Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1475 |
266.7 |
13469680 |
98.2% |
13227225 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,057,759 |
+C |
coding (1773/1776 nt) |
yihK → |
putative GTP‑binding factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,057,758 | 1 | . | C | 98.9%
| 867.9
/ 1.1
| 264 | coding (1772/1776 nt) | yihK | putative GTP‑binding factor |
| Reads supporting (aligned to +/- strand): ref base . (0/3); new base C (143/118); total (143/121) |
| Fisher's exact test for biased strand distribution p-value = 9.50e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 287 total aligned reads displayed.
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑A‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG > NC_000913/4057666‑4057845
|
tATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑a > 1:2750608/1‑93 (MQ=255)
aTCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑A‑c > 2:4630567/1‑93 (MQ=255)
aTCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑A‑c < 2:4904833/93‑1 (MQ=255)
ccGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑A‑cct > 1:586474/1‑91 (MQ=255)
cGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑A‑cctg < 2:535982/93‑4 (MQ=255)
gCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑A‑cctga < 1:2392061/93‑5 (MQ=255)
aTGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACg > 1:6375170/1‑93 (MQ=255)
tGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACgg > 1:4163260/1‑93 (MQ=255)
tGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGCAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACgg > 1:501351/1‑93 (MQ=255)
aCTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGaa < 1:4840423/93‑1 (MQ=255)
tGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACg > 1:1041194/1‑93 (MQ=255)
ggAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGCCCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGCAAACGa > 1:3029832/1‑93 (MQ=255)
ggAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGa < 2:3276785/93‑1 (MQ=255)
ggAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGa < 2:5648353/93‑1 (MQ=255)
gAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGAt < 2:3061824/93‑1 (MQ=255)
aaCAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGAtc < 1:791433/93‑1 (MQ=255)
aaGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGAtcgtc > 1:1897440/1‑93 (MQ=255)
aaGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGAtcgtc > 1:2132368/1‑93 (MQ=255)
aGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGAtcgtcg > 1:2517234/1‑93 (MQ=255)
aGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGAtcgtcg > 1:6075761/1‑93 (MQ=255)
ctctGGAGTTCATCGATGATGACGAACTGGTAGAAGTGTCTCCGACCTCTATCCGTATTCGTAAACTTC‑ACCTGACGGAAAACGATCGTcgcc < 1:5960896/93‑1 (MQ=255)
tctGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTcgccg < 1:5754832/93‑1 (MQ=255)
ggAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCgcgc > 1:958798/1‑93 (MQ=255)
gAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGcc > 2:1624660/1‑93 (MQ=255)
gTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCaa > 1:1921331/1‑93 (MQ=255)
ttCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAAc > 2:3995126/1‑93 (MQ=255)
ttCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAAc < 1:3935657/93‑1 (MQ=255)
tCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAAcc < 1:5610074/93‑1 (MQ=255)
tCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAAcc > 1:1410779/1‑93 (MQ=255)
cATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACcg < 2:5896246/93‑1 (MQ=255)
cATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACcg > 2:253945/1‑93 (MQ=255)
cGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGGAAACGGC‑ACCTGACGGAAAACGATCGGCGACGCGCCGACGgcgc > 1:4477315/1‑93 (MQ=255)
gatgatGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCa < 1:6324338/93‑1 (MQ=255)
atgatgACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAc > 2:4808100/1‑93 (MQ=255)
tgatgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAcc > 1:2257785/1‑93 (MQ=255)
gatgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCg > 1:6484667/1‑93 (MQ=255)
atgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGa < 2:4841715/93‑1 (MQ=255)
atgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGa > 1:3376978/1‑93 (MQ=255)
tgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGaa < 2:6399524/93‑1 (MQ=255)
tgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGaa > 1:3310819/1‑93 (MQ=255)
gAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAc > 1:506693/1‑93 (MQ=255)
gAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAc < 2:1105039/93‑1 (MQ=255)
gAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAc < 2:3124883/93‑1 (MQ=255)
aaCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACg > 1:5208884/1‑93 (MQ=255)
cTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAt < 1:2885299/93‑1 (MQ=255)
cTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAt > 1:6176118/1‑93 (MQ=255)
tGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAtt > 1:5540391/1‑93 (MQ=255)
tGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAtt > 2:5503857/1‑93 (MQ=255)
gTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCTC‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTaa < 2:4073298/93‑1 (MQ=255)
gTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTaa < 2:4200136/93‑1 (MQ=255)
tAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAt < 1:4226056/93‑1 (MQ=255)
aGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAtt > 2:6700918/1‑93 (MQ=255)
gAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTCAttt > 2:2201418/1‑93 (MQ=255)
gAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAttt < 2:5568256/93‑1 (MQ=255)
gAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAttt > 2:3500020/1‑93 (MQ=255)
aaGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTc > 2:6044095/1‑93 (MQ=255)
aGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAttttg < 2:3779740/93‑3 (MQ=255)
aGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCg > 2:1507555/1‑93 (MQ=255)
tGACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtt < 1:3873323/93‑1 (MQ=255)
gACTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGttt < 2:1054399/93‑1 (MQ=255)
aCTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtttt > 1:3629558/1‑93 (MQ=255)
cTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGttttt > 1:265318/1‑93 (MQ=255)
cTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGttttt < 1:1777951/93‑1 (MQ=255)
cTCCGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGttttt > 1:2344829/1‑93 (MQ=255)
ccGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTa < 2:622366/93‑1 (MQ=255)
ccGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTa < 1:3491587/93‑1 (MQ=255)
ccGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGAACGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTa < 1:5442330/93‑1 (MQ=255)
cGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAg > 2:1822682/1‑93 (MQ=255)
cGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAg < 2:1723976/93‑1 (MQ=255)
cGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAg < 2:2432994/93‑1 (MQ=255)
cGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAg > 2:4038137/1‑93 (MQ=255)
cGACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAg > 1:2806656/1‑93 (MQ=255)
gACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGt > 1:1115338/1‑93 (MQ=255)
gACCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGt > 1:6680487/1‑93 (MQ=255)
aCCTCTATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTc > 2:5167945/1‑93 (MQ=255)
ctctATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCAt > 1:672163/1‑93 (MQ=255)
ctATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaa < 1:3099174/93‑1 (MQ=255)
tATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaa < 2:709873/93‑1 (MQ=255)
tATCCGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaa > 2:4375603/1‑93 (MQ=255)
cGTATTCGTAAACGTCTC‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAc < 1:4605989/93‑1 (MQ=255)
cGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAc < 2:907138/93‑1 (MQ=255)
cGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAc > 2:852427/1‑93 (MQ=255)
cGTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAc < 2:2598795/93‑1 (MQ=255)
gTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAcc < 2:2970422/93‑1 (MQ=255)
gTATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAcc < 1:1683197/93‑1 (MQ=255)
tATTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCt > 1:1519005/1‑93 (MQ=255)
aTTCGTAAACGTCGC‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTg < 2:3594225/93‑1 (MQ=255)
aTTCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTg < 2:4476359/93‑1 (MQ=255)
ttCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGc > 1:6567519/1‑93 (MQ=255)
ttCGTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGc > 1:4662119/1‑93 (MQ=255)
cGTAAACGTC‑ACCTGACGAAAAACGATCGTCGTCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCa < 1:1294600/93‑1 (MQ=255)
gTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAg < 2:4249503/93‑1 (MQ=255)
gTAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAg > 2:262776/1‑93 (MQ=255)
tAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGc > 2:1354256/1‑93 (MQ=255)
tAAACGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGc > 2:1962798/1‑93 (MQ=255)
aaaCGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGGTTTTTAGTCATAAAAAACCTGCCAGCg > 1:3617434/1‑93 (MQ=255)
aaCGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGa > 1:6243320/1‑93 (MQ=255)
aaCGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGa < 1:2442176/93‑1 (MQ=255)
aaCGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGa < 2:2006741/93‑1 (MQ=255)
cGTC‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATg > 2:2902120/1‑93 (MQ=255)
|
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTC‑A‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG > NC_000913/4057666‑4057845
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑A‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > NC_000913/4057666‑4057852
|
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑A‑C > SRR4302536.2572199/1‑94 (MQ=60)
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑A‑C > SRR4302536.597232/1‑94 (MQ=60)
TCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑A‑Cct > SRR4302536.601574/1‑92 (MQ=60)
CCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑A‑Cctg > SRR4302536.409742/1‑91 (MQ=60)
GCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGAC < SRR4302536.2464478/94‑1 (MQ=60)
CATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACG > SRR4302536.4911043/1‑94 (MQ=60)
CATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACG > SRR4302536.6565167/1‑94 (MQ=60)
ATGACTCTGGAGCAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGG < SRR4302536.6885934/94‑1 (MQ=60)
ATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGG > SRR4302536.4286934/1‑94 (MQ=60)
ATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGCAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGG > SRR4302536.514256/1‑94 (MQ=60)
GACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAA < SRR4302536.2375981/94‑1 (MQ=60)
ACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAA < SRR4302536.4986101/94‑1 (MQ=60)
TCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAAC < SRR4302536.6897292/94‑1 (MQ=60)
CTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACG > SRR4302536.1072140/1‑94 (MQ=60)
TGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGCCCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGCAAACGA > SRR4302536.3118861/1‑94 (MQ=60)
TGGAACAAGCTCTGCAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGGAAACGA < SRR4302536.4347526/94‑1 (MQ=60)
GGAACAAGCTCTGGAGTTCATCGATGATGACGATCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGAT < SRR4302536.2686373/94‑1 (MQ=60)
GGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGAT > SRR4302536.3118980/1‑94 (MQ=60)
GAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATC > SRR4302536.6294666/1‑94 (MQ=60)
GAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATC < SRR4302536.5081769/94‑1 (MQ=60)
AACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCG < SRR4302536.6023237/94‑1 (MQ=60)
AACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCG < SRR4302536.1667202/94‑1 (MQ=60)
AACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCG < SRR4302536.2417143/94‑1 (MQ=60)
AACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCG < SRR4302536.814625/94‑1 (MQ=60)
AACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCG > SRR4302536.107038/1‑94 (MQ=60)
CAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTC > SRR4302536.3408908/1‑94 (MQ=60)
CAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTC > SRR4302536.1954579/1‑94 (MQ=60)
CAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTC > SRR4302536.2196376/1‑94 (MQ=60)
CAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTC > SRR4302536.5773082/1‑94 (MQ=60)
CAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTC > SRR4302536.668656/1‑94 (MQ=60)
AAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCG > SRR4302536.2593131/1‑94 (MQ=60)
AAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCG > SRR4302536.1853764/1‑94 (MQ=60)
AAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCG > SRR4302536.3578927/1‑94 (MQ=60)
AAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCG > SRR4302536.6257002/1‑94 (MQ=60)
AAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCG > SRR4302536.6297977/1‑94 (MQ=60)
AAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCG < SRR4302536.6577165/94‑1 (MQ=60)
AGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGC > SRR4302536.1395005/1‑94 (MQ=60)
GCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCC < SRR4302536.5173813/94‑1 (MQ=60)
CTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGTCTCCGACCTCTATCCGTATTCGTAAACTT‑C‑ACCTGACGGAAAACGATCGTCGCCG < SRR4302536.6138552/94‑1 (MQ=60)
CTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGCTCGTCGGCG > SRR4302536.2422119/1‑94 (MQ=60)
TCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGC > SRR4302536.2678252/1‑94 (MQ=60)
TCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGC < SRR4302536.5926003/94‑1 (MQ=60)
CTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCG > SRR4302536.1959378/1‑94 (MQ=60)
TGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGC > SRR4302536.987141/1‑94 (MQ=60)
GAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCA > SRR4302536.1012360/1‑94 (MQ=60)
AGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAA > SRR4302536.1979133/1‑94 (MQ=60)
AGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAA > SRR4302536.6828231/1‑94 (MQ=60)
AGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAA < SRR4302536.2261168/94‑1 (MQ=60)
GTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAAC > SRR4302536.4006535/1‑94 (MQ=60)
GTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAAC < SRR4302536.6632961/94‑1 (MQ=60)
ttgatcattgatgccgagctgatgGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACC < SRR4302536.5981673/70‑1 (MQ=60)
TTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACC < SRR4302536.6111763/94‑1 (MQ=60)
TTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACC < SRR4302536.4052576/94‑1 (MQ=60)
TTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACC > SRR4302536.1452739/1‑94 (MQ=60)
TCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCG < SRR4302536.5776749/94‑1 (MQ=60)
TCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCG > SRR4302536.1372616/1‑94 (MQ=60)
ATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCG > SRR4302536.1814162/1‑94 (MQ=60)
TCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGGAAACGG‑C‑ACCTGACGGAAAACGATCGGCGACGCGCCGACGGCGC > SRR4302536.4611813/1‑94 (MQ=60)
GATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAC < SRR4302536.6512712/94‑1 (MQ=60)
ATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACC > SRR4302536.3857175/1‑94 (MQ=60)
ATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACC > SRR4302536.2326135/1‑94 (MQ=60)
TGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCG < SRR4302536.3751528/94‑1 (MQ=60)
TGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCG > SRR4302536.4105038/1‑94 (MQ=60)
TGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCG > SRR4302536.6678063/1‑94 (MQ=60)
TGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCA < SRR4302536.3239116/94‑1 (MQ=60)
GATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGA > SRR4302536.3477317/1‑94 (MQ=60)
ATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGACAACGATCGTCGCCGCGCCAACCGCGCACCGAA > SRR4302536.4924017/1‑94 (MQ=60)
ATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAA > SRR4302536.3408629/1‑94 (MQ=60)
TGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAA > SRR4302536.978155/1‑94 (MQ=60)
TGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAA > SRR4302536.5496489/1‑94 (MQ=60)
cactAACTGTTAGAAGTGACTCCCCCCTCTATCCGTATTCGTAAACCT‑C‑ACCTGACGGAAAACGATCGTCCCCGCGCCAACCGCGCACCGAAAG < SRR4302536.3540025/90‑1 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAG < SRR4302536.4622729/94‑1 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAG < SRR4302536.2014524/94‑1 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAG < SRR4302536.2937932/94‑1 (MQ=60)
CGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAC > SRR4302536.519699/1‑94 (MQ=60)
GAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACG < SRR4302536.4475009/94‑1 (MQ=60)
GAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACG > SRR4302536.5364142/1‑94 (MQ=60)
GAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACG > SRR4302536.6419583/1‑94 (MQ=60)
AACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGA < SRR4302536.6384959/94‑1 (MQ=60)
ACTGGTAGAAGTGCCTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAT < SRR4302536.4514693/94‑1 (MQ=60)
ACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAT > SRR4302536.6360071/1‑94 (MQ=60)
CTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT < SRR4302536.2970424/94‑1 (MQ=60)
CTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT > SRR4302536.5705499/1‑94 (MQ=60)
TAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATT > SRR4302536.3731363/1‑94 (MQ=60)
TAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATT < SRR4302536.4351807/94‑1 (MQ=60)
AGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTT < SRR4302536.4797289/94‑1 (MQ=60)
AGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTT < SRR4302536.1737447/94‑1 (MQ=60)
GAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTC < SRR4302536.802746/94‑1 (MQ=60)
AAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCG < SRR4302536.5294511/94‑1 (MQ=60)
AGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGT > SRR4302536.247633/1‑94 (MQ=60)
AGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGT < SRR4302536.2961084/94‑1 (MQ=60)
AGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGT > SRR4302536.2385177/1‑94 (MQ=60)
GTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTT < SRR4302536.562581/94‑1 (MQ=60)
TGCCTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTT < SRR4302536.1215939/94‑1 (MQ=60)
TGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTT < SRR4302536.5613187/94‑1 (MQ=60)
TGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTT < SRR4302536.3988516/94‑1 (MQ=60)
TGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACAGCGCACCGAAAGACGATTAATTTCGTTT > SRR4302536.674080/1‑94 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGGAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT > SRR4302536.6545878/1‑94 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT > SRR4302536.4010098/1‑94 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT > SRR4302536.6198961/1‑94 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT > SRR4302536.3738113/1‑94 (MQ=60)
ACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTT > SRR4302536.6120956/1‑94 (MQ=60)
ACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTT > SRR4302536.272402/1‑94 (MQ=60)
ACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTT > SRR4302536.2415941/1‑94 (MQ=60)
CTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTT < SRR4302536.1831728/94‑1 (MQ=60)
CTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTT < SRR4302536.2508251/94‑1 (MQ=60)
CTCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTT < SRR4302536.1608116/94‑1 (MQ=60)
TCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTA > SRR4302536.2124959/1‑94 (MQ=60)
CCCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTA < SRR4302536.4786269/94‑1 (MQ=60)
CCGCCCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGATTTTTAG < SRR4302536.5794069/94‑1 (MQ=60)
CCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAG > SRR4302536.2889882/1‑94 (MQ=60)
CCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAG < SRR4302536.3595740/94‑1 (MQ=60)
CCGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGAACGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAG < SRR4302536.5605118/94‑1 (MQ=60)
CGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGT > SRR4302536.6847404/1‑94 (MQ=60)
CGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGT > SRR4302536.6878933/1‑94 (MQ=60)
CGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGT > SRR4302536.1148814/1‑94 (MQ=60)
CGACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGT > SRR4302536.718004/1‑94 (MQ=60)
CCCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCA < SRR4302536.5293255/94‑1 (MQ=60)
ACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCA > SRR4302536.1529247/1‑94 (MQ=60)
ACCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCA < SRR4302536.5520389/94‑1 (MQ=60)
CCTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCAT > SRR4302536.691849/1‑94 (MQ=60)
CTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATA > SRR4302536.5879286/1‑94 (MQ=60)
CTCTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATA < SRR4302536.6476094/94‑1 (MQ=60)
CTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA > SRR4302536.304555/1‑94 (MQ=60)
CTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA < SRR4302536.3189672/94‑1 (MQ=60)
CTATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA > SRR4302536.6502169/1‑94 (MQ=60)
TATCCGTATTCGTAAACGTCC‑C‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAA < SRR4302536.5186799/94‑1 (MQ=60)
ATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAA < SRR4302536.3142743/94‑1 (MQ=60)
ATCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAA > SRR4302536.3193246/1‑94 (MQ=60)
TCCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAA > SRR4302536.3627919/1‑94 (MQ=60)
CCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAC < SRR4302536.3545867/94‑1 (MQ=60)
CCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAC > SRR4302536.430707/1‑94 (MQ=60)
CCGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAC > SRR4302536.2264424/1‑94 (MQ=60)
CGTATTCGTAAACGT‑CTC‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACC < SRR4302536.4744328/94‑1 (MQ=60)
CGTATTCGTAAACGT‑C‑ACCTGACGGAAAACGCTCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACC > SRR4302536.984605/1‑94 (MQ=60)
GTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT > SRR4302536.1563718/1‑94 (MQ=60)
GTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT > SRR4302536.1832271/1‑94 (MQ=60)
GTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT < SRR4302536.5075174/94‑1 (MQ=60)
GTATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT < SRR4302536.1731967/94‑1 (MQ=60)
TATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTG < SRR4302536.2746858/94‑1 (MQ=60)
ATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGC > SRR4302536.1469071/1‑94 (MQ=60)
ATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGC > SRR4302536.4802303/1‑94 (MQ=60)
ATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGC > SRR4302536.3418095/1‑94 (MQ=60)
ATTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGC > SRR4302536.6762979/1‑94 (MQ=60)
TTCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCC > SRR4302536.1283380/1‑94 (MQ=60)
TCGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCA < SRR4302536.2840291/94‑1 (MQ=60)
CGTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAG > SRR4302536.2835556/1‑94 (MQ=60)
CGTAAACGT‑C‑ACCTGACGAAAAACGATCGTCGTCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAG < SRR4302536.1333304/94‑1 (MQ=60)
GTAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGC > SRR4302536.2568183/1‑94 (MQ=60)
TAAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGGTTTTTAGTCATAAAAAACCTGCCAGCG > SRR4302536.3725580/1‑94 (MQ=60)
AAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGA > SRR4302536.6429311/1‑94 (MQ=60)
AAACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGA > SRR4302536.3734433/1‑94 (MQ=60)
AACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGAT < SRR4302536.2515978/94‑1 (MQ=60)
AACGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGAT > SRR4302536.3092351/1‑94 (MQ=60)
CGT‑C‑ACCTGCCGGAAACCGATCGTCGCCGCGCCATCCGCGCACCAAAGGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGG < SRR4302536.614370/94‑1 (MQ=60)
CGT‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGG > SRR4302536.3756541/1‑94 (MQ=60)
T‑C‑ACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCA < SRR4302536.3237287/94‑1 (MQ=60)
C‑C‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG < SRR4302536.6494944/94‑1 (MQ=60)
cacCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAG > SRR4302536.5298485/4‑94 (MQ=60)
C‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGT < SRR4302536.158422/94‑1 (MQ=60)
CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT < SRR4302536.3068651/94‑1 (MQ=60)
CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > SRR4302536.3145535/1‑94 (MQ=60)
CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT < SRR4302536.5981212/94‑1 (MQ=60)
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TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑C‑A‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > NC_000913/4057666‑4057852
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
