Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,043,629	A→G	I185T (ATT→ACT)	yihG ←	putative endonuclease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,043,629	0	A	G	100.0%	843.7 / NA	254	I185T (ATT→ACT)	yihG	putative endonuclease
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (109/145); total (109/145)

Only 100 of 265 total aligned reads displayed.

GCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAATGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAA  >  NC_000913/4043539‑4043718

gccgccTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGtg                                                                                         >  2:2296123/1‑93 (MQ=255)

gccgccTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGtg                                                                                         <  2:5326738/93‑1 (MQ=255)

  cgccTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGtggt                                                                                       <  1:4801838/93‑1 (MQ=255)

   gccTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAgtggtg                                                                                      <  1:5269739/93‑1 (MQ=255)

   gccTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAgtggtg                                                                                      >  2:3912374/1‑93 (MQ=255)

    ccTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGtggtgg                                                                                     >  2:1837355/1‑93 (MQ=255)

     cTTGGGTGGCAACAAGTTTTGAAAAGTGGAGTGGATTTGCTGATGTTTTTCTGGCGTGAAACGGGAGCCTTCAACGAAATTGACAGtggtggt                                                                                    <  1:3855697/93‑1 (MQ=255)

      tttGGTGGCAACAAGTTTTGAAAACTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAgtggtggtg                                                                                   <  1:1673758/93‑1 (MQ=255)

       ttGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGtggtggtgg                                                                                  <  1:2962801/93‑1 (MQ=255)

         ggtggCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGa                                                                                <  1:1464166/93‑1 (MQ=255)

         ggtggCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGa                                                                                <  1:22557/93‑1 (MQ=255)

          gtggCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGag                                                                               >  2:4793856/1‑92 (MQ=255)

          gtggCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGAt                                                                               <  2:2670759/93‑1 (MQ=255)

           tggCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATg                                                                              <  2:2748760/93‑1 (MQ=255)

           tggCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATg                                                                              <  1:3285155/93‑1 (MQ=255)

            ggCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGc                                                                             >  2:2451114/1‑93 (MQ=255)

             gCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCa                                                                            <  2:3768262/93‑1 (MQ=255)

             gCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCa                                                                            <  2:3093689/93‑1 (MQ=255)

              caacaaGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAg                                                                           <  1:2476042/93‑1 (MQ=255)

              caacaaGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAg                                                                           >  2:2114077/1‑93 (MQ=255)

                acaaGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGc                                                                         <  2:5168782/93‑1 (MQ=255)

                 caaGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCg                                                                        >  2:6245262/1‑93 (MQ=255)

                  aaGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGa                                                                       >  1:6365590/1‑93 (MQ=255)

                  aaGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGa                                                                       >  1:872232/1‑93 (MQ=255)

                   aGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGaa                                                                      <  2:1347759/93‑1 (MQ=255)

                    gTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGaaa                                                                     >  2:4622090/1‑93 (MQ=255)

                    gTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGaaa                                                                     >  2:405535/1‑93 (MQ=255)

                    gTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGaaa                                                                     <  1:5939617/93‑1 (MQ=255)

                             agtgnantggGTTTGCTGATGTTTTTCCTGNGTGAACCGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTcaca                                                            <  2:513426/93‑1 (MQ=255)

                              gtggagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACaa                                                           <  2:796367/93‑1 (MQ=255)

                                ggagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGa                                                         >  1:3813332/1‑93 (MQ=255)

                                ggagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGa                                                         >  1:2711683/1‑93 (MQ=255)

                                ggagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGa                                                         >  1:149193/1‑93 (MQ=255)

                                 gagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGaa                                                        <  2:424062/93‑1 (MQ=255)

                                 gagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGaa                                                        <  1:5750869/93‑1 (MQ=255)

                                 gagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGaa                                                        <  2:3548322/93‑1 (MQ=255)

                                      ggTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCg                                                   <  2:2998765/93‑1 (MQ=255)

                                      ggTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCg                                                   >  1:5301271/1‑93 (MQ=255)

