Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,059,790	T→C	intergenic (+66/‑36)	yihM → / → yihN	hypothetical protein/putative resistance protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,059,790	0	T	C	100.0%	1053.8 / NA	316	intergenic (+66/‑36)	yihM/yihN	hypothetical protein/putative resistance protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (161/155); total (161/155)

Only 100 of 317 total aligned reads displayed.

GGCAAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCGGT  >  NC_000913/4059700‑4059879

 gCAAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCaaa                                                                                        <  1:1911778/93‑1 (MQ=255)

  cAAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCaaaa                                                                                       <  2:4966243/93‑1 (MQ=255)

   aaaCCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAAc                                                                                      >  2:6613000/1‑93 (MQ=255)

    aaCCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACa                                                                                     >  2:233104/1‑93 (MQ=255)

    aaCCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACa                                                                                     >  1:6073952/1‑93 (MQ=255)

      ccATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGt                                                                                   <  1:2987094/93‑1 (MQ=255)

        aTCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGa                                                                                 <  1:1068131/93‑1 (MQ=255)

        aTCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGa                                                                                 >  1:1031913/1‑93 (MQ=255)

        aTCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGa                                                                                 >  1:4401080/1‑93 (MQ=255)

         tcttctGAACCACTAATAAGTTTTAACTCATACGCAGTTAATTAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGAt                                                                                >  2:860571/1‑93 (MQ=255)

         tcttctGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGAt                                                                                >  2:4442715/1‑93 (MQ=255)

         tcttctGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGAt                                                                                <  1:3226918/93‑1 (MQ=255)

          cttctGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGAtt                                                                               <  1:6023195/93‑1 (MQ=255)

           ttctGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGAttt                                                                              >  2:2228438/1‑93 (MQ=255)

           ttctGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGAttt                                                                              <  2:2840584/93‑1 (MQ=255)

           ttctGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGAttt                                                                              >  2:2460665/1‑93 (MQ=255)

           ttctGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGAttt                                                                              >  2:2730636/1‑93 (MQ=255)

             ctGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTa                                                                            <  2:42714/93‑1 (MQ=255)

             ctGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTa                                                                            <  1:4466806/93‑1 (MQ=255)

                 aCCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTaaaaa                                                                        >  2:5377525/1‑93 (MQ=255)

                  ccACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAAt                                                                       >  1:5479890/1‑93 (MQ=255)

                  ccACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAAt                                                                       <  2:5931676/93‑1 (MQ=255)

                     cTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGc                                                                    <  1:2044901/93‑1 (MQ=255)

                     cTAATAAGGTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGc                                                                    >  1:6559875/1‑93 (MQ=255)

                      taataaGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCt                                                                   >  2:5548657/1‑93 (MQ=255)

                      taataaGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCt                                                                   >  1:3602442/1‑93 (MQ=255)

                       aataaGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCtt                                                                  <  1:2594186/93‑1 (MQ=255)

                        ataaGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTa                                                                 >  1:4124623/1‑93 (MQ=255)

                        ataaGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTa                                                                 >  1:750091/1‑93 (MQ=255)

                        ataaGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTa                                                                 >  1:2424474/1‑93 (MQ=255)

                         taaGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAg                                                                >  1:3488644/1‑93 (MQ=255)

                          aaGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAgg                                                               >  1:249755/1‑93 (MQ=255)

                            gTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAgggg                                                             <  2:4099810/93‑1 (MQ=255)

                            gTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAgggg                                                             <  2:3053525/93‑1 (MQ=255)

                             ttttAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGa                                                            <  1:6298381/93‑1 (MQ=255)

                             ttttAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGa                                                            <  2:602361/93‑1 (MQ=255)

                             ttttAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGa                                                            >  1:4033566/1‑93 (MQ=255)

                              tttAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGAt                                                           <  2:6220331/93‑1 (MQ=255)

