Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,393,906	T→C	intergenic (‑4243/+57)	tldD ← / ← cafA	TldD/CafA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,393,906	0	T	C	99.7%	1192.9 / ‑5.0	364	intergenic (‑4243/+57)	tldD/cafA	TldD/CafA
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (179/184); total (179/185)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.90e-01

Only 100 of 373 total aligned reads displayed.

CGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTT  >  NC_000913/3393816‑3393995

 gCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGt                                                                                        <  2:7174428/93‑1 (MQ=255)

  cAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTc                                                                                       <  1:1264951/93‑1 (MQ=255)

  cAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTc                                                                                       <  2:2916320/93‑1 (MQ=255)

  cAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTc                                                                                       >  1:2912112/1‑93 (MQ=255)

   aGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCt                                                                                      <  2:3479629/93‑1 (MQ=255)

         cTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTaaa                                                                                >  1:1061044/1‑93 (MQ=255)

          tAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTaaaa                                                                               >  1:5839862/1‑93 (MQ=255)

          tAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTaaaa                                                                               >  2:4718519/1‑93 (MQ=255)

          tAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTaaaa                                                                               >  1:347992/1‑93 (MQ=255)

                gcagGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGa                                                                         <  2:10034536/93‑1 (MQ=255)

                gcagGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGa                                                                         <  2:2813320/93‑1 (MQ=255)

                 cagGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGAc                                                                        >  1:2200804/1‑93 (MQ=255)

                   gggCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTc                                                                      >  1:5162011/1‑93 (MQ=255)

                   gggCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTc                                                                      <  2:1363932/93‑1 (MQ=255)

                   gggCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTc                                                                      >  2:792437/1‑93 (MQ=255)

                   gggCAGAGAACACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTc                                                                      <  1:7064337/93‑1 (MQ=255)

                     gCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACCCCCTGTCCGCTGAAAATCTGACTCaa                                                                    >  1:3312811/1‑93 (MQ=255)

                      cAGCGATCACAACTAGTGCGGCTCTAGTAAGCAGTAAAATCTCCTTCAATCGCCTCACCCGTCACGCCCTGTCTGCTTAAAATGTGACTCaaa                                                                   >  2:8950305/1‑93 (MQ=255)

                        gCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaaaaa                                                                 <  1:8311622/93‑1 (MQ=255)

                        gCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaaaaa                                                                 <  2:5797418/93‑1 (MQ=255)

                        gCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaaaaa                                                                 <  1:750395/93‑1 (MQ=255)

                        gCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaaaaa                                                                 <  2:6489561/93‑1 (MQ=255)

                         cGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaacaac                                                                >  2:1825497/1‑93 (MQ=255)

                         cGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAc                                                                >  1:9367632/1‑93 (MQ=255)

                          gATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAcc                                                               >  1:3714755/1‑93 (MQ=255)

                          gATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAcc                                                               <  2:3732572/93‑1 (MQ=255)

                           aTCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAccc                                                              <  2:9694520/93‑1 (MQ=255)

                           aTCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAccc                                                              >  1:469730/1‑93 (MQ=255)

                            tCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCt                                                             >  2:6827628/1‑93 (MQ=255)

                            tCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCt                                                             <  1:8785614/93‑1 (MQ=255)

                            tCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCt                                                             <  1:3094014/93‑1 (MQ=255)

                             cacaACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCtt                                                            <  2:5758981/93‑1 (MQ=255)

                              acaACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCttt                                                           <  2:2602707/93‑1 (MQ=255)

                               caACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTg                                                          >  1:3999180/1‑93 (MQ=255)

                                aaCGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGc                                                         >  1:641927/1‑93 (MQ=255)

                                aaCGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGc                                                         <  2:6744760/93‑1 (MQ=255)

                                 aCGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGcc                                                        <  1:9896474/93‑1 (MQ=255)

                                    aGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGa                                                     <  2:1137234/93‑1 (MQ=255)

                                    aGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGa                                                     >  1:8116631/1‑93 (MQ=255)

                                    aGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGa                                                     <  2:6392653/93‑1 (MQ=255)