                                        tttGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAg                                                 <  1:3370939/93‑1 (MQ=255)

                                         ttGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGt                                                <  2:1268943/93‑1 (MQ=255)

                                         ttGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGt                                                <  2:521440/93‑1 (MQ=255)

                                            cTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGt                                             <  2:2865997/93‑1 (MQ=255)

                                            cTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGt                                             >  2:5414806/1‑93 (MQ=255)

                                             tGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGtt                                            >  1:1288324/1‑93 (MQ=255)

                                             tGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGtt                                            >  2:1210016/1‑93 (MQ=255)

                                              gATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGGGAACCTTTTCACAAGAACGACGAGTGGttt                                           >  1:2115274/1‑93 (MQ=255)

                                              gATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAACCTTTTCACAAGAACGCCGAGTGGttt                                           >  1:2106122/1‑93 (MQ=255)

                                               aTGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTc                                          <  1:4356409/93‑1 (MQ=255)

                                                 gTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCaa                                        <  2:6498060/93‑1 (MQ=255)

                                                  tttttCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAAc                                       <  2:5713141/93‑1 (MQ=255)

                                                  tttttCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGAGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAAc                                       >  1:3488747/1‑93 (MQ=255)

                                                   ttttCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACa                                      >  2:5698463/1‑93 (MQ=255)

                                                   ttttCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACa                                      >  1:991289/1‑93 (MQ=255)

                                                   ttttCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACa                                      <  1:4246115/93‑1 (MQ=255)

                                                    tttCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACAt                                     <  1:5862573/93‑1 (MQ=255)

                                                      tCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCt                                   <  1:6482021/93‑1 (MQ=255)

                                                       cTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCtt                                  <  1:2208965/93‑1 (MQ=255)

                                                        ttGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCttt                                 >  2:6731978/1‑93 (MQ=255)

                                                         tGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTa                                >  2:2588784/1‑93 (MQ=255)

                                                         tGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTa                                <  1:6200589/93‑1 (MQ=255)

                                                          gCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTAc                               <  1:1583292/93‑1 (MQ=255)

                                                          gCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTAc                               >  1:4963433/1‑93 (MQ=255)

                                                           cGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTAcc                              <  2:6576930/93‑1 (MQ=255)

                                                            gTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCCAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCa                             <  1:4122847/93‑1 (MQ=255)

                                                              gAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACg                           >  2:1868286/1‑93 (MQ=255)

                                                              gAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACg                           >  1:4017911/1‑93 (MQ=255)

                                                               aaaCGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGt                          >  2:3774128/1‑93 (MQ=255)

                                                                aaCGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTc                         >  2:1802625/1‑93 (MQ=255)

                                                                aaCGGGAGCCTTCAACGAAATTGACAGTGGTGGCGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTc                         >  1:4479697/1‑93 (MQ=255)

                                                                 aCGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCg                        >  1:2327009/1‑93 (MQ=255)

                                                                  cGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGc                       <  1:3466570/93‑1 (MQ=255)

                                                                   gggAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCt                      >  1:2504534/1‑93 (MQ=255)

                                                                    ggAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTc                     <  1:4499908/93‑1 (MQ=255)

                                                                    ggAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTc                     <  1:6648269/93‑1 (MQ=255)

                                                                     gAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTcc                    >  1:3587400/1‑93 (MQ=255)

                                                                     gAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTcc                    <  1:5540814/93‑1 (MQ=255)

                                                                       gCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCgg                  <  2:3185166/93‑1 (MQ=255)

                                                                       gCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCgg                  >  2:6218548/1‑93 (MQ=255)

                                                                       gCCTTCAACGAAATTGACAGTGGTGGTGGAATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCgg                  <  1:5625666/93‑1 (MQ=255)

                                                                        ccTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGa                 <  2:3464804/93‑1 (MQ=255)

                                                                         cTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGAt                >  2:3308991/1‑93 (MQ=255)

                                                                         cTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGAt                <  1:1840697/93‑1 (MQ=255)

                                                                         cTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGAt                >  2:6066014/1‑93 (MQ=255)

