Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,533,972	G→A	A84V (GCG→GTG)	ompR ←	OmpR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,533,972	0	G	A	100.0%	884.0 / NA	244	A84V (GCG→GTG)	ompR	OmpR
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (141/103); total (141/103)

Only 100 of 250 total aligned reads displayed.

CCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATCCAG  >  NC_000913/3533883‑3534063

 cagcagTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGt                                                                                         >  2:6194240/1‑93 (MQ=255)

   gcagTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCa                                                                                       >  1:465558/1‑93 (MQ=255)

       ttCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCAt                                                                                   <  2:4904547/93‑1 (MQ=255)

         cACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATaa                                                                                 >  1:3081198/1‑93 (MQ=255)

             cgGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGAt                                                                             <  2:2845613/93‑1 (MQ=255)

             cgGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGAt                                                                             >  1:2201565/1‑93 (MQ=255)

              gggTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATc                                                                            <  2:768078/93‑1 (MQ=255)

              gggTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATc                                                                            <  1:2506649/93‑1 (MQ=255)

               ggTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCg                                                                           >  1:5103151/1‑93 (MQ=255)

               ggTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCg                                                                           >  2:6331229/1‑93 (MQ=255)

               ggTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCg                                                                           <  1:4973131/93‑1 (MQ=255)

                 ttAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGc                                                                         >  2:2789702/1‑93 (MQ=255)

                  tAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCa                                                                        >  1:3612832/1‑93 (MQ=255)

                  tAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCa                                                                        >  1:4060872/1‑93 (MQ=255)

                  tAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCa                                                                        >  1:506889/1‑93 (MQ=255)

                   aaaCGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCAt                                                                       >  2:552616/1‑93 (MQ=255)

                   aaaCGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCAt                                                                       >  1:5491076/1‑93 (MQ=255)

                   aaaCGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCAt                                                                       <  1:17780/93‑1 (MQ=255)

                   aaaCGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCAt                                                                       <  1:6200549/93‑1 (MQ=255)

                    aaCGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATc                                                                      <  2:381470/93‑1 (MQ=255)

                    aaCGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATc                                                                      >  1:4446436/1‑93 (MQ=255)

                    aaCGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATc                                                                      >  2:1781614/1‑93 (MQ=255)

                    aaCGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGAACGGCATc                                                                      <  1:6362152/93‑1 (MQ=255)

                      cGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCATTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCgg                                                                    <  2:4820138/93‑1 (MQ=255)

                        gTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGt                                                                  <  1:3535611/93‑1 (MQ=255)

                        gTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGt                                                                  <  1:4304832/93‑1 (MQ=255)

                        gTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGt                                                                  <  1:1514725/93‑1 (MQ=255)

                        gTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGt                                                                  >  1:4686784/1‑93 (MQ=255)

                          tttGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTg                                                                <  1:4096373/93‑1 (MQ=255)

                           ttGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGc                                                               >  2:3202921/1‑93 (MQ=255)

                            tGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGct                                                              <  1:6051814/93‑1 (MQ=255)

                             ggAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGctc                                                             <  1:3354094/93‑1 (MQ=255)

                             ggAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGctc                                                             >  1:1350122/1‑93 (MQ=255)

                               aaTGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTg                                                           >  2:3745838/1‑93 (MQ=255)

                                aTGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGa                                                          >  2:3871267/1‑93 (MQ=255)

                                 tGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGAc                                                         >  1:2914572/1‑93 (MQ=255)

                                  gTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACt                                                        <  2:2968261/93‑1 (MQ=255)

                                   tAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTa                                                       <  1:2643458/93‑1 (MQ=255)

                                   tAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTa                                                       >  2:463108/1‑93 (MQ=255)

                                     gtcgtcAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACg                                                     >  1:3827515/1‑93 (MQ=255)

                                     gtcgtcAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACg                                                     >  2:5443267/1‑93 (MQ=255)

                                     gtcgtcAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACg                                                     >  2:4058892/1‑93 (MQ=255)

                                      tcgtcAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGa                                                    <  2:6634492/93‑1 (MQ=255)

                                      tcgtcAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGa                                                    >  2:2466710/1‑93 (MQ=255)

                                          cAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGAc                                                >  2:6517560/1‑93 (MQ=255)