                              tttAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGAt                                                           >  1:6130876/1‑93 (MQ=255)

                                tAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGt                                                         <  2:1520315/93‑1 (MQ=255)

                                tAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGt                                                         <  2:6292734/93‑1 (MQ=255)

                                 aaCTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGtt                                                        <  2:2527800/93‑1 (MQ=255)

                                 aaCTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGtt                                                        >  1:2719162/1‑93 (MQ=255)

                                 aaCTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTT‑AAAATCGCTTAGGGGATGTTa                                                       >  1:3257043/1‑93 (MQ=255)

                                 aaCTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGATATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGtt                                                        >  2:3558368/1‑93 (MQ=255)

                                   cTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTAt                                                      >  1:1179460/1‑93 (MQ=255)

                                    tCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATg                                                     >  1:5908019/1‑93 (MQ=255)

                                    tCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATg                                                     >  1:1363264/1‑93 (MQ=255)

                                    tCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATg                                                     <  2:2301393/93‑1 (MQ=255)

                                    tCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATg                                                     >  1:867007/1‑93 (MQ=255)

                                    tCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATg                                                     >  1:662101/1‑93 (MQ=255)

                                     cATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGc                                                    >  1:948125/1‑93 (MQ=255)

                                     cATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGc                                                    >  1:2680178/1‑93 (MQ=255)

                                      aTACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCt                                                   >  2:2249056/1‑93 (MQ=255)

                                       tACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTc                                                  >  2:6384584/1‑93 (MQ=255)

                                        aCGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCa                                                 <  2:5255189/93‑1 (MQ=255)

                                        aCGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCa                                                 >  1:1538450/1‑93 (MQ=255)

                                         cGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCAc                                                <  2:5000129/93‑1 (MQ=255)

                                          gCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACg                                               >  2:3799980/1‑93 (MQ=255)

                                            aGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGaa                                             >  1:6449940/1‑93 (MQ=255)

                                               taataaAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGaaaaa                                          <  1:3660325/93‑1 (MQ=255)

                                                aataaAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAg                                         <  1:2893538/93‑1 (MQ=255)

                                                   aaaaCCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGaaa                                      >  1:3345441/1‑93 (MQ=255)

                                                    aaaCCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAAt                                     >  2:6084550/1‑93 (MQ=255)

                                                     aaCCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATg                                    <  2:4219706/93‑1 (MQ=255)

                                                      aCCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATgg                                   >  1:481163/1‑93 (MQ=255)

                                                      aCCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATgg                                   >  2:3929926/1‑93 (MQ=255)

                                                       ccATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATggg                                  >  2:6515555/1‑93 (MQ=255)

                                                        cATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGc                                 <  2:4846764/93‑1 (MQ=255)

                                                        cATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGc                                 <  2:4168680/93‑1 (MQ=255)

                                                          ttCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGt                               <  2:1952943/93‑1 (MQ=255)

                                                          ttCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGt                               >  1:3933648/1‑93 (MQ=255)

                                                           tCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGtt                              <  2:4115320/93‑1 (MQ=255)

                                                            ccATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTa                             <  2:3697578/93‑1 (MQ=255)

                                                             cATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTAt                            >  1:432410/1‑93 (MQ=255)

                                                               tatGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTAttt                          <  2:122913/93‑1 (MQ=255)

                                                               tatGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTAttt                          >  1:5171951/1‑93 (MQ=255)

                                                                atGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTa                         <  1:4959797/93‑1 (MQ=255)

                                                                 tGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAg                        <  2:4804683/93‑1 (MQ=255)

                                                                 tGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAg                        >  1:5539093/1‑93 (MQ=255)

                                                                  gAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGAGCGTTATTTAGt                       >  1:4222071/1‑93 (MQ=255)

                                                                    aTGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCt                     <  1:5361067/93‑1 (MQ=255)