                                                                         cTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGAt                <  2:5648507/93‑1 (MQ=255)

                                                                            cAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGAc             >  2:4500335/1‑93 (MQ=255)

                                                                            cAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGAc             <  2:1781837/93‑1 (MQ=255)

                                                                             aaCGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACg            >  2:5075087/1‑93 (MQ=255)

                                                                              aCGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGt           <  1:5131581/93‑1 (MQ=255)

                                                                                 aaaTTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGtaat        <  2:4318392/93‑1 (MQ=255)

                                                                                 aaaTTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGtaat        <  1:1039567/93‑1 (MQ=255)

                                                                                  aaTTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGtaata       <  1:24078/93‑1 (MQ=255)

                                                                                   aTTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGtaataa      <  2:6403813/93‑1 (MQ=255)

                                                                                    ttGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTaataaa     >  1:5070371/1‑93 (MQ=255)

                                                                                    ttGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTaataaa     >  2:869422/1‑93 (MQ=255)

                                                                                      gACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTaataaata   <  1:1782182/93‑1 (MQ=255)

                                                                                      gACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTaataaata   <  1:6674086/93‑1 (MQ=255)

                                                                                       aCAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAataaataa  >  1:2883176/1‑93 (MQ=255)

                                                                                       aCAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAataaataa  <  2:5012203/93‑1 (MQ=255)

                                                                                       aCAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAataaataa  <  1:3912374/93‑1 (MQ=255)

                                                                                       aCAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAataaataa  <  2:6618632/93‑1 (MQ=255)

GCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAATGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAA  >  NC_000913/4043539‑4043718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCTGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAATGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAGCGC  >  NC_000913/4043536‑4043722

CCTGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAG                                                                                               <  SRR4302536.3741029/94‑1 (MQ=60)

  TGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTG                                                                                             <  SRR4302536.502686/94‑1 (MQ=60)

  TGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTG                                                                                             <  SRR4302536.828209/94‑1 (MQ=60)

   GCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGG                                                                                            >  SRR4302536.188561/1‑94 (MQ=60)

     CGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTG                                                                                          >  SRR4302536.2513907/1‑94 (MQ=60)

     CGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTG                                                                                          <  SRR4302536.6405630/94‑1 (MQ=60)

     CGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTG                                                                                          <  SRR4302536.4946355/94‑1 (MQ=60)

      GCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGG                                                                                         <  SRR4302536.2643968/94‑1 (MQ=60)

      GCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGG                                                                                         <  SRR4302536.5426799/94‑1 (MQ=60)

       CCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACA‑‑‑GTGGTGGG                                                                                     >  SRR4302536.2242535/1‑94 (MQ=60)

       CCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACA‑‑‑GTGGTGGG                                                                                     >  SRR4302536.4909517/1‑94 (MQ=60)

        CTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTG                                                                                       <  SRR4302536.3970454/94‑1 (MQ=60)

        CTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTG                                                                                       >  SRR4302536.1871175/1‑94 (MQ=60)

        CTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTG                                                                                       >  SRR4302536.2310751/1‑94 (MQ=60)

        CTTGGGTGGCAACAAGTTTTGAAAAGTGGAGTGGATTTGCTGATGTTTTTCTGGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTG                                                                                       <  SRR4302536.3970455/94‑1 (MQ=60)

         TTTGGTGGCAACAAGTTTTGAAAACTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGG                                                                                      <  SRR4302536.1722300/94‑1 (MQ=60)

          TTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGG                                                                                     <  SRR4302536.3050072/94‑1 (MQ=60)

          TTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGG                                                                                     >  SRR4302536.440470/1‑94 (MQ=60)

           TGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGA                                                                                    <  SRR4302536.201205/94‑1 (MQ=60)

            GGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGAT                                                                                   <  SRR4302536.23193/94‑1 (MQ=60)

            GGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGAT                                                                                   <  SRR4302536.2696818/94‑1 (MQ=60)

            GGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGAT                                                                                   <  SRR4302536.2177115/94‑1 (MQ=60)

            GGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGAT                                                                                   <  SRR4302536.1507477/94‑1 (MQ=60)

             GTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATG                                                                                  <  SRR4302536.4766977/94‑1 (MQ=60)

              TGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGC                                                                                 <  SRR4302536.3381780/94‑1 (MQ=60)

               GGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCA                                                                                <  SRR4302536.3591698/94‑1 (MQ=60)

                GCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAG                                                                               <  SRR4302536.5780269/94‑1 (MQ=60)

                GCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAG                                                                               >  SRR4302536.165353/1‑94 (MQ=60)

                 CAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGG                                                                              <  SRR4302536.2550781/94‑1 (MQ=60)

                 CAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGG                                                                              >  SRR4302536.4100852/1‑94 (MQ=60)

                 CAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGG                                                                              >  SRR4302536.2028322/1‑94 (MQ=60)

                  AACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGC                                                                             <  SRR4302536.1417458/94‑1 (MQ=60)

                   ACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCG                                                                            <  SRR4302536.947474/94‑1 (MQ=60)

                    CAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGA                                                                           >  SRR4302536.6555270/1‑94 (MQ=60)

                    CAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGA                                                                           >  SRR4302536.897930/1‑94 (MQ=60)

                     AAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAA                                                                          <  SRR4302536.4400752/94‑1 (MQ=60)

                       GTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAAC                                                                        <  SRR4302536.6116569/94‑1 (MQ=60)

                          TTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTT                                                                     <  SRR4302536.6851327/94‑1 (MQ=60)

                              AAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCAC                                                                 >  SRR4302536.1384961/1‑94 (MQ=60)

                              AAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCAC                                                                 >  SRR4302536.376046/1‑94 (MQ=60)

                               AAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACA                                                                >  SRR4302536.3448060/1‑94 (MQ=60)

                               AAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACA                                                                <  SRR4302536.1813988/94‑1 (MQ=60)

                               AAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACA                                                                <  SRR4302536.6832709/94‑1 (MQ=60)

                                 GTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAG                                                              <  SRR4302536.6556821/94‑1 (MQ=60)

                                 GTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAG                                                              <  SRR4302536.3025734/94‑1 (MQ=60)

                                  TGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGA                                                             >  SRR4302536.6860714/1‑94 (MQ=60)

                                  TGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGA                                                             >  SRR4302536.3927000/1‑94 (MQ=60)

                                  TGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGA                                                             >  SRR4302536.153078/1‑94 (MQ=60)

                                  TGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGA                                                             >  SRR4302536.2792572/1‑94 (MQ=60)

                                   GGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAA                                                            <  SRR4302536.5296114/94‑1 (MQ=60)

                                    GAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAAC                                                           <  SRR4302536.3817465/94‑1 (MQ=60)

                                    GAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAAC                                                           <  SRR4302536.970167/94‑1 (MQ=60)

                                    GAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAAC                                                           <  SRR4302536.2556104/94‑1 (MQ=60)

                                    GAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAAC                                                           <  SRR4302536.5921927/94‑1 (MQ=60)

                                     AGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACG                                                          <  SRR4302536.496138/94‑1 (MQ=60)

                                     AGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACG                                                          <  SRR4302536.155181/94‑1 (MQ=60)

                                      GTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGC                                                         <  SRR4302536.1181601/94‑1 (MQ=60)

                                       TGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCC                                                        >  SRR4302536.54319/1‑94 (MQ=60)

                                       TGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCC                                                        >  SRR4302536.5627354/1‑94 (MQ=60)

                                        GGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCG                                                       <  SRR4302536.4491816/94‑1 (MQ=60)

                                        GGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCG                                                       >  SRR4302536.5459389/1‑94 (MQ=60)

                                         GGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGA                                                      <  SRR4302536.4628560/94‑1 (MQ=60)

                                         GGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGA                                                      >  SRR4302536.4035219/1‑94 (MQ=60)

                                           TTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGT                                                    <  SRR4302536.3471086/94‑1 (MQ=60)

                                           TTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGG                                                    >  SRR4302536.1657096/1‑94 (MQ=60)