                                            gcgcCAATCTCCAGGCCTACGATACGGTCCACTTCTGCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGt                                              <  1:2799798/93‑1 (MQ=255)

                                             cgcCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTc                                             <  1:1110306/93‑1 (MQ=255)

                                              gcCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCg                                            >  1:692535/1‑93 (MQ=255)

                                                 aaTCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCa                                         >  2:247933/1‑93 (MQ=255)

                                                  aTCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCaa                                        >  1:5756251/1‑93 (MQ=255)

                                                   tctcCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCaaa                                       >  1:6623518/1‑93 (MQ=255)

                                                   tctcCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCaaa                                       >  1:4773822/1‑93 (MQ=255)

                                                    ctcCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAAt                                      <  2:892899/93‑1 (MQ=255)

                                                    ctcCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAAt                                      >  1:2163273/1‑93 (MQ=255)

                                                     tcCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGCTTGCTCTGACTACGAAGACGTCGGCAAATc                                     >  2:1028241/1‑93 (MQ=255)

                                                      ccAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCg                                    <  2:4946354/93‑1 (MQ=255)

                                                       cAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGa                                   <  1:650472/93‑1 (MQ=255)

                                                         ggCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACa                                 >  2:4247385/1‑93 (MQ=255)

                                                         ggCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACa                                 >  2:3413266/1‑93 (MQ=255)

                                                          gCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACaa                                >  2:4017669/1‑93 (MQ=255)

                                                            cTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGc                              >  1:6153615/1‑93 (MQ=255)

                                                            cTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGc                              >  2:3309376/1‑93 (MQ=255)

                                                               cGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCAt                           <  1:4609621/93‑1 (MQ=255)

                                                                gATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATc                          <  1:5618989/93‑1 (MQ=255)

                                                                 aTACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCt                         >  1:5264141/1‑93 (MQ=255)

                                                                  tACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCtt                        >  1:1879150/1‑93 (MQ=255)

                                                                  tACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCtt                        <  2:5137659/93‑1 (MQ=255)

                                                                   aCGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTc                       <  2:4453731/93‑1 (MQ=255)

                                                                   aCGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTc                       >  2:5634632/1‑93 (MQ=255)

                                                                   aCGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTc                       >  2:5903019/1‑93 (MQ=255)

                                                                   aCGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTc                       <  1:2002153/93‑1 (MQ=255)

                                                                   aCGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTc                       <  2:4786873/93‑1 (MQ=255)

                                                                    cGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCa                      >  1:5579509/1‑93 (MQ=255)

                                                                     ggTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCAc                     >  2:1549812/1‑93 (MQ=255)

                                                                      gTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCAcc                    >  2:30474/1‑93 (MQ=255)

                                                                       tCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTTCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCa                   <  1:4853180/93‑1 (MQ=255)

                                                                        ccACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAg                  <  2:6413861/93‑1 (MQ=255)

                                                                         cACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAgg                 >  2:1103377/1‑93 (MQ=255)

                                                                         cACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAgg                 <  2:5245682/93‑1 (MQ=255)

                                                                         cACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAgg                 <  1:1272943/93‑1 (MQ=255)

                                                                          aCTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGt                >  2:5752238/1‑93 (MQ=255)

                                                                          aCTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGt                >  2:2171/1‑93 (MQ=255)

                                                                            ttcttcCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTaa              >  1:2734797/1‑93 (MQ=255)

                                                                             tcttcCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAAc             >  1:5827139/1‑93 (MQ=255)

                                                                              cttcCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACa            >  1:434565/1‑93 (MQ=255)

                                                                                 ccccTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTa         >  1:3164090/1‑93 (MQ=255)

                                                                                 ccccTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTa         <  2:1272966/93‑1 (MQ=255)

                                                                                 ccccTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGAAGTCGGCAAATCGTCAAGCCATCCTCACCAGGTAACATTa         >  1:1019441/1‑93 (MQ=255)

                                                                                 ccccTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTAACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTa         >  2:3558204/1‑93 (MQ=255)

                                                                                 ccccTTGCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTa         <  1:2823292/93‑1 (MQ=255)

                                                                                  cccTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTaa        >  1:6428688/1‑93 (MQ=255)

                                                                                   ccTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGCAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACACTaaa       >  1:2457255/1‑93 (MQ=255)

