Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,125,293 |
T→C |
G248G (GGA→GGG) |
glcD ← |
glycolate oxidase subunit D |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,125,293 | 0 | T | C | 100.0%
| 685.4
/ NA
| 213 | G248G (GGA→GGG) | glcD | glycolate oxidase subunit D |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (116/97); total (116/97) |
Only 100 of 225 total aligned reads displayed.
AAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCAC > NC_000913/3125203‑3125382
|
aaaaTCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGccc > 2:3511061/1‑93 (MQ=255)
aaaaTCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGccc < 1:2670024/93‑1 (MQ=255)
aaaaTCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGccc < 2:1904813/93‑1 (MQ=255)
aaTCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCgg < 1:6148565/93‑1 (MQ=255)
tCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCt > 1:1326368/1‑93 (MQ=255)
ttCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCttt > 1:4582602/1‑93 (MQ=255)
ttCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCttt > 1:2621018/1‑93 (MQ=255)
tCCGCCGCGCGGATCGACAGTTTATCCATCATCTCCAGCCCGCGGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCtttt < 2:2897953/93‑1 (MQ=255)
gccgcGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCt > 2:2891078/1‑93 (MQ=255)
ccgcGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTa < 2:5384215/93‑1 (MQ=255)
ccgcGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTa > 2:1132234/1‑93 (MQ=255)
cgcgcgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTAc < 1:5071824/93‑1 (MQ=255)
cgcgcgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTAc > 2:608243/1‑93 (MQ=255)
gcgcgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTAcc < 2:3025487/93‑1 (MQ=255)
cgcgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCg > 2:555294/1‑93 (MQ=255)
cgcgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCg > 1:4851876/1‑93 (MQ=255)
cgcgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACAGCAAGCCCGGCTTTTTCTACCg < 2:3618864/93‑1 (MQ=255)
gcgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGa < 1:1680401/93‑1 (MQ=255)
cgGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAg > 2:3536295/1‑93 (MQ=255)
ggATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGt > 1:777487/1‑93 (MQ=255)
aTCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCa > 2:1534351/1‑93 (MQ=255)
tCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCaa > 1:906382/1‑93 (MQ=255)
tCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCaa < 1:4331756/93‑1 (MQ=255)
gACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAg > 1:1210280/1‑93 (MQ=255)
gACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAg > 1:5581699/1‑93 (MQ=255)
gACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAg > 1:4020423/1‑93 (MQ=255)
aCAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGc > 1:2147394/1‑93 (MQ=255)
aCAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGc > 1:258735/1‑93 (MQ=255)
cAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCt < 1:668287/93‑1 (MQ=255)
aGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTg > 1:3644848/1‑93 (MQ=255)
aGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTg > 1:1174054/1‑93 (MQ=255)
aGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTg < 2:2229965/93‑1 (MQ=255)
ggTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTgg > 1:2095501/1‑93 (MQ=255)
ggTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTgg < 1:6040262/93‑1 (MQ=255)
gTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGc < 1:35296/93‑1 (MQ=255)
tCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAAc < 1:3340656/93‑1 (MQ=255)
tCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAAc < 1:4723444/93‑1 (MQ=255)
tcatcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGaa > 2:164616/1‑93 (MQ=255)
tcatcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGaa < 2:2675452/93‑1 (MQ=255)
tcatcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGaa > 2:4546817/1‑93 (MQ=255)
catcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAc > 2:3203951/1‑93 (MQ=255)
catcTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAc < 1:3871296/93‑1 (MQ=255)
catcCCCAGCCCGCCGAGGATAAGGCGATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGACAAAGCTGGCTAACAGAAc < 2:5480348/93‑1 (MQ=255)
tctcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAccc > 2:5071745/1‑93 (MQ=255)
tctcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAccc > 1:6211889/1‑93 (MQ=255)
tctcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAccc < 1:835230/93‑1 (MQ=255)
tctcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAccc > 1:1792844/1‑93 (MQ=255)
ctcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCcg < 1:5806716/93‑1 (MQ=255)
ctcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCcg < 1:4826472/93‑1 (MQ=255)
tcCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCcgc > 2:2924030/1‑93 (MQ=255)
ccAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCcgcg < 1:5134804/93‑1 (MQ=255)
cAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCgcgc > 2:4205149/1‑93 (MQ=255)
aGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGcc > 1:3190927/1‑93 (MQ=255)
gCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAATCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCa > 2:5449558/1‑93 (MQ=255)
gCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCa > 2:4277509/1‑93 (MQ=255)
ccgccgGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACg < 2:415201/93‑1 (MQ=255)
cgccgGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACgg < 1:236596/93‑1 (MQ=255)
gccgGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACggg < 2:2570661/93‑1 (MQ=255)
gccgGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACggg < 2:2949676/93‑1 (MQ=255)
gccgGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACggg < 1:2078800/93‑1 (MQ=255)
cgGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGggcg > 2:4816408/1‑93 (MQ=255)
gggATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGggcggc > 2:625900/1‑93 (MQ=255)
gATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCtt > 2:881600/1‑93 (MQ=255)
gATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCtt < 2:1240697/93‑1 (MQ=255)
gATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCtt < 2:1422705/93‑1 (MQ=255)
aTAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTc < 2:3750222/93‑1 (MQ=255)
aaTGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCgg > 2:1701820/1‑93 (MQ=255)
tGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgca < 1:5899556/93‑1 (MQ=255)
gCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgcag > 1:3411512/1‑93 (MQ=255)
ccATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgcagc > 1:2949203/1‑93 (MQ=255)
cATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgcagca < 2:2355404/93‑1 (MQ=255)
cATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGgcagca > 2:2253921/1‑93 (MQ=255)
aTTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGcagcag > 1:5017916/1‑93 (MQ=255)
ggCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGctt < 1:3087393/93‑1 (MQ=255)
gCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGcttt > 1:5067959/1‑93 (MQ=255)
cGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTa < 2:1974651/93‑1 (MQ=255)
gatgatGTCACCAACCGCAAGCCCGGCTTTTTTTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAc > 1:1452820/1‑93 (MQ=255)
gatgatGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAc < 2:2852395/93‑1 (MQ=255)
gatgatGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAc < 1:530985/93‑1 (MQ=255)
atgatgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAcc > 1:3635557/1‑93 (MQ=255)
atgatgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAcc > 2:5190737/1‑93 (MQ=255)
tgatgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCg > 1:1370919/1‑93 (MQ=255)
gatgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGAGCCACGGGCGGCTTCGGCAGCAGCTTTACCGt > 2:4522893/1‑93 (MQ=255)
atgTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTc > 2:4508006/1‑93 (MQ=255)
gTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCAc > 1:1688826/1‑93 (MQ=255)
tCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACt < 1:4211051/93‑1 (MQ=255)
cACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACtt < 1:3035768/93‑1 (MQ=255)
cACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACtt > 1:4505313/1‑93 (MQ=255)
aCCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTc > 1:3492443/1‑93 (MQ=255)
ccAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCg > 1:1894980/1‑93 (MQ=255)
ccAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCg < 1:5876830/93‑1 (MQ=255)
aaCCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCggt < 2:4426700/93‑1 (MQ=255)
aaCCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCggt > 2:1441342/1‑93 (MQ=255)
aaCCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCggt < 2:274734/93‑1 (MQ=255)
aCCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCCTCGGCAGCAGCTTTACCGTCACTTCggtg < 2:5788595/93‑1 (MQ=255)
ccGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCggtgg > 1:805094/1‑93 (MQ=255)
ccGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCggtgg > 2:1816247/1‑93 (MQ=255)
gCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCCCTTCGGTGGTc > 2:246293/1‑93 (MQ=255)
gCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTc > 2:4658967/1‑93 (MQ=255)
gCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTc < 2:333229/93‑1 (MQ=255)
|
AAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCAC > NC_000913/3125203‑3125382
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCC > NC_000913/3125201‑3125385
|
ATAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCC < SRR4302533.5174540/94‑1 (MQ=60)
ATAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCC > SRR4302533.628391/1‑94 (MQ=60)
TAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCC < SRR4302533.5027044/94‑1 (MQ=60)
AAAATCTTCCGCTGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCG > SRR4302533.3243980/1‑94 (MQ=60)
AAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCG < SRR4302533.2686402/94‑1 (MQ=60)
AAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCG < SRR4302533.2237195/94‑1 (MQ=60)
AAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCG < SRR4302533.4607473/94‑1 (MQ=60)
AAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCG < SRR4302533.3195264/94‑1 (MQ=60)
AAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCG > SRR4302533.4721304/1‑94 (MQ=60)
AATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGC < SRR4302533.6185579/94‑1 (MQ=60)
ATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCT > SRR4302533.1334326/1‑94 (MQ=60)
TCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTT > SRR4302533.308705/1‑94 (MQ=60)
CTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTT > SRR4302533.2637104/1‑94 (MQ=60)
CTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTT > SRR4302533.4610368/1‑94 (MQ=60)
TCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTT < SRR4302533.4413189/94‑1 (MQ=60)
CGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCT > SRR4302533.5243977/1‑94 (MQ=60)
CGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCT > SRR4302533.2123929/1‑94 (MQ=60)
CGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCT > SRR4302533.4219819/1‑94 (MQ=60)
CCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTAC < SRR4302533.2373906/94‑1 (MQ=60)
CCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTAC < SRR4302533.2092620/94‑1 (MQ=60)
CGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCGCCAACCGCAAGCCCGGCTTTTTCTACC < SRR4302533.5739561/94‑1 (MQ=60)
CGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACC < SRR4302533.1336712/94‑1 (MQ=60)
CGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACC < SRR4302533.5102479/94‑1 (MQ=60)
GCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCG > SRR4302533.4881278/1‑94 (MQ=60)
GCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCG > SRR4302533.2650271/1‑94 (MQ=60)
GCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAG < SRR4302533.3211037/94‑1 (MQ=60)
GCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAG < SRR4302533.1690581/94‑1 (MQ=60)
CGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGT < SRR4302533.5916901/94‑1 (MQ=60)
CGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGT > SRR4302533.782059/1‑94 (MQ=60)
GGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTC > SRR4302533.6096778/1‑94 (MQ=60)
GGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTC > SRR4302533.5099152/1‑94 (MQ=60)
ATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAA > SRR4302533.911694/1‑94 (MQ=60)
TCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAA < SRR4302533.4357854/94‑1 (MQ=60)
CGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAG > SRR4302533.5615426/1‑94 (MQ=60)
CGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAG > SRR4302533.4044904/1‑94 (MQ=60)
CGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAG > SRR4302533.1217547/1‑94 (MQ=60)
CGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAG < SRR4302533.1976162/94‑1 (MQ=60)
GACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACTGCAAGCCCGGCTTTTTCTACCGAGTCAAAGC > SRR4302533.799792/1‑94 (MQ=60)
GACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGC > SRR4302533.2160618/1‑94 (MQ=60)
GACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGC > SRR4302533.3534616/1‑94 (MQ=60)
GACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGC > SRR4302533.3478220/1‑94 (MQ=60)
GACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGC > SRR4302533.260308/1‑94 (MQ=60)
CAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTG > SRR4302533.3667260/1‑94 (MQ=60)
CAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTG < SRR4302533.672237/94‑1 (MQ=60)
CAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTG > SRR4302533.1181101/1‑94 (MQ=60)
CAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTG < SRR4302533.5441566/94‑1 (MQ=60)
AGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGG < SRR4302533.4637970/94‑1 (MQ=60)
AGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGG > SRR4302533.2108405/1‑94 (MQ=60)
GGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGC < SRR4302533.6076864/94‑1 (MQ=60)
GTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCT < SRR4302533.35533/94‑1 (MQ=60)
ATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAAC > SRR4302533.6052672/1‑94 (MQ=60)
TCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACA < SRR4302533.4752082/94‑1 (MQ=60)
TCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACA < SRR4302533.3361303/94‑1 (MQ=60)
CATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGA < SRR4302533.1843461/94‑1 (MQ=60)
CATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGACGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGA > SRR4302533.1394268/1‑94 (MQ=60)
TCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAC < SRR4302533.985060/94‑1 (MQ=60)
CATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACC > SRR4302533.1789107/1‑94 (MQ=60)
CATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACC < SRR4302533.3894924/94‑1 (MQ=60)
ATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCC > SRR4302533.5084959/1‑94 (MQ=60)
ATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCC > SRR4302533.6249140/1‑94 (MQ=60)
ATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCC > SRR4302533.4189159/1‑94 (MQ=60)
ATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCC > SRR4302533.1803750/1‑94 (MQ=60)
ATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCC > SRR4302533.1651328/1‑94 (MQ=60)
TCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCG < SRR4302533.4860093/94‑1 (MQ=60)
TCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCG < SRR4302533.840125/94‑1 (MQ=60)
CTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGC < SRR4302533.3702894/94‑1 (MQ=60)
CTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGC < SRR4302533.5841780/94‑1 (MQ=60)
CTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGC < SRR4302533.4855719/94‑1 (MQ=60)
CCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGC < SRR4302533.5165827/94‑1 (MQ=60)
CCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGC > SRR4302533.4247375/1‑94 (MQ=60)
CAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCC > SRR4302533.3210556/1‑94 (MQ=60)
GCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCAC < SRR4302533.5376687/94‑1 (MQ=60)
CCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACG < SRR4302533.821667/94‑1 (MQ=60)
CCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGG > SRR4302533.2545926/1‑94 (MQ=60)
CGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGG < SRR4302533.238058/94‑1 (MQ=60)
CGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGG > SRR4302533.4767007/1‑94 (MQ=60)
CGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAAACCGCGCCACGGG > SRR4302533.3556987/1‑94 (MQ=60)
GCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGC < SRR4302533.2091592/94‑1 (MQ=60)
CCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCG < SRR4302533.879929/94‑1 (MQ=60)
CCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCG > SRR4302533.1692477/1‑94 (MQ=60)
GGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCT < SRR4302533.1221667/94‑1 (MQ=60)
GGATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTT > SRR4302533.670319/1‑94 (MQ=60)
GATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTC > SRR4302533.5158653/1‑94 (MQ=60)
ATAATGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCG > SRR4302533.4953189/1‑94 (MQ=60)
TGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAG > SRR4302533.3432584/1‑94 (MQ=60)
TGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAG < SRR4302533.5935184/94‑1 (MQ=60)
TGCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAG > SRR4302533.1829816/1‑94 (MQ=60)
GCCATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGC > SRR4302533.2967241/1‑94 (MQ=60)
CATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAG > SRR4302533.5048310/1‑94 (MQ=60)
CATTGGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAG > SRR4302533.1394027/1‑94 (MQ=60)
GGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTT > SRR4302533.5098564/1‑94 (MQ=60)
GGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTT < SRR4302533.3664533/94‑1 (MQ=60)
GGCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTT < SRR4302533.3106375/94‑1 (MQ=60)
GCGATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTA < SRR4302533.702908/94‑1 (MQ=60)
CGATGATGTCACCAACCGCAAGCCCGGCTTTTTTTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTAC > SRR4302533.1461585/1‑94 (MQ=60)
GATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACC < SRR4302533.5868519/94‑1 (MQ=60)
GATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACC > SRR4302533.1214837/1‑94 (MQ=60)
GATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACC < SRR4302533.534143/94‑1 (MQ=60)
GATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACC > SRR4302533.3657912/1‑94 (MQ=60)
GATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACC > SRR4302533.5060566/1‑94 (MQ=60)
ATGATGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCG > SRR4302533.1379158/1‑94 (MQ=60)
TGTCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCAC > SRR4302533.1699059/1‑94 (MQ=60)
TCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTT < SRR4302533.4236522/94‑1 (MQ=60)
TCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTT > SRR4302533.4532603/1‑94 (MQ=60)
TCACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTT > SRR4302533.6003513/1‑94 (MQ=60)
CACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTC < SRR4302533.3054344/94‑1 (MQ=60)
CACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTC > SRR4302533.3513979/1‑94 (MQ=60)
ACCACCCGCAAGCCCGGCTGTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCG < SRR4302533.2991830/94‑1 (MQ=60)
ACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACNCGCGCCACGGGCGGNTTCNNNANCAGCTTTACCGNNNNTNCG > SRR4302533.5523998/1‑94 (MQ=60)
ACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCG > SRR4302533.2709844/1‑94 (MQ=60)
ACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCG < SRR4302533.6241030/94‑1 (MQ=60)
ACCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCG > SRR4302533.1906547/1‑94 (MQ=60)
CCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAGCAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGG > SRR4302533.3394483/1‑94 (MQ=60)
CCAACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGG < SRR4302533.5912356/94‑1 (MQ=60)
AACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTG < SRR4302533.2633084/94‑1 (MQ=60)
ACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGG < SRR4302533.957770/94‑1 (MQ=60)
ACCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGG > SRR4302533.809825/1‑94 (MQ=60)
CCGCAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGT < SRR4302533.2918880/94‑1 (MQ=60)
CAAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCAC < SRR4302533.3557847/94‑1 (MQ=60)
AAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCACG < SRR4302533.4043837/94‑1 (MQ=60)
AAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCACG > SRR4302533.2627948/1‑94 (MQ=60)
AAGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCACG < SRR4302533.740390/94‑1 (MQ=60)
AGCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTGACGC > SRR4302533.1402456/1‑94 (MQ=60)
GCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCACGCC < SRR4302533.5168145/94‑1 (MQ=60)
GCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCACGCC > SRR4302533.4696010/1‑94 (MQ=60)
GCCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGCTTTACCGTCACTTCGGTGGTCACGCC < SRR4302533.4756878/94‑1 (MQ=60)
|
ATAAAATCTTCCGCCGCGCGGATCGACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCC > NC_000913/3125201‑3125385
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