                                                                     tGGTCGGTATCTTCTTGCCTTCAAAACAGCGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGACATCGGCGTTATTTAGTCTa                    >  1:1306292/1‑93 (MQ=255)

                                                                     tGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTa                    >  2:3103582/1‑93 (MQ=255)

                                                                     tGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTa                    <  2:5469818/93‑1 (MQ=255)

                                                                     tGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTa                    >  1:3052534/1‑93 (MQ=255)

                                                                      ggTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTAt                   <  2:6249695/93‑1 (MQ=255)

                                                                      ggTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTAt                   <  2:1761029/93‑1 (MQ=255)

                                                                       gTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTAtt                  >  1:2621101/1‑93 (MQ=255)

                                                                         cGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTaa                <  2:6678626/93‑1 (MQ=255)

                                                                          ggTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAac               >  2:566393/1‑93 (MQ=255)

                                                                           gTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAaca              >  2:552659/1‑93 (MQ=255)

                                                                             aTCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACt            >  1:3279111/1‑93 (MQ=255)

                                                                              tCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACtg           <  1:2315406/93‑1 (MQ=255)

                                                                                ttATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACtgtg         <  1:5778804/93‑1 (MQ=255)

                                                                                 tATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAaca              >  1:470834/1‑87 (MQ=255)

                                                                                 tATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAaca              <  2:470834/87‑1 (MQ=255)

                                                                                 tATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACtgtgt        <  2:2981294/93‑1 (MQ=255)

                                                                                    tGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGc     >  2:2090301/1‑93 (MQ=255)

                                                                                     gCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCg    >  1:5656477/1‑93 (MQ=255)

GGCAAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCGGT  >  NC_000913/4059700‑4059879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGAGGCAAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCGGTACAA  >  NC_000913/4059697‑4059883

AGTGGCAAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTC                                                                                               >  SRR4302536.4344477/1‑94 (MQ=60)

AGAGGCAAACCATCTTCTGAACCACTAATAAGTTTTAATTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTC                                                                                               >  SRR4302536.3555846/1‑94 (MQ=60)

AGAGGCAAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTC                                                                                               >  SRR4302536.4517597/1‑94 (MQ=60)

   GGCAAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAA                                                                                            <  SRR4302536.6770602/94‑1 (MQ=60)

    GCAAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAA                                                                                           <  SRR4302536.1969307/94‑1 (MQ=60)

     CAAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAAC                                                                                          <  SRR4302536.339702/94‑1 (MQ=60)

     CAAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAAC                                                                                          >  SRR4302536.312485/1‑94 (MQ=60)

     CAAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAAC                                                                                          >  SRR4302536.946708/1‑94 (MQ=60)

     CAAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAAC                                                                                          <  SRR4302536.4630177/94‑1 (MQ=60)

      AAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACA                                                                                         >  SRR4302536.6255149/1‑94 (MQ=60)

      AAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACA                                                                                         <  SRR4302536.5884091/94‑1 (MQ=60)

        ACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGT                                                                                       <  SRR4302536.2983215/94‑1 (MQ=60)

        ACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGT                                                                                       <  SRR4302536.1884514/94‑1 (MQ=60)

         CCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTG                                                                                      <  SRR4302536.3074994/94‑1 (MQ=60)

         CCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTG                                                                                      >  SRR4302536.4514629/1‑94 (MQ=60)

         CCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTG                                                                                      >  SRR4302536.3367222/1‑94 (MQ=60)

         CCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTG                                                                                      >  SRR4302536.4924867/1‑94 (MQ=60)

         CCATCTTCTGAACCACTAATAAGTTTTAACTCATACGAAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTG                                                                                      <  SRR4302536.697520/94‑1 (MQ=60)

          CATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGA                                                                                     >  SRR4302536.4532652/1‑94 (MQ=60)

          CATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGA                                                                                     >  SRR4302536.2550857/1‑94 (MQ=60)

          CATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGA                                                                                     >  SRR4302536.1062491/1‑94 (MQ=60)

          CATCTGCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGA                                                                                     <  SRR4302536.5448646/94‑1 (MQ=60)

           ATCTTCTGACCCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGAT                                                                                    >  SRR4302536.6731482/1‑94 (MQ=60)

           ATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGAT                                                                                    <  SRR4302536.1100068/94‑1 (MQ=60)

           ATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGAT                                                                                    >  SRR4302536.4282849/1‑94 (MQ=60)

           ATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGAT                                                                                    <  SRR4302536.2698961/94‑1 (MQ=60)

           ATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGAT                                                                                    <  SRR4302536.2608378/94‑1 (MQ=60)

            TCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATT                                                                                   <  SRR4302536.3321511/94‑1 (MQ=60)

             CTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTT                                                                                  <  SRR4302536.6202780/94‑1 (MQ=60)

             CTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTT                                                                                  <  SRR4302536.4060470/94‑1 (MQ=60)

             CTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTT                                                                                  <  SRR4302536.6655628/94‑1 (MQ=60)

             CTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTT                                                                                  >  SRR4302536.1568083/1‑94 (MQ=60)

                CTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAA                                                                               >  SRR4302536.5605505/1‑94 (MQ=60)

                CTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAA                                                                               <  SRR4302536.4600993/94‑1 (MQ=60)

                  GAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAA                                                                             <  SRR4302536.4470544/94‑1 (MQ=60)

                    ACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAAT                                                                           <  SRR4302536.6260014/94‑1 (MQ=60)

                    ACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAAT                                                                           >  SRR4302536.5643526/1‑94 (MQ=60)

                     CCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATC                                                                          >  SRR4302536.3392174/1‑94 (MQ=60)

                      CACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCG                                                                         >  SRR4302536.2773692/1‑94 (MQ=60)

                       ACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGC                                                                        >  SRR4302536.1727991/1‑94 (MQ=60)

                       ACTAATAAGGTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGC                                                                        >  SRR4302536.6755176/1‑94 (MQ=60)

                        CTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCT                                                                       <  SRR4302536.2106468/94‑1 (MQ=60)

                        CTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCT                                                                       >  SRR4302536.4327995/1‑94 (MQ=60)

                        CTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCT                                                                       >  SRR4302536.3710168/1‑94 (MQ=60)

                         TAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTT                                                                      >  SRR4302536.3749597/1‑94 (MQ=60)

                          AATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTA                                                                     <  SRR4302536.2672075/94‑1 (MQ=60)

                          AATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTA                                                                     >  SRR4302536.4246907/1‑94 (MQ=60)

                          AATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTA                                                                     >  SRR4302536.2497768/1‑94 (MQ=60)

                          AATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTA                                                                     >  SRR4302536.772120/1‑94 (MQ=60)

                          AATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTA                                                                     >  SRR4302536.2557417/1‑94 (MQ=60)

                           ATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAG                                                                    >  SRR4302536.3592702/1‑94 (MQ=60)

                           ATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAG                                                                    >  SRR4302536.561025/1‑94 (MQ=60)

                            TAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGG                                                                   >  SRR4302536.256425/1‑94 (MQ=60)

                             AAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGG                                                                  <  SRR4302536.4162865/94‑1 (MQ=60)

                             AAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGG                                                                  <  SRR4302536.6453093/94‑1 (MQ=60)

                               GTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGA                                                                >  SRR4302536.4153194/1‑94 (MQ=60)

                               GTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGA                                                                <  SRR4302536.6188259/94‑1 (MQ=60)

                               GTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGA                                                                >  SRR4302536.1397250/1‑94 (MQ=60)

                                TTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGAT                                                               <  SRR4302536.4965864/94‑1 (MQ=60)

                                TTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGAT                                                               <  SRR4302536.6486010/94‑1 (MQ=60)