                                     gcgcGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGAt                                                    <  2:1266769/93‑1 (MQ=255)

                                     gcgcGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGAt                                                    <  1:8599902/93‑1 (MQ=255)

                                      cgcgGCGCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATg                                                   <  1:8495669/93‑1 (MQ=255)

                                       gcgGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATgg                                                  <  2:9827206/93‑1 (MQ=255)

                                         ggCTCCAGTAAGCAGTATAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATggcg                                                >  2:8341671/1‑93 (MQ=255)

                                         ggCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATggcg                                                >  2:3163211/1‑93 (MQ=255)

                                          gCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATggcgg                                               >  2:506535/1‑93 (MQ=255)

                                           cTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATggcggc                                              >  2:803015/1‑93 (MQ=255)

                                            tCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGcc                                             >  2:9352851/1‑93 (MQ=255)

                                             ccAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGccc                                            >  2:9552032/1‑93 (MQ=255)

                                              cAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCa                                           >  2:7724043/1‑93 (MQ=255)

                                              cAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCa                                           >  2:2213344/1‑93 (MQ=255)

                                                gTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGc                                         >  1:1728721/1‑93 (MQ=255)

                                                   aGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATc                                      >  1:4252383/1‑93 (MQ=255)

                                                     cAGTAAAAGCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAACCCCTTTGCCGGATGGCGGCCCAGCATCTg                                    <  1:5749216/93‑1 (MQ=255)

                                                      aGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGt                                   >  2:5510904/1‑93 (MQ=255)

                                                      aGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGt                                   >  2:5284497/1‑93 (MQ=255)

                                                      aGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGt                                   <  2:8155546/93‑1 (MQ=255)

                                                       gTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGtt                                  <  1:6892123/93‑1 (MQ=255)

                                                       gTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGtt                                  >  1:8197836/1‑93 (MQ=255)

                                                       gTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGtt                                  <  1:3891275/93‑1 (MQ=255)

                                                       gTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGtt                                  >  2:3972289/1‑93 (MQ=255)

                                                       gTAAAAACCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGtt                                  <  1:1411465/93‑1 (MQ=255)

                                                        tAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGttt                                 >  1:5592069/1‑93 (MQ=255)

                                                        tAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGttt                                 >  1:6224662/1‑93 (MQ=255)

                                                         aaaaTCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTa                                >  2:7504195/1‑93 (MQ=255)

                                                            aTCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAcat                             <  1:2643757/93‑1 (MQ=255)

                                                             tCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAcatc                            >  1:2462481/1‑93 (MQ=255)

                                                              ccccGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAcatca                           <  1:9522852/93‑1 (MQ=255)

                                                              ccccGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAcatca                           <  2:3034559/93‑1 (MQ=255)

                                                              ccccGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAcatca                           <  1:7659653/93‑1 (MQ=255)

                                                                 cGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTa                        <  2:7637610/93‑1 (MQ=255)

                                                                 cGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTa                        >  2:9764967/1‑93 (MQ=255)

                                                                      aTCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTacgacg                   >  1:7773807/1‑93 (MQ=255)

                                                                       tCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGTCCAGCATCTGTTTACATCATTACGAAGt                  >  1:6345123/1‑93 (MQ=255)

                                                                       tCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGt                  <  1:8836429/93‑1 (MQ=255)

                                                                        cGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATTGCGGCCCAGCATCTGTTTACATCATTACGACGTc                 <  1:7323061/93‑1 (MQ=255)

                                                                        cGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTc                 <  2:8487895/93‑1 (MQ=255)

                                                                        cGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTc                 <  1:5289472/93‑1 (MQ=255)

                                                                         gCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCa                >  2:6955765/1‑93 (MQ=255)

                                                                          ccTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCaa               <  1:9766344/93‑1 (MQ=255)

                                                                          ccTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCaa               >  1:5046184/1‑93 (MQ=255)

                                                                           cTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCaaa              <  2:4618629/93‑1 (MQ=255)

                                                                           cTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCaaa              >  1:8222659/1‑93 (MQ=255)

