Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,161,702	C→G	A162G (GCA→GGA)	btuB →	BtuB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,161,702	0	C	G	100.0%	777.1 / NA	235	A162G (GCA→GGA)	btuB	BtuB
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (97/138); total (97/138)

Only 100 of 247 total aligned reads displayed.

GGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGCAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATT  >  NC_000913/4161612‑4161791

ggCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTcaggag                                                                                         <  2:6093501/93‑1 (MQ=255)

ggCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTcaggag                                                                                         <  2:1865670/93‑1 (MQ=255)

  ccGGGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGACCCCGGAACGGAAATTTCAGGAggg                                                                                       <  1:6046910/93‑1 (MQ=255)

  ccGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAggg                                                                                       <  1:5601785/93‑1 (MQ=255)

  ccGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAggg                                                                                       <  1:5835671/93‑1 (MQ=255)

  ccGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAggg                                                                                       <  1:3696005/93‑1 (MQ=255)

  ccGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAggg                                                                                       <  2:2761799/93‑1 (MQ=255)

  ccGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAggg                                                                                       <  1:2528958/93‑1 (MQ=255)

   cgcgCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGt                                                                                      <  2:824404/93‑1 (MQ=255)

   cgcgCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGt                                                                                      <  1:4744540/93‑1 (MQ=255)

   cgcgCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGt                                                                                      <  2:1071872/93‑1 (MQ=255)

   cgcgCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGt                                                                                      <  2:1287138/93‑1 (MQ=255)

   cgcgCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAAACCGGAACGGAAATTTCAGGAgggg                                                                                      >  2:428019/1‑92 (MQ=255)

     cgcTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTgg                                                                                    <  2:1435502/93‑1 (MQ=255)

      gcTCCGCTTTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTggg                                                                                   <  1:4423643/93‑1 (MQ=255)

      gcTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTggg                                                                                   <  2:6411794/93‑1 (MQ=255)

       cTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTgggg                                                                                  >  2:1964803/1‑93 (MQ=255)

         ccGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGaa                                                                                <  2:204250/93‑1 (MQ=255)

          cGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAg                                                                               >  2:3895006/1‑93 (MQ=255)

          cGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAg                                                                               <  1:1047036/93‑1 (MQ=255)

           gCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGc                                                                              >  1:1833970/1‑93 (MQ=255)

            cTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCa                                                                             >  1:3073516/1‑93 (MQ=255)

              ttttATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGACCCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAAt                                                                           <  1:1743618/92‑1 (MQ=255)

              gTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAAt                                                                           >  1:6222265/1‑93 (MQ=255)

               tttATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATa                                                                          <  2:4213546/93‑1 (MQ=255)

               tttATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATa                                                                          >  2:5499416/1‑93 (MQ=255)

                 tATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACTGAAATTTCAGGAGGGTGGGGAAGCAATAGt                                                                        <  1:991966/93‑1 (MQ=255)

                 tATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGt                                                                        >  2:5065686/1‑93 (MQ=255)

                 tATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGt                                                                        >  2:2605119/1‑93 (MQ=255)

                   tGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTa                                                                      <  1:612519/93‑1 (MQ=255)

                    ggTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTAt                                                                     <  2:3160738/93‑1 (MQ=255)

                    ggTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTAt                                                                     <  1:5701578/93‑1 (MQ=255)

                     gTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATc                                                                    >  1:1494084/1‑93 (MQ=255)

                      ttCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCa                                                                   <  1:656801/93‑1 (MQ=255)

                       tCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAg                                                                  >  2:2975405/1‑93 (MQ=255)

                        ccGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGa                                                                 >  1:2257597/1‑93 (MQ=255)

                          gATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAAc                                                               >  2:2556/1‑93 (MQ=255)

                          gATGAAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGACCCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAAc                                                               <  1:6675193/93‑1 (MQ=255)

                             gCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTat                                                            >  1:4984268/1‑93 (MQ=255)

                             gCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTat                                                            >  2:2196758/1‑93 (MQ=255)

                               aaTAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTatga                                                          <  2:5879978/93‑1 (MQ=255)

                               aaTAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTatga                                                          >  2:5596429/1‑93 (MQ=255)