                                TTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGAT                                                               >  SRR4302536.6313597/1‑94 (MQ=60)

                                 TTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATG                                                              <  SRR4302536.3369845/94‑1 (MQ=60)

                                   TAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGaaggtg                                                            >  SRR4302536.4267427/1‑88 (MQ=60)

                                   TAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTT                                                            <  SRR4302536.1087011/94‑1 (MQ=60)

                                   TAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTT                                                            >  SRR4302536.2800284/1‑94 (MQ=60)

                                   TAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTT‑AAAATCGCTTAGGGGATGTTA                                                           >  SRR4302536.3352515/1‑94 (MQ=60)

                                     ACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTAT                                                          <  SRR4302536.111890/94‑1 (MQ=60)

                                     ACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTAT                                                          >  SRR4302536.5466705/1‑94 (MQ=60)

                                     ACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTAT                                                          >  SRR4302536.1214968/1‑94 (MQ=60)

                                      CTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATG                                                         >  SRR4302536.6083982/1‑94 (MQ=60)

                                      CTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATG                                                         >  SRR4302536.5286404/1‑94 (MQ=60)

                                      CTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATG                                                         >  SRR4302536.6219715/1‑94 (MQ=60)

                                      CTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATG                                                         >  SRR4302536.1403894/1‑94 (MQ=60)

                                      CTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATG                                                         >  SRR4302536.892515/1‑94 (MQ=60)

                                      CTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATG                                                         >  SRR4302536.681514/1‑94 (MQ=60)

                                      CTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATG                                                         >  SRR4302536.3453089/1‑94 (MQ=60)

                                       TCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGC                                                        >  SRR4302536.976147/1‑94 (MQ=60)

                                       TCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGC                                                        >  SRR4302536.2760274/1‑94 (MQ=60)

                                       TCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGC                                                        <  SRR4302536.3767422/94‑1 (MQ=60)

                                       TCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGC                                                        <  SRR4302536.3239851/94‑1 (MQ=60)

                                        CATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCT                                                       <  SRR4302536.588953/94‑1 (MQ=60)

                                        CATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCT                                                       >  SRR4302536.527075/1‑94 (MQ=60)

                                         ATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTC                                                      >  SRR4302536.2731044/1‑94 (MQ=60)

                                          TACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCA                                                     >  SRR4302536.1583693/1‑94 (MQ=60)

                                           ACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCAC                                                    >  SRR4302536.3977272/1‑94 (MQ=60)

                                           ACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCAC                                                    <  SRR4302536.2089203/94‑1 (MQ=60)

                                           ACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCAC                                                    >  SRR4302536.652891/1‑94 (MQ=60)

                                            CGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACG                                                   <  SRR4302536.2646389/94‑1 (MQ=60)

                                              CAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAA                                                 <  SRR4302536.3070647/94‑1 (MQ=60)

                                              CAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAA                                                 >  SRR4302536.6642590/1‑94 (MQ=60)

                                               AGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAA                                                >  SRR4302536.2414511/1‑94 (MQ=60)

                                                GTTCATAAAACCATTCCATATGAATGGTCGGTATCTTGTTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAA                                               >  SRR4302536.4472721/1‑94 (MQ=60)

                                                GTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAA                                               >  SRR4302536.3184589/1‑94 (MQ=60)

                                                GTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAA                                               >  SRR4302536.4576261/1‑94 (MQ=60)

                                                 TTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAA                                              <  SRR4302536.6311064/94‑1 (MQ=60)

                                                  TAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAG                                             <  SRR4302536.943440/94‑1 (MQ=60)

                                                  TAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAG                                             <  SRR4302536.3769752/94‑1 (MQ=60)

                                                   AATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGA                                            <  SRR4302536.2978869/94‑1 (MQ=60)

                                                   AATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGA                                            <  SRR4302536.3178822/94‑1 (MQ=60)

