CTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCT                               <  SRR4302536.2981232/94‑1 (MQ=60)
                                                              CTGTTTGCCGGCACCGTGCTGAACCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCT                               <  SRR4302536.5385455/94‑1 (MQ=60)
                                                               TGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTC                              >  SRR4302536.4945454/1‑94 (MQ=60)
                                                               TGTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTC                              <  SRR4302536.1008105/94‑1 (MQ=60)
                                                                GTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCG                             <  SRR4302536.3532512/94‑1 (MQ=60)
                                                                GTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCG                             >  SRR4302536.2842007/1‑94 (MQ=60)
                                                                GTTTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCCGTCTATCTGATTATCAGCCTGACTATCTCG                             <  SRR4302536.3368688/94‑1 (MQ=60)
                                                                  TTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCT                           <  SRR4302536.675748/94‑1 (MQ=60)
                                                                  TTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCT                           <  SRR4302536.1286515/94‑1 (MQ=60)
                                                                  TTGCCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCT                           <  SRR4302536.177940/94‑1 (MQ=60)
                                                                     CCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCT                        >  SRR4302536.5604242/1‑94 (MQ=60)
                                                                     CCGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCT                        >  SRR4302536.1663963/1‑94 (MQ=60)
                                                                      CGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTG                       <  SRR4302536.4169517/94‑1 (MQ=60)
                                                                      CGGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGATG                       >  SRR4302536.725487/1‑94 (MQ=60)
                                                                       GGCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGA                      >  SRR4302536.1365726/1‑94 (MQ=60)
                                                                        GCACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGAT                     <  SRR4302536.5854455/94‑1 (MQ=60)
                                                                         CACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATG                    >  SRR4302536.3727164/1‑94 (MQ=60)
                                                                         CACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATG                    >  SRR4302536.3909096/1‑94 (MQ=60)
                                                                         CACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATG                    >  SRR4302536.902729/1‑94 (MQ=60)
                                                                         CACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATG                    >  SRR4302536.1100703/1‑94 (MQ=60)
                                                                          ACCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGA                   >  SRR4302536.4515257/1‑94 (MQ=60)
                                                                           CCGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAA                  <  SRR4302536.4781551/94‑1 (MQ=60)
                                                                            CGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAAT                 >  SRR4302536.3769266/1‑94 (MQ=60)
                                                                            CGTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAAT                 >  SRR4302536.2464278/1‑94 (MQ=60)
                                                                             GTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATA                <  SRR4302536.6568849/94‑1 (MQ=60)
                                                                             GTGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATA                <  SRR4302536.4077196/94‑1 (MQ=60)
                                                                              TGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATAT               >  SRR4302536.5074116/1‑94 (MQ=60)
                                                                              TGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATAT               <  SRR4302536.2304257/94‑1 (MQ=60)
                                                                              TGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATAT               <  SRR4302536.6473626/94‑1 (MQ=60)
                                                                              TGCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATAA               <  SRR4302536.531460/94‑1 (MQ=60)
                                                                              GGCTGAATCAGAC‑GAGGCAAACAATCGAGACGATAGCAATGACCATGTGGGTCTATCTGATTATCAGCCTGGCTATCTCGCTGCTGATGAATAT               <  SRR4302536.2315553/94‑1 (MQ=60)
                                                                               GCTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATC              <  SRR4302536.742353/94‑1 (MQ=60)
                                                                                CTGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCT             >  SRR4302536.1013948/1‑94 (MQ=60)
                                                                                 TGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTA            >  SRR4302536.173151/1‑94 (MQ=60)
                                                                                 TGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTA            >  SRR4302536.4055885/1‑94 (MQ=60)
                                                                                 TGAATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTA            <  SRR4302536.5710088/94‑1 (MQ=60)
                                                                                   AATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATA          <  SRR4302536.108046/94‑1 (MQ=60)
                                                                                   AATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATA          <  SRR4302536.4973407/94‑1 (MQ=60)
                                                                                    atcagtcgG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA         <  SRR4302536.2093635/86‑1 (MQ=60)
                                                                                    aacagacgG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA         <  SRR4302536.4419601/86‑1 (MQ=60)
                                                                                    ATCAGACGG‑GGCAAGCCATCGAGACGATAGTCATGACCATATCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA         >  SRR4302536.4201782/1‑94 (MQ=60)
                                                                                    ATCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA         <  SRR4302536.1833530/94‑1 (MQ=60)
                                                                                     TCAGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAC        >  SRR4302536.4364049/1‑94 (MQ=60)
                                                                                       AGACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCG      <  SRR4302536.5356699/94‑1 (MQ=60)
                                                                                        GACGG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGC     >  SRR4302536.5338542/1‑94 (MQ=60)
                                                                                          tgG‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCG   >  SRR4302536.6430502/3‑94 (MQ=60)
                                                                                          G‑G‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGC  <  SRR4302536.6200854/94‑1 (MQ=60)
                                                                                          G‑G‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGC  >  SRR4302536.3787660/1‑94 (MQ=60)
                                                                                          G‑G‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGC  >  SRR4302536.2562006/1‑94 (MQ=60)
                                                                                          G‑G‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGC  >  SRR4302536.2237548/1‑94 (MQ=60)
                                                                                               |                                                                                          
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGC  >  NC_000913/3418747‑3418930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