                                            TTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGTAACTTTTCACAAGAACGCCGAGTG                                                   >  SRR4302536.6214593/1‑94 (MQ=60)

                                            TTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTG                                                   <  SRR4302536.3970787/94‑1 (MQ=60)

                                            TTGCTGATCTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTG                                                   <  SRR4302536.2313230/94‑1 (MQ=60)

                                             TGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGG                                                  <  SRR4302536.4248848/94‑1 (MQ=60)

                                               CTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTT                                                <  SRR4302536.5983114/94‑1 (MQ=60)

                                               CTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTT                                                >  SRR4302536.6422697/1‑94 (MQ=60)

                                               CTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTT                                                >  SRR4302536.1326866/1‑94 (MQ=60)

                                               CTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTT                                                <  SRR4302536.2422155/94‑1 (MQ=60)

                                                TGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGGGAACCTTTTCACAAGAACGACGAGTGGTTT                                               >  SRR4302536.2178835/1‑94 (MQ=60)

                                                TGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAACCTTTTCACAAGAACGCCGAGTGGTTT                                               >  SRR4302536.2169422/1‑94 (MQ=60)

                                                TGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTT                                               >  SRR4302536.5859949/1‑94 (MQ=60)

                                                  ATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCA                                             <  SRR4302536.4486695/94‑1 (MQ=60)

                                                    GTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGAGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAAC                                           >  SRR4302536.3592807/1‑94 (MQ=60)

                                                     TTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACA                                          >  SRR4302536.1020520/1‑94 (MQ=60)

                                                      TTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACAT                                         <  SRR4302536.2515354/94‑1 (MQ=60)

                                                      TTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACAT                                         <  SRR4302536.4372578/94‑1 (MQ=60)

                                                       TTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATC                                        <  SRR4302536.6037225/94‑1 (MQ=60)

                                                         TCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTT                                      <  SRR4302536.2842547/94‑1 (MQ=60)

                                                         TCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTT                                      <  SRR4302536.5254118/94‑1 (MQ=60)

                                                         TCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTT                                      <  SRR4302536.6675361/94‑1 (MQ=60)

                                                          CTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTT                                     >  SRR4302536.4238243/1‑94 (MQ=60)

                                                          CTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTT                                     <  SRR4302536.6120516/94‑1 (MQ=60)

                                                          CTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTT                                     <  SRR4302536.2275667/94‑1 (MQ=60)

                                                            TGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTAC                                   <  SRR4302536.3490452/94‑1 (MQ=60)

                                                            TGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTAC                                   <  SRR4302536.6385272/94‑1 (MQ=60)

                                                            TGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTAC                                   >  SRR4302536.5112541/1‑94 (MQ=60)

                                                             GCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACC                                  <  SRR4302536.1629643/94‑1 (MQ=60)

                                                               GTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCCAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCAC                                <  SRR4302536.4245079/94‑1 (MQ=60)

                                                                TGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACG                               >  SRR4302536.4137131/1‑94 (MQ=60)

                                                                 GAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGT                              >  SRR4302536.5341426/1‑94 (MQ=60)

                                                                  AAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTC                             <  SRR4302536.44780/94‑1 (MQ=60)

                                                                  AAACGGGAGCCTTCAACGAAATTGACAGTGGTGGCGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTC                             >  SRR4302536.4614267/1‑94 (MQ=60)

                                                                   AACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCG                            >  SRR4302536.2397634/1‑94 (MQ=60)

                                                                     CGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCT                          <  SRR4302536.6098011/94‑1 (MQ=60)

                                                                     CGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCT                          <  SRR4302536.2832803/94‑1 (MQ=60)

                                                                     CGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCT                          <  SRR4302536.2256016/94‑1 (MQ=60)

                                                                     CGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCT                          >  SRR4302536.2580056/1‑94 (MQ=60)

                                                                     CGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCT                          <  SRR4302536.3569878/94‑1 (MQ=60)

                                                                     CGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCT                          >  SRR4302536.3441164/1‑94 (MQ=60)

                                                                      GGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTC                         >  SRR4302536.1529384/1‑94 (MQ=60)

