Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,125,293 |
T→C |
G248G (GGA→GGG) |
glcD ← |
glycolate oxidase subunit D |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,125,293 | 0 | T | C | 99.6%
| 784.7
/ ‑5.1
| 248 | G248G (GGA→GGG) | glcD | glycolate oxidase subunit D |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (127/119); total (127/121) |
| Fisher's exact test for biased strand distribution p-value = 4.86e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.91e-01 |
Only 100 of 256 total aligned reads displayed.
AAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCAC > NC_000913/3125203‑3125382
|
aaaaTCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGccc < 1:6666947/93‑1 (MQ=255)
aaaTCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCg < 2:3158927/93‑1 (MQ=255)
aaTCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCgg < 2:3733594/93‑1 (MQ=255)
aTCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGc < 1:6231773/93‑1 (MQ=255)
aTCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGc < 2:2629452/93‑1 (MQ=255)
aTCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCAGGc > 1:1868478/1‑93 (MQ=255)
tCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCt > 2:7389804/1‑93 (MQ=255)
tCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCtttt < 1:8022972/93‑1 (MQ=255)
ccgccgCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCttttt > 2:186367/1‑93 (MQ=255)
ccgcccCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCA‑CAACCGCAAGCCCGGCTTTTTc < 2:7824207/93‑1 (MQ=255)
cgccgcGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTc < 1:9481207/93‑1 (MQ=255)
ccgcGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTa < 2:1451422/93‑1 (MQ=255)
ccgcGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTa > 2:4387341/1‑93 (MQ=255)
gcgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGa < 1:3771137/93‑1 (MQ=255)
gcgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGa < 1:6342239/93‑1 (MQ=255)
cgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAg > 1:2109983/1‑93 (MQ=255)
ggATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCTGCAACCGCAAGCCCGGCTTTTTCTACCGAGt < 2:4652421/93‑1 (MQ=255)
gATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTc < 2:5437105/93‑1 (MQ=255)
gATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTc > 2:2224110/1‑93 (MQ=255)
tCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCaa > 1:4221202/1‑93 (MQ=255)
cGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCaaa > 1:5475504/1‑93 (MQ=255)
aCAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGc > 1:1678680/1‑93 (MQ=255)
cAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCt < 1:5880000/93‑1 (MQ=255)
aGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTg < 2:2531710/93‑1 (MQ=255)
aGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTg < 2:8658617/93‑1 (MQ=255)
ggTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTgg > 1:8218770/1‑93 (MQ=255)
ggTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTgg > 2:6310332/1‑93 (MQ=255)
ttATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCt > 1:7087044/1‑93 (MQ=255)
aTCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTaa > 1:3439891/1‑93 (MQ=255)
ccATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACa < 1:9396779/93‑1 (MQ=255)
atcatcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGa > 2:6647654/1‑93 (MQ=255)
atcatcTCCAGCCCGCCAGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGa > 2:6138842/1‑93 (MQ=255)
tcatcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGaa > 1:5562420/1‑93 (MQ=255)
catcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAc < 1:8058383/93‑1 (MQ=255)
catcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAc < 1:4672767/93‑1 (MQ=255)
catcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAc < 2:5345481/93‑1 (MQ=255)
atcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAcc < 1:7735491/93‑1 (MQ=255)
tctcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAccc > 1:6958057/1‑93 (MQ=255)
tctcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAccc < 2:7481976/93‑1 (MQ=255)
tctcCAGCCCCCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAccc > 2:9702163/1‑93 (MQ=255)
ctcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCcg < 1:1371790/93‑1 (MQ=255)
ctcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCcg > 1:1638348/1‑93 (MQ=255)
ctcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCcg < 1:7952009/93‑1 (MQ=255)
tcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCcgc > 1:3251099/1‑93 (MQ=255)
cAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCgcgc > 2:2428621/1‑93 (MQ=255)
cAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCgcgc > 2:9105749/1‑93 (MQ=255)
aGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGcc > 2:3930615/1‑93 (MQ=255)
aGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGcc < 2:2087209/93‑1 (MQ=255)
gCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCa < 1:8241237/93‑1 (MQ=255)
gCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCa < 2:4277102/93‑1 (MQ=255)
gCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCa < 2:8122305/93‑1 (MQ=255)
cgGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGggcg > 2:293347/1‑93 (MQ=255)
ggggATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAg > 2:1606644/1‑75 (MQ=255)
gggATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGggcggc > 2:9225001/1‑93 (MQ=255)
gggATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGggcggc > 2:1140636/1‑93 (MQ=255)
gggATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGggcggc > 1:9237049/1‑93 (MQ=255)
ggATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCt < 1:5624825/93‑1 (MQ=255)
aTAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTc > 1:4296139/1‑93 (MQ=255)
aTAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTc > 2:8357740/1‑93 (MQ=255)
tAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACGCGCGCCACGGGCGGCTTCg > 2:2162143/1‑93 (MQ=255)
tAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCg > 2:537218/1‑93 (MQ=255)
aTGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgc > 1:6442188/1‑93 (MQ=255)
aTGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgc < 1:5286931/93‑1 (MQ=255)
tGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgca < 2:503513/93‑1 (MQ=255)
gCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgcag > 1:6746343/1‑93 (MQ=255)
cATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgcagca > 1:73256/1‑93 (MQ=255)
ttGGCGATGATGGCACCAACCGCAAGGCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGcagcagc < 1:3529875/93‑2 (MQ=255)
ggCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGctt > 1:2381378/1‑93 (MQ=255)
gCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGcttt < 2:2694742/93‑1 (MQ=255)
gCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGcttt < 1:8565981/93‑1 (MQ=255)
cGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTa < 1:603993/93‑1 (MQ=255)
gatgatGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAc > 1:2582382/1‑93 (MQ=255)
gatgatGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAc < 1:9884771/93‑1 (MQ=255)
gatgatGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAc < 1:9774745/93‑1 (MQ=255)
atgatgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAcc > 1:3319942/1‑93 (MQ=255)
atgatgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAcc > 2:138709/1‑93 (MQ=255)
gatgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGt < 2:8016605/93‑1 (MQ=255)
gatgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGt > 1:3135146/1‑93 (MQ=255)
gatgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGt < 1:509876/93‑1 (MQ=255)
atgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTc > 2:5542397/1‑93 (MQ=255)
tgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCa < 2:5010512/93‑1 (MQ=255)
tgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCa > 2:7569831/1‑93 (MQ=255)
gTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCAc > 1:4732634/1‑93 (MQ=255)
gTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCAc > 2:6809997/1‑93 (MQ=255)
tCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACt > 1:9096586/1‑93 (MQ=255)
cACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACtt < 2:5173271/93‑1 (MQ=255)
cACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACtt > 2:3347056/1‑93 (MQ=255)
aCCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTc > 2:9448748/1‑93 (MQ=255)
aCCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTc > 2:4608931/1‑93 (MQ=255)
aCCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTc > 1:1076896/1‑93 (MQ=255)
aCCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTc > 2:8131492/1‑93 (MQ=255)
aCCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGATGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTc > 2:9025942/1‑93 (MQ=255)
ccAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCg > 2:2776453/1‑93 (MQ=255)
ccAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCg < 1:2855939/93‑1 (MQ=255)
cAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCgg > 2:7669391/1‑93 (MQ=255)
ccGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCggtgg < 1:9010538/93‑1 (MQ=255)
gCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTc < 1:852981/93‑1 (MQ=255)
cAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTcc > 2:4637794/1‑92 (MQ=255)
cAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCa < 2:5925971/93‑1 (MQ=255)
aaGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCAc > 2:8580366/1‑93 (MQ=255)
|
AAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCAC > NC_000913/3125203‑3125382
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AATAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCG > NC_000913/3125200‑3125386
|
AATAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGC > SRR4302540.2557158/1‑94 (MQ=60)
AATAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGC < SRR4302540.8778975/94‑1 (MQ=60)
tgaaccgctcttccgatctagcgcttAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCC < SRR4302540.6260754/68‑1 (MQ=60)
TAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCC < SRR4302540.5035728/94‑1 (MQ=60)
AAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCG < SRR4302540.6740628/94‑1 (MQ=60)
AAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCG < SRR4302540.6419696/94‑1 (MQ=60)
AATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCAGGC > SRR4302540.1888951/1‑94 (MQ=60)
ATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCT > SRR4302540.7917375/1‑94 (MQ=60)
ATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCT < SRR4302540.6301082/94‑1 (MQ=60)
CTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTT < SRR4302540.9839241/94‑1 (MQ=60)
TTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTT < SRR4302540.1818382/94‑1 (MQ=60)
TCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTT > SRR4302540.8109849/1‑94 (MQ=60)
TCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTT < SRR4302540.8116280/94‑1 (MQ=60)
CCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTC < SRR4302540.9345805/94‑1 (MQ=60)
CGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCT < SRR4302540.5149826/94‑1 (MQ=60)
CGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCT > SRR4302540.5171830/1‑94 (MQ=60)
CGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCT < SRR4302540.9593639/94‑1 (MQ=60)
GCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTA > SRR4302540.7145095/1‑94 (MQ=60)
CGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACC < SRR4302540.432992/94‑1 (MQ=60)
CGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACC < SRR4302540.3958456/94‑1 (MQ=60)
GCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCG > SRR4302540.8659723/1‑94 (MQ=60)
GCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAG < SRR4302540.6412863/94‑1 (MQ=60)
GCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAG < SRR4302540.9491844/94‑1 (MQ=60)
GCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAG > SRR4302540.2132630/1‑94 (MQ=60)
GCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAG < SRR4302540.3812280/94‑1 (MQ=60)
CGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGC > SRR4302540.6033085/1‑94 (MQ=60)
ATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAA > SRR4302540.4267158/1‑94 (MQ=60)
TCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAA > SRR4302540.5535770/1‑94 (MQ=60)
GACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGC > SRR4302540.4147097/1‑94 (MQ=60)
GACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGC > SRR4302540.1696905/1‑94 (MQ=60)
CAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTG < SRR4302540.5944987/94‑1 (MQ=60)
CAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTG < SRR4302540.1521942/94‑1 (MQ=60)
AGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGG < SRR4302540.1687934/94‑1 (MQ=60)
AGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGG < SRR4302540.701841/94‑1 (MQ=60)
AGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGG > SRR4302540.8314293/1‑94 (MQ=60)
GGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGC > SRR4302540.4548900/1‑94 (MQ=60)
GGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGC < SRR4302540.5864253/94‑1 (MQ=60)
GTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCT > SRR4302540.7165912/1‑94 (MQ=60)
TTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCCTTTTCTATCGCGGCAACGCTGGCTA > SRR4302540.3778890/1‑94 (MQ=60)
TATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAA > SRR4302540.3477288/1‑94 (MQ=60)
TCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACA < SRR4302540.806696/94‑1 (MQ=60)
TCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACA < SRR4302540.6273959/94‑1 (MQ=60)
TCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACA < SRR4302540.5572456/94‑1 (MQ=60)
CCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAG < SRR4302540.9508588/94‑1 (MQ=60)
CCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAG > SRR4302540.2648807/1‑94 (MQ=60)
cttccgatctagcgcttCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGA < SRR4302540.1624227/77‑1 (MQ=60)
ATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAA > SRR4302540.9157132/1‑94 (MQ=60)
ATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAA > SRR4302540.5623675/1‑94 (MQ=60)
ATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAA < SRR4302540.9548826/94‑1 (MQ=60)
CATCTCCAGCCCGCCGGGGATAATGCCATTGGCGTTGATTTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACC < SRR4302540.4722777/94‑1 (MQ=60)
CATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACC < SRR4302540.8151943/94‑1 (MQ=60)
CATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACC < SRR4302540.4722776/94‑1 (MQ=60)
CATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACC < SRR4302540.6855170/94‑1 (MQ=60)
ATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCC < SRR4302540.7825801/94‑1 (MQ=60)
ATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCC > SRR4302540.7035464/1‑94 (MQ=60)
ATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCC < SRR4302540.6407693/94‑1 (MQ=60)
ATCTCCAGCCCGCCGGGGAGAATGCCATTGGCGATGATGTCACGAACCGCAAGCCCGGCTTTTTCTACCTAGTCAAAGCTGGCTAATAGAACCC > SRR4302540.686142/1‑94 (MQ=60)
TCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCG > SRR4302540.1656263/1‑94 (MQ=60)
CTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGC < SRR4302540.1386328/94‑1 (MQ=60)
CTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGC > SRR4302540.3286522/1‑94 (MQ=60)
CTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGC < SRR4302540.8044704/94‑1 (MQ=60)
TCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCG > SRR4302540.257996/1‑94 (MQ=60)
AGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCA < SRR4302540.1721456/94‑1 (MQ=60)
GCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCAC < SRR4302540.8337021/94‑1 (MQ=60)
CCGCCGGGGATAATGGCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGG < SRR4302540.3270504/94‑1 (MQ=60)
CCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGG > SRR4302540.2814403/1‑94 (MQ=60)
CCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGG > SRR4302540.4723317/1‑94 (MQ=60)
CGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGG > SRR4302540.5645456/1‑94 (MQ=60)
CGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGG > SRR4302540.1256171/1‑94 (MQ=60)
CGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGG < SRR4302540.3296340/94‑1 (MQ=60)
CGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGG > SRR4302540.87846/1‑94 (MQ=60)
GCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGC > SRR4302540.5941766/1‑94 (MQ=60)
GCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGC > SRR4302540.1965307/1‑94 (MQ=60)
GCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGC < SRR4302540.4593759/94‑1 (MQ=60)
GCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGC < SRR4302540.3034191/94‑1 (MQ=60)
GCCGGGGATAATGCCATTGGAGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGC > SRR4302540.9857993/1‑94 (MQ=60)
CCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCG < SRR4302540.35223/94‑1 (MQ=60)
GGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGC < SRR4302540.214761/94‑1 (MQ=60)
GGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGC > SRR4302540.8125421/1‑94 (MQ=60)
GGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGC > SRR4302540.9347717/1‑94 (MQ=60)
GGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTT < SRR4302540.5686727/94‑1 (MQ=60)
GGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTT > SRR4302540.347163/1‑94 (MQ=60)
GATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTC < SRR4302540.9381089/94‑1 (MQ=60)
GATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTC < SRR4302540.5961859/94‑1 (MQ=60)
GATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTC > SRR4302540.3037531/1‑94 (MQ=60)
GATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTC > SRR4302540.4342889/1‑94 (MQ=60)
TAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGG > SRR4302540.6343934/1‑94 (MQ=60)
AATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGC > SRR4302540.6513892/1‑94 (MQ=60)
AATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGC > SRR4302540.6513890/1‑94 (MQ=60)
ATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCA < SRR4302540.5344709/94‑1 (MQ=60)
TGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCATAGCTGGCTCACACGACCCGCGCCACGCGCGGCTTAGGAAG > SRR4302540.6820886/1‑94 (MQ=60)
TGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAG > SRR4302540.6820887/1‑94 (MQ=60)
CCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCA > SRR4302540.7268549/1‑94 (MQ=60)
CCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCA > SRR4302540.74013/1‑94 (MQ=60)
CATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAG > SRR4302540.8334122/1‑94 (MQ=60)
ttgcggatggtgtgacccacgGCAAGCCCGGCTTTTTCTACCGAGACAAAGCTGGCTAACAGAACCGGCGCCCCCGGCGGCTTCGGCAGCAGCT < SRR4302540.3568387/73‑1 (MQ=58)
TTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCT < SRR4302540.3568386/94‑1 (MQ=60)
TTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCT < SRR4302540.3346374/94‑1 (MQ=60)
TTGGCGATGATGGCACCAACCGCAAGGCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCT < SRR4302540.3568385/94‑1 (MQ=60)
TGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTT > SRR4302540.2407031/1‑94 (MQ=60)
GCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTA < SRR4302540.8665456/94‑1 (MQ=60)
CGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAC > SRR4302540.2610219/1‑94 (MQ=60)
CGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAC > SRR4302540.8822922/1‑94 (MQ=60)
CGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAC < SRR4302540.610460/94‑1 (MQ=60)
GATGATGTCACCACCCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACC < SRR4302540.918919/94‑1 (MQ=60)
GATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACC > SRR4302540.3356362/1‑94 (MQ=60)
GATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACC < SRR4302540.7628421/94‑1 (MQ=60)
GATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACC < SRR4302540.9889329/94‑1 (MQ=60)
GATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACC < SRR4302540.10000191/94‑1 (MQ=60)
ATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCG > SRR4302540.5197123/1‑94 (MQ=60)
TGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGT > SRR4302540.3169345/1‑94 (MQ=60)
GATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTNCCGTC < SRR4302540.8164709/94‑1 (MQ=60)
GATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTC > SRR4302540.9945398/1‑94 (MQ=60)
GATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTC < SRR4302540.515348/94‑1 (MQ=60)
TGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCAC > SRR4302540.4783172/1‑94 (MQ=60)
TGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCAC < SRR4302540.6630909/94‑1 (MQ=60)
GTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCATGGGCGGCTTCGGCAGCAGCTTTACCGTCACT < SRR4302540.5566445/94‑1 (MQ=60)
GTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACT > SRR4302540.9205885/1‑94 (MQ=60)
GTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTAACCGTCACT > SRR4302540.839859/1‑94 (MQ=60)
GTCACCAACCGCAAGCCCGGCGCCCTCCACCGAGTCTAAGCGGGCTAACAGAACCCGCGCCAGGGGCGGGTTCGGCAGCAGCTTTACCGTCACT < SRR4302540.3538296/94‑1 (MQ=36)
CACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCCGCAGCTTTACCGTCACTTC > SRR4302540.8381618/1‑94 (MQ=60)
CACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTC > SRR4302540.1087902/1‑94 (MQ=60)
CCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGG < SRR4302540.2886879/94‑1 (MQ=60)
CCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGG > SRR4302540.5439068/1‑94 (MQ=60)
AACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGACCCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTG < SRR4302540.2263596/94‑1 (MQ=60)
AACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAAAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTG < SRR4302540.497044/94‑1 (MQ=60)
ACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTCGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGG > SRR4302540.7461287/1‑94 (MQ=60)
CCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGT < SRR4302540.9118631/94‑1 (MQ=60)
GCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCA < SRR4302540.862037/94‑1 (MQ=60)
GCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCA > SRR4302540.8212023/1‑94 (MQ=60)
CAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCAC < SRR4302540.7304472/94‑1 (MQ=60)
AAGCCCGGCTTTTTCTACCGAGTCAAAGCTTGCTAACAGAACCCGCGCCACGTGCGGCTTTGGCAGCAGCTTTACCGTCACTTCGGTGGTCACG > SRR4302540.9076513/1‑94 (MQ=60)
AAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCACG > SRR4302540.7235822/1‑94 (MQ=60)
AAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCACG > SRR4302540.2926974/1‑94 (MQ=60)
GCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCACGCC < SRR4302540.2449439/94‑1 (MQ=60)
CCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCACGCCG < SRR4302540.6579544/94‑1 (MQ=60)
CCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCACGCCG < SRR4302540.6579545/94‑1 (MQ=60)
|
AATAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCG > NC_000913/3125200‑3125386
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