                                 tAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTatgatg                                                        <  1:5193051/93‑1 (MQ=255)

                                  aGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCCGGAGGGCGGGGAAGCAATAGTTATCAGAACTatgatgc                                                       >  1:6629666/1‑92 (MQ=255)

                                  aGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGt                                                       <  2:5184577/93‑1 (MQ=255)

                                   ggCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGtc                                                      <  2:4707935/93‑1 (MQ=255)

                                       gggTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTa                                                  >  1:2690640/1‑93 (MQ=255)

                                        ggtggtGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTAc                                                 <  2:5735123/93‑1 (MQ=255)

                                          tggtgAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACgc                                               <  2:5095893/93‑1 (MQ=255)

                                          tggtgAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACgc                                               <  1:5426870/93‑1 (MQ=255)

                                             tgAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACgcagc                                            >  1:5399923/1‑93 (MQ=255)

                                              gAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACgcagca                                           >  1:730432/1‑93 (MQ=255)

                                               aaTATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGcaa                                          >  2:1659494/1‑93 (MQ=255)

                                               aaTATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGcaa                                          <  2:736348/93‑1 (MQ=255)

                                                   tcatcaCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCaacaac                                      >  1:6243492/1‑93 (MQ=255)

                                                     atcaCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTg                                    >  2:5985243/1‑93 (MQ=255)

                                                     atcaCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTg                                    <  2:4520870/93‑1 (MQ=255)

                                                     atcaCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTg                                    <  1:1924063/93‑1 (MQ=255)

                                                      tcaCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTgg                                   <  1:2220046/93‑1 (MQ=255)

                                                      tcaCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTgg                                   <  1:3923690/93‑1 (MQ=255)

                                                       caCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTggg                                  <  2:5616411/93‑1 (MQ=255)

                                                        acgacgCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTgggg                                 >  1:3164876/1‑93 (MQ=255)

                                                        acgacgCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTgggg                                 >  1:4064942/1‑93 (MQ=255)

                                                         cgacgCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTggggg                                <  1:169011/93‑1 (MQ=255)

                                                         cgacgCGCGATGAACCCGGAACGGAAATTTCAGGAGGGCGGGGAAGCAAAAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTggggg                                >  2:5339408/1‑93 (MQ=255)

                                                          gacgCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGa                               <  2:4019510/93‑1 (MQ=255)

                                                          gacgCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGa                               <  1:4112722/93‑1 (MQ=255)

                                                           acgCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGAt                              >  2:4623980/1‑93 (MQ=255)

                                                           acgCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGAt                              >  1:5034227/1‑93 (MQ=255)

                                                           acgCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGAt                              >  1:680660/1‑93 (MQ=255)

                                                           acgCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGAt                              <  1:5570549/93‑1 (MQ=255)

                                                            cgcgcgATGAACCCGGAACGGAAATTTCAGGAGAGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATa                             >  2:2096560/1‑93 (MQ=255)

                                                             gcgcgATGAACCCGGAACTGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATaa                            <  1:3005893/93‑1 (MQ=255)

                                                               gcgATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGa                          >  2:2671326/1‑93 (MQ=255)

                                                                 gATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGaca                        >  2:2786081/1‑93 (MQ=255)

                                                                   tGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACg                      <  1:2451828/93‑1 (MQ=255)

                                                                      aCCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGt                   <  2:252058/93‑1 (MQ=255)

                                                                       cccGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTa                  >  2:3234331/1‑93 (MQ=255)

                                                                       cccGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTa                  >  1:255157/1‑93 (MQ=255)

                                                                       cccGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTa                  >  1:2045272/1‑93 (MQ=255)

                                                                        ccGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTaa                 >  1:152005/1‑93 (MQ=255)

                                                                        ccGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTaa                 <  1:4584694/93‑1 (MQ=255)

                                                                        ccGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTaa                 <  2:347253/93‑1 (MQ=255)

                                                                        ccGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTaa                 <  1:4450962/93‑1 (MQ=255)

                                                                          ggaacggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACg               <  2:369450/93‑1 (MQ=255)

                                                                          ggaacggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACg               >  2:6575885/1‑93 (MQ=255)

                                                                           gaacggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGc              <  2:2829450/93‑1 (MQ=255)