                                                                      GGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTC                         >  SRR4302536.3933114/1‑94 (MQ=60)

                                                                      GGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTC                         >  SRR4302536.3588640/1‑94 (MQ=60)

                                                                       GGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCC                        <  SRR4302536.6845922/94‑1 (MQ=60)

                                                                       GGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCC                        >  SRR4302536.4153029/1‑94 (MQ=60)

                                                                       GGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCC                        <  SRR4302536.4634958/94‑1 (MQ=60)

                                                                       GGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCC                        >  SRR4302536.3694703/1‑94 (MQ=60)

                                                                        GAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCG                       <  SRR4302536.6680239/94‑1 (MQ=60)

                                                                        GAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCG                       <  SRR4302536.5705937/94‑1 (MQ=60)

                                                                          GCCTTCAACGAAATTGACAGTGGTGGTGGAATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGA                     <  SRR4302536.5792771/94‑1 (MQ=60)

                                                                           CCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGAT                    >  SRR4302536.232345/1‑94 (MQ=60)

                                                                           CCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGAT                    >  SRR4302536.5257310/1‑94 (MQ=60)

                                                                            CTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATG                   <  SRR4302536.1896191/94‑1 (MQ=60)

                                                                            CTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATG                   <  SRR4302536.5988516/94‑1 (MQ=60)

                                                                            CTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATG                   >  SRR4302536.3218310/1‑94 (MQ=60)

                                                                             TTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGA                  <  SRR4302536.1573303/94‑1 (MQ=60)

                                                                             TTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGA                  <  SRR4302536.5068038/94‑1 (MQ=60)

                                                                              TCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGAC                 >  SRR4302536.872919/1‑94 (MQ=60)

                                                                               CAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACG                <  SRR4302536.5195555/94‑1 (MQ=60)

                                                                                 ACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTA              <  SRR4302536.5284839/94‑1 (MQ=60)

                                                                                 ACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTA              >  SRR4302536.3329410/1‑94 (MQ=60)

                                                                                  CGAAATTGAGAGTGGTGGTGGCATGCAGGCGAATCTTCTGACAAGAACGCCGAGTGGTTTCAACATCTTTCCCACATCGCTCCGGATGACGTAA             <  SRR4302536.3659682/94‑1 (MQ=60)

                                                                                    AAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATA           <  SRR4302536.1070436/94‑1 (MQ=60)

                                                                                     AATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAA          <  SRR4302536.24748/94‑1 (MQ=60)

                                                                                      ATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAA         <  SRR4302536.2460609/94‑1 (MQ=60)

                                                                                      ATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAA         >  SRR4302536.5222183/1‑94 (MQ=60)

                                                                                         GACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAA      <  SRR4302536.1836045/94‑1 (MQ=60)

                                                                                         GACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAA      <  SRR4302536.6872391/94‑1 (MQ=60)

                                                                                         GACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAA      >  SRR4302536.2968255/1‑94 (MQ=60)

                                                                                          ANANNGNTNGNNNGNNGCAGGCGNANCTTTNCACAAGAACGCCGAGTGGTTTCAACATCTTTAnnnnnnnnnnnnggatgacnnnnnnannnan     >  SRR4302536.5494679/1‑63 (MQ=52)

                                                                                          ACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTACTAAATAAG     <  SRR4302536.5563047/94‑1 (MQ=60)

                                                                                          ACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAG     <  SRR4302536.5772504/94‑1 (MQ=60)

                                                                                          ACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAG     <  SRR4302536.4028671/94‑1 (MQ=60)

                                                                                           CAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAGC    <  SRR4302536.671393/94‑1 (MQ=60)

                                                                                            AGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAGCG   <  SRR4302536.1908844/94‑1 (MQ=60)

                                                                                            AGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAGCG   >  SRR4302536.4611324/1‑94 (MQ=60)

                                                                                            AGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAAGAAATAAGCG   <  SRR4302536.6738619/94‑1 (MQ=60)

                                                                                             GTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAGCGC  <  SRR4302536.1230227/94‑1 (MQ=60)

CCTGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAATGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAGCGC  >  NC_000913/4043536‑4043722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`