                                                                                   ccTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTaaa       >  1:4145683/1‑93 (MQ=255)

                                                                                   ccTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTaaa       >  1:855181/1‑93 (MQ=255)

                                                                                   ccTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTaaa       >  2:162919/1‑93 (MQ=255)

                                                                                    cTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAAt      <  2:6054628/93‑1 (MQ=255)

                                                                                     tttCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATc     >  1:3970043/1‑93 (MQ=255)

                                                                                     tttCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATc     <  2:1961328/93‑1 (MQ=255)

                                                                                     tttCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATc     >  2:5591069/1‑93 (MQ=255)

                                                                                      ttCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATcc    <  1:814272/93‑1 (MQ=255)

CCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATCCAG  >  NC_000913/3533883‑3534063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATCCAGTA  >  NC_000913/3533880‑3534065

GGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCAC                                                                                              >  SRR4302536.5608785/1‑94 (MQ=60)

GGGCCAGCAGTTCACGCGGGTTAAACGGTGTTGGAATGTAGGCGGCAGCGCCAATCTCCAGGCGTACGATACGGTCCGCTTCTTCCCCTTTCAC                                                                                              >  SRR4302536.5336715/1‑94 (MQ=60)

 GGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACC                                                                                             <  SRR4302536.3992117/94‑1 (MQ=60)

  GCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCG                                                                                            >  SRR4302536.691275/1‑94 (MQ=60)

   CCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGT                                                                                           >  SRR4302536.4228281/1‑94 (MQ=60)

    CAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTC                                                                                          <  SRR4302536.4571815/94‑1 (MQ=60)

    CAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTC                                                                                          >  SRR4302536.5724195/1‑94 (MQ=60)

    CAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTC                                                                                          <  SRR4302536.2474110/94‑1 (MQ=60)

     AGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCA                                                                                         >  SRR4302536.477707/1‑94 (MQ=60)

     AGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCA                                                                                         >  SRR4302536.2562836/1‑94 (MQ=60)

          TTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATA                                                                                    <  SRR4302536.995877/94‑1 (MQ=60)

          TTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATA                                                                                    <  SRR4302536.4971414/94‑1 (MQ=60)

           TCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAA                                                                                   >  SRR4302536.3171364/1‑94 (MQ=60)

           TCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAA                                                                                   <  SRR4302536.5575696/94‑1 (MQ=60)

           TCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAA                                                                                   <  SRR4302536.6378592/94‑1 (MQ=60)

           TCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAA                                                                                   <  SRR4302536.6670579/94‑1 (MQ=60)

               GCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGAT                                                                               <  SRR4302536.2914763/94‑1 (MQ=60)

               GCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGAT                                                                               >  SRR4302536.2268027/1‑94 (MQ=60)

                 GGGTTAAACGGTTTTGGAATGTAGTCGTCAGCTCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCG                                                                             <  SRR4302536.858637/94‑1 (MQ=60)

                 GGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCG                                                                             >  SRR4302536.5255714/1‑94 (MQ=60)

                 GGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCG                                                                             >  SRR4302536.4155528/1‑94 (MQ=60)

                 GGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCG                                                                             <  SRR4302536.2582231/94‑1 (MQ=60)

                 GGGTT‑AACGGTTTTGGAATTGAGTCGTCAGCGCCAATCTCCCGGCCTAAGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCCG                                                                            >  SRR4302536.2907640/1‑94 (MQ=60)

                  GGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGG                                                                            <  SRR4302536.5122497/94‑1 (MQ=60)

                    TTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCA                                                                          >  SRR4302536.4177514/1‑94 (MQ=60)

                    TTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCA                                                                          >  SRR4302536.3720845/1‑94 (MQ=60)

                    TTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCA                                                                          >  SRR4302536.6570702/1‑94 (MQ=60)

                    TTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCA                                                                          >  SRR4302536.1469998/1‑94 (MQ=60)

                    TTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCA                                                                          >  SRR4302536.4181230/1‑94 (MQ=60)

                    TTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCA                                                                          >  SRR4302536.519897/1‑94 (MQ=60)

                     TAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCAT                                                                         >  SRR4302536.5654971/1‑94 (MQ=60)

                     TAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCAT                                                                         <  SRR4302536.6029126/94‑1 (MQ=60)

                     TAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCAT                                                                         >  SRR4302536.6328713/1‑94 (MQ=60)

                      AAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATC                                                                        <  SRR4302536.18274/94‑1 (MQ=60)