                                                                            aacggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCt             >  1:43041/1‑93 (MQ=255)

                                                                            aacggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCt             <  2:649942/93‑1 (MQ=255)

                                                                             acggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTg            <  1:2975405/93‑1 (MQ=255)

                                                                              cggaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGt           <  2:341104/93‑1 (MQ=255)

                                                                                gaaATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTg         <  1:2796275/93‑1 (MQ=255)

                                                                                 aaaTTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTgg        <  2:4982000/93‑1 (MQ=255)

                                                                                 aaaTTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTgg        <  1:5318022/93‑1 (MQ=255)

                                                                                 aaaTTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTgg        <  2:1700085/93‑1 (MQ=255)

                                                                                  aaTTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTggg       <  2:3332959/93‑1 (MQ=255)

                                                                                    tttCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCg     >  2:1572608/1‑93 (MQ=255)

                                                                                     ttCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGa    >  1:4046836/1‑93 (MQ=255)

                                                                                      tCAGGAGTGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGAt   <  1:2721879/93‑1 (MQ=255)

                                                                                       caggagGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGAtt  <  1:530687/93‑1 (MQ=255)

GGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGCAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATT  >  NC_000913/4161612‑4161791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTGGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGCAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATTATGC  >  NC_000913/4161609‑4161795

GTGGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGG                                                                                               >  SRR4302536.5454967/1‑94 (MQ=60)

 TGGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGA                                                                                              <  SRR4302536.5250003/94‑1 (MQ=60)

 TGGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGA                                                                                              >  SRR4302536.6826612/1‑94 (MQ=60)

 TGGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGA                                                                                              >  SRR4302536.1542676/1‑94 (MQ=60)

 TGGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGA                                                                                              <  SRR4302536.4415941/94‑1 (MQ=60)

  GGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAG                                                                                             <  SRR4302536.4092468/94‑1 (MQ=60)

  GGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAG                                                                                             >  SRR4302536.6388402/1‑94 (MQ=60)

  GGGCCGCGCTCCGCTGTTTATGCTTCCGATGCAATAGGCGGGGTGGTGAATATCAGCACAACGCGCGATGAACCCGGAACGGAAATTTCAGGAG                                                                                             <  SRR4302536.6595997/94‑1 (MQ=60)

   GGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGG                                                                                            <  SRR4302536.4104118/94‑1 (MQ=60)

     CCGGGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGACCCCGGAACGGAAATTTCAGGAGGGT                                                                                          <  SRR4302536.6227262/94‑1 (MQ=60)

     CCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGT                                                                                          <  SRR4302536.2605189/94‑1 (MQ=60)

     CCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGT                                                                                          <  SRR4302536.5734510/94‑1 (MQ=60)

     CCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGT                                                                                          <  SRR4302536.5768269/94‑1 (MQ=60)

     CCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGT                                                                                          <  SRR4302536.1940010/94‑1 (MQ=60)

     CCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGT                                                                                          <  SRR4302536.6009545/94‑1 (MQ=60)

     CCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGT                                                                                          <  SRR4302536.3806533/94‑1 (MQ=60)

      CGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTG                                                                                         <  SRR4302536.4887333/94‑1 (MQ=60)

      CGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGGGGTGAATATCATCACGACGCGCGCTGGACCCGGACCGGAAATTTCAGGAGGGGG                                                                                         >  SRR4302536.2612032/1‑94 (MQ=60)

         GCTCCGCTTTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGG                                                                                      <  SRR4302536.4556137/94‑1 (MQ=60)

         GCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGG                                                                                      >  SRR4302536.5822207/1‑94 (MQ=60)

         GCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGG                                                                                      >  SRR4302536.6263801/1‑94 (MQ=60)

          CTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGA                                                                                     >  SRR4302536.1542843/1‑94 (MQ=60)

           TCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAGCCCGGAACGGAAATTTCAGGAGGGTGGGGAA                                                                                    <  SRR4302536.416145/94‑1 (MQ=60)

             CGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGC                                                                                  >  SRR4302536.1889253/1‑94 (MQ=60)

             CGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGC                                                                                  <  SRR4302536.1078196/94‑1 (MQ=60)

              GCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCA                                                                                 >  SRR4302536.3163533/1‑94 (MQ=60)

               CTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAA                                                                                >  SRR4302536.4491926/1‑94 (MQ=60)

               CTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAA                                                                                >  SRR4302536.5857547/1‑94 (MQ=60)

                TGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAAT                                                                               >  SRR4302536.6407665/1‑94 (MQ=60)

                 TTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGACCCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATA                                                                              <  SRR4302536.1794127/94‑1 (MQ=60)

                    TATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACTGAAATTTCAGGAGGGTGGGGAAGCAATAGTT                                                                           <  SRR4302536.1021221/94‑1 (MQ=60)

                    TATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTT                                                                           <  SRR4302536.6779009/94‑1 (MQ=60)

                     ATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTA                                                                          >  SRR4302536.805803/1‑94 (MQ=60)

                      TGGTTCTGATGCAATAGGAGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTAT                                                                         <  SRR4302536.2657721/94‑1 (MQ=60)

                      TGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCTCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTAT                                                                         <  SRR4302536.5571594/94‑1 (MQ=60)

                      TGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTAT                                                                         >  SRR4302536.6213361/1‑94 (MQ=60)

                      TGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTAT                                                                         >  SRR4302536.6427394/1‑94 (MQ=60)

                      TGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTAT                                                                         <  SRR4302536.630808/94‑1 (MQ=60)

                       GGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATC                                                                        >  SRR4302536.1538201/1‑94 (MQ=60)

                       GGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATC                                                                        <  SRR4302536.5871115/94‑1 (MQ=60)

                        GTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCA                                                                       >  SRR4302536.2545776/1‑94 (MQ=60)

                        GTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCA                                                                       <  SRR4302536.563326/94‑1 (MQ=60)

                        GTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCA                                                                       <  SRR4302536.6843719/94‑1 (MQ=60)

                         TTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAG                                                                      <  SRR4302536.676056/94‑1 (MQ=60)

                         TTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAG                                                                      <  SRR4302536.5516591/94‑1 (MQ=60)

                         TTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAG                                                                      <  SRR4302536.2031756/94‑1 (MQ=60)

                          TCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGA                                                                     >  SRR4302536.2325943/1‑94 (MQ=60)

                           gcgacGCAATAGGCGGGGTGGTTAATATCATCACGACGCGCGATGAACCCTGAACGGAACTTTCTGGAGGGTGGGGAAACAATAGTTATCAGAA                                                                    <  SRR4302536.2316540/89‑1 (MQ=60)

                            GGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAAC                                                                   >  SRR4302536.3955038/1‑94 (MQ=60)

                            CGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAAC                                                                   <  SRR4302536.3051734/94‑1 (MQ=60)

                            CGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAAC                                                                   >  SRR4302536.4205885/1‑94 (MQ=60)

                             GATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACT                                                                  <  SRR4302536.2149659/94‑1 (MQ=60)

                             GATGAAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGACCCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACT                                                                  <  SRR4302536.6873529/94‑1 (MQ=60)

                               TGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTAT                                                                >  SRR4302536.5133929/1‑94 (MQ=60)

                                GCAATAGGCGGTGTGGTGAATATCATCACGACGCGAGATGAGCCCGGAACGAAAGTTTCAGGAGGGTAGGGAAGCAATAGTTATCAGAACTATG                                                               <  SRR4302536.6609356/94‑1 (MQ=60)

                                GCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATG                                                               <  SRR4302536.4604549/94‑1 (MQ=60)

                                  AATAGTCGGAGTGGTGAATATCATCCCGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGAT                                                             <  SRR4302536.1772588/94‑1 (MQ=60)

                                   ATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATG                                                            <  SRR4302536.3706315/94‑1 (MQ=60)

                                    TAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCCGGAGGGCGGGGAAGCAATAGTTATCAGAACTATGATGC                                                           >  SRR4302536.6826857/1‑94 (MQ=60)

                                    TAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGT                                                           >  SRR4302536.3688043/1‑94 (MQ=60)

                                    TAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGT                                                           <  SRR4302536.5347904/94‑1 (MQ=60)

                                    TAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGT                                                           >  SRR4302536.2597321/1‑94 (MQ=60)

                                      GGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCT                                                         <  SRR4302536.750243/94‑1 (MQ=60)