                                                                            tCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAGCCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAc             <  1:156711/93‑1 (MQ=255)

                                                                            tCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAc             <  2:1616568/93‑1 (MQ=255)

                                                                               cccGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGc          >  2:5413922/1‑93 (MQ=255)

                                                                                ccGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCt         >  2:3257137/1‑93 (MQ=255)

                                                                                  gTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTcc       <  1:3035589/93‑1 (MQ=255)

                                                                                  gTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTcc       <  1:1904636/93‑1 (MQ=255)

                                                                                  gTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTcc       >  2:2112266/1‑93 (MQ=255)

                                                                                   tCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCt      >  1:432341/1‑93 (MQ=255)

                                                                                    cACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTg     >  2:448875/1‑93 (MQ=255)

                                                                                    cACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTg     <  1:912756/93‑1 (MQ=255)

                                                                                     aCTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTgg    <  1:1233927/93‑1 (MQ=255)

                                                                                     aCTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTgg    >  1:80084/1‑93 (MQ=255)

                                                                                     aCTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTgg    >  2:9163315/1‑93 (MQ=255)

                                                                                     aCTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTgg    >  1:5999580/1‑93 (MQ=255)

                                                                                      cTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGt   >  2:3370192/1‑93 (MQ=255)

                                                                                       tCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGtt  >  2:6215236/1‑93 (MQ=255)

CGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTT  >  NC_000913/3393816‑3393995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 206 total aligned reads displayed.

ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATA  >  NC_000913/3393813‑3393998

ATACGCAGGCCGCTAACCCGCAGGGCAGCGATCACAACGAGCGCAGCTCCAGTAAGCAGTAAAATCACCGCCAATCGCCTCACCCGTCACTCCC                                                                                              >  SRR4302540.801145/1‑94 (MQ=60)

ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTACAATCCCCGGCAATCGCCTCACCCGTCACTCCC                                                                                              >  SRR4302540.4528488/1‑94 (MQ=60)

ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCC                                                                                              >  SRR4302540.10005535/1‑94 (MQ=60)

ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCC                                                                                              >  SRR4302540.5640803/1‑94 (MQ=60)

ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCC                                                                                              >  SRR4302540.7660865/1‑94 (MQ=60)

ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCC                                                                                              >  SRR4302540.4661340/1‑94 (MQ=60)

ATACGCAGGCCGCTAACCAGCAGGGCAGCGATAACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCC                                                                                              >  SRR4302540.9369271/1‑94 (MQ=60)

  ACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTG                                                                                            >  SRR4302540.3707354/1‑94 (MQ=60)

  ACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTG                                                                                            >  SRR4302540.3803723/1‑94 (MQ=60)

  ACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTG                                                                                            <  SRR4302540.7981501/94‑1 (MQ=60)

  ACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTG                                                                                            <  SRR4302540.6952524/94‑1 (MQ=60)

    GCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTC                                                                                          >  SRR4302540.6812814/1‑94 (MQ=60)

    GCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTC                                                                                          >  SRR4302540.2943949/1‑94 (MQ=60)

     CAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCT                                                                                         <  SRR4302540.2952434/94‑1 (MQ=60)

     CAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCT                                                                                         <  SRR4302540.1277954/94‑1 (MQ=60)

        GCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCT                                                                                      <  SRR4302540.3382860/94‑1 (MQ=60)

        GCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCT                                                                                      <  SRR4302540.6071554/94‑1 (MQ=60)

         CCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTA                                                                                     >  SRR4302540.4657880/1‑94 (MQ=60)

          CGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAA                                                                                    <  SRR4302540.4152473/94‑1 (MQ=60)

           GCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAA                                                                                   >  SRR4302540.8569362/1‑94 (MQ=60)

           GCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAA                                                                                   >  SRR4302540.320897/1‑94 (MQ=60)

           GCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAA                                                                                   >  SRR4302540.6389896/1‑94 (MQ=60)

           GCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAA                                                                                   >  SRR4302540.1071845/1‑94 (MQ=60)

           GCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAA                                                                                   >  SRR4302540.1071843/1‑94 (MQ=60)

            CTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAA                                                                                  >  SRR4302540.5904442/1‑94 (MQ=60)

            CTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAA                                                                                  >  SRR4302540.5904441/1‑94 (MQ=60)

            CTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAA                                                                                  >  SRR4302540.351535/1‑94 (MQ=60)

             TAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAA                                                                                 >  SRR4302540.8547125/1‑94 (MQ=60)

              AACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAAT                                                                                >  SRR4302540.6164820/1‑94 (MQ=60)

              AACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAAT                                                                                <  SRR4302540.3860382/94‑1 (MQ=60)

              AACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAAT                                                                                <  SRR4302540.8366732/94‑1 (MQ=60)

               ACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATG                                                                               >  SRR4302540.435325/1‑94 (MQ=60)

               ACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATG                                                                               >  SRR4302540.3092392/1‑94 (MQ=60)

               ACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATG                                                                               >  SRR4302540.6313189/1‑94 (MQ=60)

               ACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATG                                                                               <  SRR4302540.8825293/94‑1 (MQ=60)

                cccgcaggcccgccaaCACAACGAGCGCGGCTCCAGTAAGCAGTAACACCCCCGGCAATCGCCTCTCCCGTCGCTCCCTGTCTGCTAAAAATGT                                                                              <  SRR4302540.1966848/78‑1 (MQ=60)

                CCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGT                                                                              <  SRR4302540.7081063/94‑1 (MQ=60)

                 CAGCAGGACAGCGATCACAACGAGCGCGGCTCCACTACGCAGTAAAATCGCTGGCGATCGGCTCTCGCGTCCCACCCTGTCTGCTAAAAATGTG                                                                             <  SRR4302540.6079401/94‑1 (MQ=23)

                  AGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGA                                                                            >  SRR4302540.5525622/1‑94 (MQ=60)

                   GCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGAC                                                                           >  SRR4302540.2224573/1‑94 (MQ=60)

                   GCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGAC                                                                           <  SRR4302540.2738874/94‑1 (MQ=60)

                   GCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGAC                                                                           <  SRR4302540.1128808/94‑1 (MQ=60)

                     AGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTC                                                                         >  SRR4302540.7705417/1‑94 (MQ=60)

                     AGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTC                                                                         >  SRR4302540.2985924/1‑94 (MQ=60)

                     AGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTC                                                                         >  SRR4302540.5218129/1‑94 (MQ=60)

                      GGGCAGAGAACACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA                                                                        <  SRR4302540.7142906/94‑1 (MQ=60)

                       GGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAA                                                                       <  SRR4302540.1931279/94‑1 (MQ=60)

                       GGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAA                                                                       >  SRR4302540.3349110/1‑94 (MQ=60)

                       GGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACCCCCTGTCCGCTGAAAATCTGACTCAA                                                                       >  SRR4302540.3349109/1‑94 (MQ=60)

                        GCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAA                                                                      >  SRR4302540.2831396/1‑94 (MQ=60)

                         CAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAA                                                                     >  SRR4302540.1379181/1‑94 (MQ=60)

                          AGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAA                                                                    >  SRR4302540.4173376/1‑94 (MQ=60)

                          AGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAA                                                                    <  SRR4302540.532063/94‑1 (MQ=60)

                           GCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAC                                                                   <  SRR4302540.7297686/94‑1 (MQ=60)

                           GCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAC                                                                   >  SRR4302540.4335472/1‑94 (MQ=60)

                           GCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAC                                                                   <  SRR4302540.3453143/94‑1 (MQ=60)

                           GCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAC                                                                   >  SRR4302540.9479170/1‑94 (MQ=60)

                           GCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAC                                                                   <  SRR4302540.758384/94‑1 (MQ=60)

                           GCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAC                                                                   <  SRR4302540.2597143/94‑1 (MQ=60)

                           GCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAC                                                                   <  SRR4302540.8408107/94‑1 (MQ=60)

                            CGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCCCCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACC                                                                  <  SRR4302540.635291/94‑1 (MQ=60)

                            CGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACC                                                                  >  SRR4302540.3755290/1‑94 (MQ=60)