                      AAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATC                                                                        >  SRR4302536.4579955/1‑94 (MQ=60)

                      AAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATC                                                                        <  SRR4302536.6385228/94‑1 (MQ=60)

                       AAGGGTTGTGGAATGTAGTCGTCAGCGCCAATCCCCAGACCTACTAGACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCG                                                                       <  SRR4302536.5121512/94‑1 (MQ=60)

                       AACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCG                                                                       <  SRR4302536.1277124/94‑1 (MQ=60)

                       AACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGAACGGCATCG                                                                       <  SRR4302536.6551701/94‑1 (MQ=60)

                          GGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGT                                                                    >  SRR4302536.4827719/1‑94 (MQ=60)

                          GGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCCACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGT                                                                    >  SRR4302536.5784953/1‑94 (MQ=60)

                           GTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTT                                                                   <  SRR4302536.3641281/94‑1 (MQ=60)

                           GTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTT                                                                   <  SRR4302536.4433573/94‑1 (MQ=60)

                           GTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTT                                                                   >  SRR4302536.4822896/1‑94 (MQ=60)

                           GTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTT                                                                   <  SRR4302536.1559328/94‑1 (MQ=60)

                             TTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGC                                                                 <  SRR4302536.4217839/94‑1 (MQ=60)

                              TTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGGTGCT                                                                >  SRR4302536.5415231/1‑94 (MQ=60)

                               TGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTC                                                               <  SRR4302536.6232353/94‑1 (MQ=60)

                               TGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTC                                                               >  SRR4302536.1390384/1‑94 (MQ=60)

                                GGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCT                                                              <  SRR4302536.288730/94‑1 (MQ=60)

                                GGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCT                                                              <  SRR4302536.3453624/94‑1 (MQ=60)

                                   ATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGAC                                                           >  SRR4302536.3000605/1‑94 (MQ=60)

                                   ATGCAGTCGTCAGCGCCAACCTCCAGTCATACGATACGGTCCACTTCTCCCCCTTCCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGAC                                                           <  SRR4302536.5944464/94‑1 (MQ=60)

                                    TGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACT                                                          >  SRR4302536.5876011/1‑94 (MQ=60)

                                    TGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACT                                                          <  SRR4302536.465662/94‑1 (MQ=60)

                                    TGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACT                                                          >  SRR4302536.1746179/1‑94 (MQ=60)

                                      TAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTAC                                                        <  SRR4302536.2722682/94‑1 (MQ=60)

                                       AGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACG                                                       <  SRR4302536.1105820/94‑1 (MQ=60)

                                       AGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACG                                                       >  SRR4302536.3941542/1‑94 (MQ=60)

                                       AGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCGCTGACTACG                                                       <  SRR4302536.6751207/94‑1 (MQ=60)

                                          CGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAG                                                    <  SRR4302536.1021342/94‑1 (MQ=60)

                                           GTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGA                                                   >  SRR4302536.4330905/1‑94 (MQ=60)

                                           GTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGA                                                   <  SRR4302536.4825411/94‑1 (MQ=60)

                                           GTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGA                                                   <  SRR4302536.3799172/94‑1 (MQ=60)

                                            TCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGAC                                                  >  SRR4302536.3799438/1‑94 (MQ=60)

                                            TCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGAC                                                  <  SRR4302536.4444449/94‑1 (MQ=60)

                                             CAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACG                                                 <  SRR4302536.1455591/94‑1 (MQ=60)

                                             CAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTGCCGCTTTCCCCGTCACCATAAcgatccgcacccggcgcctttgacttcgaagacg                                                 <  SRR4302536.2180772/94‑35 (MQ=60)

                                               GCGCCACTCTCCAGTCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTC                                               <  SRR4302536.2701386/94‑1 (MQ=60)

                                               GCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTGCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTC                                               <  SRR4302536.2882838/94‑1 (MQ=60)

                                                CGTCAATCTCCAGGACTACGATATAGAACACTTGTTCCCCTTTCACCGGCACCATAATGATCGGCATCGGGTTGGTCTGACTACGAAAACGTCG                                              >  SRR4302536.6867876/1‑94 (MQ=36)

                                                CGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCG                                              <  SRR4302536.1143620/94‑1 (MQ=60)

                                                CGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCG                                              <  SRR4302536.221624/94‑1 (MQ=60)