                                      GGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCT                                                         <  SRR4302536.6059517/94‑1 (MQ=60)

                                      CGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGACT                                                         <  SRR4302536.491899/94‑1 (MQ=60)

                                       GCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTC                                                        <  SRR4302536.2473726/94‑1 (MQ=60)

                                        CGGGGTGGGGAATATCATCACGACGCGCGATGAAACCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCA                                                       >  SRR4302536.4212940/1‑94 (MQ=60)

                                         GGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTA                                                      >  SRR4302536.6622862/1‑94 (MQ=60)

                                         GGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTA                                                      >  SRR4302536.741430/1‑94 (MQ=60)

                                         GGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTA                                                      >  SRR4302536.2770965/1‑94 (MQ=60)

                                             TGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCA                                                  <  SRR4302536.5589120/94‑1 (MQ=60)

                                              GGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAG                                                 <  SRR4302536.5036487/94‑1 (MQ=60)

                                              GGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAG                                                 <  SRR4302536.4680855/94‑1 (MQ=60)

                                               GTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGC                                                >  SRR4302536.5561222/1‑94 (MQ=60)

                                                TGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCA                                               >  SRR4302536.751836/1‑94 (MQ=60)

                                                 GAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAA                                              >  SRR4302536.1617025/1‑94 (MQ=60)

                                                 GAATATCATCACGACACGCGATGAACCCTGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTTTCAGAACTATGATGTCTCTACGCAGCAA                                              >  SRR4302536.5451201/1‑94 (MQ=60)

                                                  AATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAAC                                             >  SRR4302536.5472599/1‑94 (MQ=60)

                                                    TATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAA                                           >  SRR4302536.3244033/1‑94 (MQ=60)

                                                    TATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAA                                           >  SRR4302536.5390384/1‑94 (MQ=60)

                                                     ATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAAC                                          >  SRR4302536.6429488/1‑94 (MQ=60)

                                                       CATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTG                                        <  SRR4302536.2021134/94‑1 (MQ=60)

                                                        ATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGG                                       <  SRR4302536.1981954/94‑1 (MQ=60)

                                                         TCACGACGCGCGATGCGCCCGGAACGGAAATTTCATGAGCGTGAGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAGCAACTGGG                                      <  SRR4302536.3279055/94‑1 (MQ=60)

                                                         TCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGG                                      <  SRR4302536.4040289/94‑1 (MQ=60)

                                                         TCACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGG                                      <  SRR4302536.2287186/94‑1 (MQ=60)

                                                          CACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGG                                     >  SRR4302536.3257591/1‑94 (MQ=60)

                                                          CACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGG                                     >  SRR4302536.4185421/1‑94 (MQ=60)

                                                           ACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCGATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGG                                    <  SRR4302536.6589766/94‑1 (MQ=60)

                                                           ACGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGG                                    <  SRR4302536.266318/94‑1 (MQ=60)

                                                            CGACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGA                                   <  SRR4302536.173419/94‑1 (MQ=60)

                                                             GACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGAT                                  <  SRR4302536.4234719/94‑1 (MQ=60)

                                                             GACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGAT                                  >  SRR4302536.700619/1‑94 (MQ=60)

                                                             GACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGAT                                  >  SRR4302536.5185121/1‑94 (MQ=60)

                                                             GACGCGCGATGAACCCGAAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGAT                                  <  SRR4302536.1800349/94‑1 (MQ=60)

                                                              ACGCGCGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATA                                 <  SRR4302536.5736388/94‑1 (MQ=60)

                                                                GCGCGATGAACCCGGAACTGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAG                               <  SRR4302536.3094269/94‑1 (MQ=60)

                                                                   CGATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACC                            >  SRR4302536.5163621/1‑94 (MQ=60)

                                                                    GATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACAC                           >  SRR4302536.3121660/1‑94 (MQ=60)

                                                                     ATGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACG                          <  SRR4302536.2860289/94‑1 (MQ=60)

                                                                      TGAACCCGGAACGGGAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAACACACGG                         >  SRR4302536.5496400/1‑94 (MQ=60)

                                                                      TGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGG                         <  SRR4302536.2525886/94‑1 (MQ=60)

                                                                      TGAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGG                         <  SRR4302536.5888467/94‑1 (MQ=60)