                                                    ATAAAACCATTCCATATGAATGGTCGGTATCTTCTTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGCTGCTATGCTCATGACAAAGAA                                           >  SRR4302536.4395768/1‑94 (MQ=60)

                                                    ATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAA                                           >  SRR4302536.2708912/1‑94 (MQ=60)

                                                     TAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAA                                          >  SRR4302536.3444572/1‑94 (MQ=60)

                                                     TAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAA                                          >  SRR4302536.5652592/1‑94 (MQ=60)

                                                      AAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAAT                                         <  SRR4302536.4613687/94‑1 (MQ=60)

                                                      AAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAAT                                         <  SRR4302536.4894232/94‑1 (MQ=60)

                                                       AAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATG                                        <  SRR4302536.1255657/94‑1 (MQ=60)

                                                        AACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGG                                       <  SRR4302536.1524375/94‑1 (MQ=60)

                                                        AACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGG                                       <  SRR4302536.5788017/94‑1 (MQ=60)

                                                        AACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGG                                       <  SRR4302536.872691/94‑1 (MQ=60)

                                                        AACCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGG                                       >  SRR4302536.493673/1‑94 (MQ=60)

                                                          CCATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGC                                     <  SRR4302536.812360/94‑1 (MQ=60)

                                                           CATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCG                                    >  SRR4302536.6783927/1‑94 (MQ=60)

                                                           CATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCG                                    >  SRR4302536.3647237/1‑94 (MQ=60)

                                                           CATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCG                                    >  SRR4302536.1357254/1‑94 (MQ=60)

                                                           CATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCG                                    >  SRR4302536.454854/1‑94 (MQ=60)

                                                           CATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCG                                    <  SRR4302536.435482/94‑1 (MQ=60)

                                                            ATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGT                                   >  SRR4302536.1986119/1‑94 (MQ=60)

                                                            ATTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGT                                   >  SRR4302536.4050518/1‑94 (MQ=60)

                                                             TTCCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTT                                  <  SRR4302536.6822789/94‑1 (MQ=60)

                                                               CCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTAT                                <  SRR4302536.3088384/94‑1 (MQ=60)

                                                               CCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTAT                                >  SRR4302536.1234209/1‑94 (MQ=60)

                                                               CCATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTAT                                >  SRR4302536.443784/1‑94 (MQ=60)

                                                                CATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATT                               >  SRR4302536.1090557/1‑94 (MQ=60)

                                                                 ATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTT                              >  SRR4302536.5083760/1‑94 (MQ=60)

                                                                 ATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTT                              >  SRR4302536.6117557/1‑94 (MQ=60)

                                                                 ATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTT                              <  SRR4302536.4026701/94‑1 (MQ=60)

                                                                 ATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTT                              >  SRR4302536.6526993/1‑94 (MQ=60)

                                                                 ATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTT                              >  SRR4302536.2291714/1‑94 (MQ=60)

                                                                 ATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTT                              >  SRR4302536.3600255/1‑94 (MQ=60)

                                                                 ATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTT                              >  SRR4302536.5465094/1‑94 (MQ=60)

                                                                 ATATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTT                              >  SRR4302536.5326256/1‑94 (MQ=60)

                                                                   ATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAG                            >  SRR4302536.5704171/1‑94 (MQ=60)

                                                                   ATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAG                            <  SRR4302536.6390401/94‑1 (MQ=60)

                                                                   ATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAG                            <  SRR4302536.1835986/94‑1 (MQ=60)

                                                                   ATGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAG                            <  SRR4302536.5108816/94‑1 (MQ=60)

                                                                    TGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGT                           >  SRR4302536.2231552/1‑94 (MQ=60)

                                                                    TGAATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGAGCGTTATTTAGT                           >  SRR4302536.4347686/1‑94 (MQ=60)

                                                                      AATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCT                         >  SRR4302536.6233382/1‑94 (MQ=60)