                             GATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCC                                                                 >  SRR4302540.474758/1‑94 (MQ=60)

                              ATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCT                                                                >  SRR4302540.9533187/1‑94 (MQ=60)

                              ATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCT                                                                <  SRR4302540.1682631/94‑1 (MQ=60)

                               TCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTT                                                               <  SRR4302540.3127937/94‑1 (MQ=60)

                               TCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTT                                                               <  SRR4302540.8887294/94‑1 (MQ=60)

                               TCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTT                                                               <  SRR4302540.4628393/94‑1 (MQ=60)

                                CACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTT                                                              <  SRR4302540.5861713/94‑1 (MQ=60)

                                CACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTT                                                              <  SRR4302540.4728632/94‑1 (MQ=60)

                                CACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTT                                                              <  SRR4302540.1918505/94‑1 (MQ=60)

                                 ACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTG                                                             <  SRR4302540.2040459/94‑1 (MQ=60)

                                 ACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTG                                                             >  SRR4302540.3259793/1‑94 (MQ=60)

                                 ACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTG                                                             <  SRR4302540.6449987/94‑1 (MQ=60)

                                 ACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTG                                                             >  SRR4302540.4042219/1‑94 (MQ=60)

                                  CAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGC                                                            >  SRR4302540.648767/1‑94 (MQ=60)

                                  CAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGC                                                            >  SRR4302540.7930429/1‑94 (MQ=60)

                                  CAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGC                                                            >  SRR4302540.13254/1‑94 (MQ=60)

                                  CAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGC                                                            <  SRR4302540.1920091/94‑1 (MQ=60)

                                    ACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCG                                                          <  SRR4302540.10012049/94‑1 (MQ=60)

                                     CGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGG                                                         >  SRR4302540.15046/1‑94 (MQ=60)

                                     CGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGG                                                         <  SRR4302540.8872836/94‑1 (MQ=60)

                                      GAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGA                                                        >  SRR4302540.8210827/1‑94 (MQ=60)

                                      GAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCCCCTCCCCCGTCACTCCTTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGA                                                        <  SRR4302540.9323059/94‑1 (MQ=60)

                                       AGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGAT                                                       <  SRR4302540.3810665/94‑1 (MQ=60)

                                       AGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGAT                                                       <  SRR4302540.1356929/94‑1 (MQ=60)

                                       AGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGAT                                                       <  SRR4302540.7877540/94‑1 (MQ=60)

                                        GCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATG                                                      <  SRR4302540.8699860/94‑1 (MQ=60)

                                         CGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGG                                                     <  SRR4302540.9940569/94‑1 (MQ=60)

                                         CGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGG                                                     >  SRR4302540.9410114/1‑94 (MQ=60)

                                         CGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGG                                                     <  SRR4302540.7074976/94‑1 (MQ=60)

                                         CGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGG                                                     <  SRR4302540.8594390/94‑1 (MQ=60)

                                         CGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGG                                                     <  SRR4302540.5192754/94‑1 (MQ=60)

                                         CGCGGCGCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGG                                                     <  SRR4302540.8594389/94‑1 (MQ=60)

                                          GCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGC                                                    <  SRR4302540.1260216/94‑1 (MQ=60)

                                          GCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGC                                                    <  SRR4302540.584117/94‑1 (MQ=60)

                                          GCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGC                                                    <  SRR4302540.1260215/94‑1 (MQ=60)

                                           CGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCG                                                   <  SRR4302540.8927531/94‑1 (MQ=60)

                                           CGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCG                                                   <  SRR4302540.5521133/94‑1 (MQ=60)

                                           CGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCG                                                   >  SRR4302540.2636311/1‑94 (MQ=60)

                                           CGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCG                                                   >  SRR4302540.2769316/1‑94 (MQ=60)

                                           CGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCG                                                   <  SRR4302540.5001344/94‑1 (MQ=60)

                                           CGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCG                                                   <  SRR4302540.5001345/94‑1 (MQ=60)

                                           CGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCG                                                   >  SRR4302540.510567/1‑94 (MQ=60)

                                            GGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGG                                                  <  SRR4302540.3610576/94‑1 (MQ=60)