                                                                       GAACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGG                        >  SRR4302536.278546/1‑94 (MQ=60)

                                                                        AACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGT                       <  SRR4302536.6904347/94‑1 (MQ=60)

                                                                         ACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTA                      >  SRR4302536.261982/1‑94 (MQ=60)

                                                                         ACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTA                      <  SRR4302536.4045810/94‑1 (MQ=60)

                                                                         ACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTA                      >  SRR4302536.2876080/1‑94 (MQ=60)

                                                                         ACCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTA                      >  SRR4302536.2106849/1‑94 (MQ=60)

                                                                          CCCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAA                     >  SRR4302536.155941/1‑94 (MQ=60)

                                                                           CCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAAC                    <  SRR4302536.4584638/94‑1 (MQ=60)

                                                                           CCGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAAC                    <  SRR4302536.4722303/94‑1 (MQ=60)

                                                                            CGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACG                   <  SRR4302536.1415755/94‑1 (MQ=60)

                                                                            CGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACG                   >  SRR4302536.6845580/1‑94 (MQ=60)

                                                                            CGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACG                   <  SRR4302536.1818919/94‑1 (MQ=60)

                                                                            CGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACG                   >  SRR4302536.4574424/1‑94 (MQ=60)

                                                                            CGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACG                   <  SRR4302536.3150030/94‑1 (MQ=60)

                                                                            CGGAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACG                   <  SRR4302536.3088188/94‑1 (MQ=60)

                                                                             GGAACTGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGC                  <  SRR4302536.5215632/94‑1 (MQ=60)

                                                                              GAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCT                 <  SRR4302536.449107/94‑1 (MQ=60)

                                                                              GAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCT                 >  SRR4302536.44237/1‑94 (MQ=60)

                                                                              GAACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCT                 >  SRR4302536.2313572/1‑94 (MQ=60)

                                                                                ACGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGT               <  SRR4302536.3062996/94‑1 (MQ=60)

                                                                                 CGGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTT              <  SRR4302536.1662057/94‑1 (MQ=60)

                                                                                  GGAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTG             <  SRR4302536.477779/94‑1 (MQ=60)

                                                                                   GAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGG            >  SRR4302536.5322751/1‑94 (MQ=60)

                                                                                   GAAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGG            <  SRR4302536.2879232/94‑1 (MQ=60)

                                                                                    AAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGG           <  SRR4302536.5476870/94‑1 (MQ=60)

                                                                                    AAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGG           <  SRR4302536.4412265/94‑1 (MQ=60)

                                                                                    AAATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGG           >  SRR4302536.6353246/1‑94 (MQ=60)

                                                                                     AATTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGC          >  SRR4302536.2311087/1‑94 (MQ=60)

                                                                                       TTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGA        >  SRR4302536.4166793/1‑94 (MQ=60)

                                                                                       TTTCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGA        >  SRR4302536.5768128/1‑94 (MQ=60)

                                                                                         TCAGGAGTGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATT      <  SRR4302536.2803061/94‑1 (MQ=60)

                                                                                         TCAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATAATGTCTTTACGCAGCAACAACTGGGGGATAAGACACGGGGAAAGGTGTTGGGCGATT      >  SRR4302536.6877779/1‑94 (MQ=60)

                                                                                          CAGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATTA     <  SRR4302536.544256/94‑1 (MQ=60)

                                                                                           AGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATTAT    <  SRR4302536.470449/94‑1 (MQ=60)

                                                                                           AGGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATTAT    >  SRR4302536.4879902/1‑94 (MQ=60)

                                                                                            GGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATTATG   <  SRR4302536.1490738/94‑1 (MQ=60)

                                                                                            GGAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATTATG   <  SRR4302536.6371059/94‑1 (MQ=60)

                                                                                             GAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATTATGC  <  SRR4302536.1461482/94‑1 (MQ=60)

GTGGGCCGCGCTCCGCTGTTTATGGTTCCGATGCAATAGGCGGGGTGGTGAATATCATCACGACGCGCGATGAACCCGGAACGGAAATTTCAGCAGGGTGGGGAAGCAATAGTTATCAGAACTATGATGTCTCTACGCAGCAACAACTGGGGGATAAGACACGGGTAACGCTGTTGGGCGATTATGC  >  NC_000913/4161609‑4161795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`