                                                                       ATGGTCGGTATCTTCTTGCCTTCAAAACAGCGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGACATCGGCGTTATTTAGTCTA                        >  SRR4302536.1345300/1‑94 (MQ=60)

                                                                       ATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTA                        >  SRR4302536.3142191/1‑94 (MQ=60)

                                                                       ATGGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTA                        <  SRR4302536.5521004/94‑1 (MQ=60)

                                                                         GGTCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATT                      >  SRR4302536.2699727/1‑94 (MQ=60)

                                                                           TCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAA                    <  SRR4302536.2472288/94‑1 (MQ=60)

                                                                           TCGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTACTCTATTAA                    <  SRR4302536.6800710/94‑1 (MQ=60)

                                                                            CGGTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAAC                   >  SRR4302536.4168164/1‑94 (MQ=60)

                                                                              GTATCTTATTGCCTTCAAATCAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACAC                 >  SRR4302536.4055131/1‑94 (MQ=60)

                                                                              GTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACAC                 <  SRR4302536.1137100/94‑1 (MQ=60)

                                                                              GTATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACAC                 >  SRR4302536.3555065/1‑94 (MQ=60)

                                                                               TATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACT                >  SRR4302536.3375508/1‑94 (MQ=60)

                                                                               TATCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACT                >  SRR4302536.5729905/1‑94 (MQ=60)

                                                                               TATCGTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACT                <  SRR4302536.2918616/94‑1 (MQ=60)

                                                                                 TCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGT              <  SRR4302536.2683174/94‑1 (MQ=60)

                                                                                 TCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGT              <  SRR4302536.2385677/94‑1 (MQ=60)

                                                                                 TCTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGT              <  SRR4302536.2683365/94‑1 (MQ=60)

                                                                                  CTTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTG             >  SRR4302536.6177433/1‑94 (MQ=60)

                                                                                   TTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACacctt            >  SRR4302536.483124/1‑89 (MQ=60)

                                                                                   TTATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGT            <  SRR4302536.5950775/94‑1 (MQ=60)

                                                                                    TATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTG           <  SRR4302536.3349598/94‑1 (MQ=60)

                                                                                    TATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTG           <  SRR4302536.3737797/94‑1 (MQ=60)

                                                                                    TATTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTG           >  SRR4302536.6021553/1‑94 (MQ=60)

                                                                                    TATTGCCTCCAAACCAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTG           <  SRR4302536.2768678/94‑1 (MQ=60)

                                                                                      TTGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGC         <  SRR4302536.2929816/94‑1 (MQ=60)

                                                                                       TGCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCG        >  SRR4302536.5824587/1‑94 (MQ=60)

                                                                                        GCCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCGG       >  SRR4302536.6071592/1‑94 (MQ=60)

                                                                                         CCTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCGGT      >  SRR4302536.3350100/1‑94 (MQ=60)

                                                                                          CTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCGGTA     >  SRR4302536.6114864/1‑94 (MQ=60)

                                                                                          CTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCGGTA     <  SRR4302536.5661012/94‑1 (MQ=60)

                                                                                          CTTCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCGGTA     >  SRR4302536.4098832/1‑94 (MQ=60)

                                                                                            TCAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCGGTACA   >  SRR4302536.6206246/1‑94 (MQ=60)

                                                                                             CAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCGGTACAA  >  SRR4302536.1577878/1‑94 (MQ=60)

                                                                                             CAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCGGTACAA  >  SRR4302536.5684805/1‑94 (MQ=60)

                                                                                             CAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCGGTACAA  <  SRR4302536.2433832/94‑1 (MQ=60)

AGAGGCAAACCATCTTCTGAACCACTAATAAGTTTTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTAAAAATCGCTTAGGGGATGTTATGCTCACGAAAAAGAAATGGGCGTTATTTAGTCTATTAACACTGTGTGGCGGTACAA  >  NC_000913/4059697‑4059883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`