                                                CGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCG                                              >  SRR4302536.712772/1‑94 (MQ=60)

                                                   CAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCA                                           >  SRR4302536.4211497/1‑94 (MQ=60)

                                                   CAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCA                                           >  SRR4302536.790197/1‑94 (MQ=60)

                                                    AATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAA                                          >  SRR4302536.5927485/1‑94 (MQ=60)

                                                    AATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAA                                          <  SRR4302536.4964655/94‑1 (MQ=60)

                                                    AAGCTCCAGGCCGACGATACTGTGCACTTCTTCCCCTTGCACCTTCACCGTAATGATCGGCATCGGGTTGCTCTGGCTACGAAGACGGCGGCAA                                          >  SRR4302536.978291/1‑94 (MQ=46)

                                                     ATCTCCAGGCCTACGATACGGTGCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGCCTACGAAGACGTCGGCAAA                                         >  SRR4302536.2103389/1‑94 (MQ=60)

                                                     ATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAA                                         >  SRR4302536.4917573/1‑94 (MQ=60)

                                                     ATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAA                                         >  SRR4302536.6505881/1‑94 (MQ=60)

                                                     ATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAA                                         >  SRR4302536.6820519/1‑94 (MQ=60)

                                                      TCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAAT                                        >  SRR4302536.2228347/1‑94 (MQ=60)

                                                      TCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAAT                                        <  SRR4302536.318681/94‑1 (MQ=60)

                                                        TCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCG                                      <  SRR4302536.2256905/94‑1 (MQ=60)

                                                        TCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCG                                      <  SRR4302536.5365436/94‑1 (MQ=60)

                                                         CCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGA                                     >  SRR4302536.4786043/1‑94 (MQ=60)

                                                         CCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGA                                     >  SRR4302536.2591645/1‑94 (MQ=60)

                                                          CAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGAC                                    <  SRR4302536.669570/94‑1 (MQ=60)

                                                          CAGGCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGAC                                    >  SRR4302536.3613293/1‑94 (MQ=60)

                                                          CAGGCCTAAGATACGGCCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGTGTTGCTCTGACTACGAAGACGTCGGCAAATCGAC                                    <  SRR4302536.5228683/94‑1 (MQ=60)

                                                           AGGCCTACGATACGTTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACA                                   <  SRR4302536.2057863/94‑1 (MQ=60)

                                                            GCCCTACGATACGCTCCTCTTCTTCCCCTTTCACCGTCACCATAATGAGCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAA                                  <  SRR4302536.2479137/94‑1 (MQ=60)

                                                             GCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAG                                 <  SRR4302536.4436450/94‑1 (MQ=60)

                                                             GCCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAG                                 >  SRR4302536.3367657/1‑94 (MQ=60)

                                                              CCTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGC                                >  SRR4302536.6336943/1‑94 (MQ=60)

                                                               CTACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCC                               <  SRR4302536.468564/94‑1 (MQ=60)

                                                                TACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCA                              >  SRR4302536.3013761/1‑94 (MQ=60)

                                                                TACGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCA                              >  SRR4302536.4234443/1‑94 (MQ=60)

                                                                  CGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATC                            <  SRR4302536.4748088/94‑1 (MQ=60)

                                                                  CGATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATC                            <  SRR4302536.6035687/94‑1 (MQ=60)

                                                                   GATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCT                           <  SRR4302536.5737867/94‑1 (MQ=60)

                                                                   GATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCT                           <  SRR4302536.5785894/94‑1 (MQ=60)

                                                                   GATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCT                           <  SRR4302536.1871106/94‑1 (MQ=60)

                                                                   GATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCT                           >  SRR4302536.5421033/1‑94 (MQ=60)

                                                                    ATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTT                          <  SRR4302536.3693017/94‑1 (MQ=60)

                                                                    ATACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTT                          >  SRR4302536.1935686/1‑94 (MQ=60)

                                                                     TACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTC                         <  SRR4302536.5879710/94‑1 (MQ=60)

                                                                     TACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTC                         <  SRR4302536.6580512/94‑1 (MQ=60)

                                                                      ACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCA                        >  SRR4302536.2986310/1‑94 (MQ=60)

                                                                      ACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCA                        <  SRR4302536.2062411/94‑1 (MQ=60)

                                                                      ACGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCA                        >  SRR4302536.5745564/1‑94 (MQ=60)