                                            GGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGG                                                  >  SRR4302540.8597618/1‑94 (MQ=60)

                                             GCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGC                                                 >  SRR4302540.4036146/1‑94 (MQ=60)

                                             GCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATCGCGGC                                                 >  SRR4302540.9923693/1‑94 (MQ=60)

                                              CTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCC                                                >  SRR4302540.933386/1‑94 (MQ=60)

                                              CTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCC                                                <  SRR4302540.6235437/94‑1 (MQ=60)

                                                CCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCA                                              <  SRR4302540.29579/94‑1 (MQ=60)

                                                 CAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAG                                             >  SRR4302540.10098978/1‑94 (MQ=60)

                                                 CAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAG                                             <  SRR4302540.8308152/94‑1 (MQ=60)

                                                  AGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGC                                            >  SRR4302540.1747378/1‑94 (MQ=60)

                                                   GTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCA                                           >  SRR4302540.8974252/1‑94 (MQ=60)

                                                    TAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCAT                                          >  SRR4302540.8680066/1‑94 (MQ=60)

                                                     AAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATC                                         >  SRR4302540.4298644/1‑94 (MQ=60)

                                                      AGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCT                                        <  SRR4302540.8298825/94‑1 (MQ=60)

                                                        CAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACTCTTTGCCGGCTGGCGGCCCAGCATCTGT                                      >  SRR4302540.2015308/1‑94 (MQ=60)

                                                        CAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGT                                      >  SRR4302540.10047989/1‑94 (MQ=60)

                                                        CAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGT                                      >  SRR4302540.7177611/1‑94 (MQ=60)

                                                        CAGTAAAAGCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAACCCCTTTGCCGGATGGCGGCCCAGCATCTGT                                      <  SRR4302540.5812654/94‑1 (MQ=60)

                                                         AGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTT                                     >  SRR4302540.7696156/1‑94 (MQ=60)

                                                         AGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTT                                     >  SRR4302540.8293106/1‑94 (MQ=60)

                                                         AGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTT                                     >  SRR4302540.1544858/1‑94 (MQ=60)

                                                          GTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTT                                    <  SRR4302540.6968580/94‑1 (MQ=60)

                                                          GTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTT                                    <  SRR4302540.7756077/94‑1 (MQ=60)

                                                          GTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTT                                    <  SRR4302540.3933525/94‑1 (MQ=60)

                                                          GTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTT                                    >  SRR4302540.6293893/1‑94 (MQ=60)

                                                          GTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTT                                    <  SRR4302540.7756078/94‑1 (MQ=60)

                                                          GTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTT                                    >  SRR4302540.5653601/1‑94 (MQ=60)

                                                          GTAAAAACCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTT                                    <  SRR4302540.1426688/94‑1 (MQ=60)

                                                            AAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAC                                  >  SRR4302540.4862078/1‑94 (MQ=60)

                                                              AATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACAT                                >  SRR4302540.8916487/1‑94 (MQ=60)

                                                               ATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATC                               <  SRR4302540.2672439/94‑1 (MQ=60)

                                                               ATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATC                               >  SRR4302540.2488983/1‑94 (MQ=60)

                                                               ATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCATTGCCGGATGGCGGCCCAGCATCTGTTTACATC                               >  SRR4302540.9831430/1‑94 (MQ=60)

                                                                 CCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCAT                             <  SRR4302540.7745901/94‑1 (MQ=60)

                                                                 CCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCAT                             >  SRR4302540.6013291/1‑94 (MQ=60)

                                                                 CCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCAT                             <  SRR4302540.9635614/94‑1 (MQ=60)

                                                                 CCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCAT                             <  SRR4302540.9635615/94‑1 (MQ=60)

                                                                  CCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATT                            >  SRR4302540.9529636/1‑94 (MQ=60)

                                                                   CCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTA                           <  SRR4302540.9756594/94‑1 (MQ=60)

                                                                    CGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTAC                          <  SRR4302540.9162034/94‑1 (MQ=60)

                                                                       CAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGAC                       >  SRR4302540.2230069/1‑94 (MQ=60)