                                                                       TGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCAC                       >  SRR4302536.4062065/1‑94 (MQ=60)

                                                                       CGGTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCAC                       >  SRR4302536.2751516/1‑94 (MQ=60)

                                                                         GTCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGGCGGCAAATCGACAAGCCATCCTCACCA                     >  SRR4302536.1259328/1‑94 (MQ=60)

                                                                         GTCCACTACTACCCCTTGCATCGTCACCATAATGATCGGCATCGGGTCACTCGGACTAGGAAGACGGCGGCAAATCGACAAGCCATCTTCACCA                     <  SRR4302536.591624/94‑1 (MQ=50)

                                                                          TCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTTCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAG                    <  SRR4302536.4999213/94‑1 (MQ=60)

                                                                          TCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAG                    <  SRR4302536.3252438/94‑1 (MQ=60)

                                                                          TCCACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAG                    <  SRR4302536.2858433/94‑1 (MQ=60)

                                                                            CACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGT                  <  SRR4302536.1311067/94‑1 (MQ=60)

                                                                            CACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGA                  >  SRR4302536.1368235/1‑94 (MQ=60)

                                                                             ACTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTA                 <  SRR4302536.3474958/94‑1 (MQ=60)

                                                                              CTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAA                >  SRR4302536.2816307/1‑94 (MQ=60)

                                                                              CTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAA                <  SRR4302536.5217143/94‑1 (MQ=60)

                                                                              CTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAA                >  SRR4302536.6370375/1‑94 (MQ=60)

                                                                              CTTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAA                >  SRR4302536.2816308/1‑94 (MQ=60)

                                                                               TTCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAAC               >  SRR4302536.6000739/1‑94 (MQ=60)

                                                                               TTCTTCCCCATTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAAC               >  SRR4302536.6729674/1‑94 (MQ=60)

                                                                                TCTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACA              >  SRR4302536.445995/1‑94 (MQ=60)

                                                                                 CTTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACAT             <  SRR4302536.4858888/94‑1 (MQ=60)

                                                                                  TTCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATT            >  SRR4302536.5092594/1‑94 (MQ=60)

                                                                                   TCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTA           >  SRR4302536.3256776/1‑94 (MQ=60)

                                                                                   TCCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGAAGTCGGCAAATCGTCAAGCCATCCTCACCAGGTAACATTA           >  SRR4302536.1049611/1‑94 (MQ=60)

                                                                                    CCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAA          >  SRR4302536.6620814/1‑94 (MQ=60)

                                                                                    CCCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAA          >  SRR4302536.722527/1‑94 (MQ=60)

                                                                                    CCCCTTGCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAA          <  SRR4302536.2906899/94‑1 (MQ=60)

                                                                                     CCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGCAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACACTAAA         >  SRR4302536.2531456/1‑94 (MQ=60)

                                                                                     CCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAA         >  SRR4302536.1831782/1‑94 (MQ=60)

                                                                                     CCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAA         >  SRR4302536.4268679/1‑94 (MQ=60)

                                                                                     CCCTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAA         >  SRR4302536.880322/1‑94 (MQ=60)

                                                                                       CTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATC       >  SRR4302536.2495767/1‑94 (MQ=60)

                                                                                       CTTTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATC       >  SRR4302536.4087895/1‑94 (MQ=60)

                                                                                         TTCACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATCCA     <  SRR4302536.838156/94‑1 (MQ=60)

                                                                                           CGCCGTCACCATAATGCTCGACATCGGGTTGCTCTGACTACGAAGACTTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATCCAGT   <  SRR4302536.5152048/94‑1 (MQ=60)

                                                                                           CACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATCCAGT   >  SRR4302536.775342/1‑94 (MQ=60)

                                                                                           CACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATCCAGT   >  SRR4302536.4255254/1‑94 (MQ=60)

                                                                                            CCCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATCCAGTA  <  SRR4302536.5259138/94‑1 (MQ=60)

                                                                                            ACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATCCAGTA  >  SRR4302536.1897936/1‑94 (MQ=60)

                                                                                            ACCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATCCAGTA  >  SRR4302536.83061/1‑94 (MQ=60)

GGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCATCGGGTTGCTCTGACTACGAAGACGTCGGCAAATCGACAAGCCATCTTCACCAGGTAACATTAAATCCAGTA  >  NC_000913/3533880‑3534065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`