                                                                       CAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGAC                       <  SRR4302540.7859118/94‑1 (MQ=60)

                                                                       CAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGAC                       >  SRR4302540.8199460/1‑94 (MQ=60)

                                                                        AATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACAagcgctagatc                      >  SRR4302540.6834175/1‑83 (MQ=60)

                                                                        AATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACG                      <  SRR4302540.8149596/94‑1 (MQ=60)

                                                                        AATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACG                      >  SRR4302540.7560145/1‑94 (MQ=60)

                                                                        AATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACG                      >  SRR4302540.7864684/1‑94 (MQ=60)

                                                                         ATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGTCCAGCATCTGTTTACATCATTACGAAGT                     >  SRR4302540.6415778/1‑94 (MQ=60)

                                                                         ATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGT                     <  SRR4302540.160538/94‑1 (MQ=60)

                                                                          TCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTC                    <  SRR4302540.8938633/94‑1 (MQ=60)

                                                                           CGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATTGCGGCCCAGCATCTGTTTACATCATTACGACGTCA                   <  SRR4302540.7404848/94‑1 (MQ=60)

                                                                           CGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCA                   <  SRR4302540.5347287/94‑1 (MQ=60)

                                                                           CGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCA                   <  SRR4302540.900664/94‑1 (MQ=60)

                                                                           CGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCA                   >  SRR4302540.4296983/1‑94 (MQ=60)

                                                                            GCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAA                  >  SRR4302540.5677864/1‑94 (MQ=60)

                                                                            GCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAA                  >  SRR4302540.5100757/1‑94 (MQ=60)

                                                                            GCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAA                  >  SRR4302540.6488383/1‑94 (MQ=60)

                                                                            GCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAA                  >  SRR4302540.7608582/1‑94 (MQ=60)

                                                                             CCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTGCATCATTACGACGTCAAA                 <  SRR4302540.7251619/94‑1 (MQ=60)

                                                                             CCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAA                 <  SRR4302540.9880875/94‑1 (MQ=60)

                                                                             CCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAA                 >  SRR4302540.8318242/1‑94 (MQ=60)

                                                                             CCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAA                 >  SRR4302540.8318243/1‑94 (MQ=60)

                                                                              CTCACCCGTCGCTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAC                <  SRR4302540.7495426/94‑1 (MQ=60)

                                                                              CTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAC                >  SRR4302540.823317/1‑94 (MQ=60)

                                                                              CTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAC                <  SRR4302540.7063636/94‑1 (MQ=60)

                                                                              CTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAC                <  SRR4302540.3075590/94‑1 (MQ=60)

                                                                              CTCACCCGTCACTCCCTGTCTGCTAAAAATGGGGCTCAAAAACCCTTTGCCGGATGGCGGCCCAGCAGCTGTTTACATCATTGCGACGTCcaat                >  SRR4302540.823318/1‑90 (MQ=60)

                                                                               cccCCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACT               <  SRR4302540.127095/91‑1 (MQ=60)

                                                                               TCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAGCCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACT               <  SRR4302540.158301/94‑1 (MQ=60)

                                                                               TCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACT               <  SRR4302540.3955315/94‑1 (MQ=60)

                                                                                   CCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTC           >  SRR4302540.3176262/1‑94 (MQ=60)

                                                                                    CGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCC          <  SRR4302540.5164503/94‑1 (MQ=60)

                                                                                    CGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCC          >  SRR4302540.8707826/1‑94 (MQ=60)

                                                                                     GTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCT         <  SRR4302540.3068905/94‑1 (MQ=60)

                                                                                     GTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCT         >  SRR4302540.8300423/1‑94 (MQ=60)

                                                                                     GTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCT         >  SRR4302540.436913/1‑94 (MQ=60)

                                                                                     GTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCT         <  SRR4302540.1925453/94‑1 (MQ=60)

                                                                                     GTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCT         >  SRR4302540.6809048/1‑94 (MQ=60)

                                                                                       CACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGG       <  SRR4302540.10039009/94‑1 (MQ=60)

                                                                                       CACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGG       <  SRR4302540.529642/94‑1 (MQ=60)

                                                                                       CACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGG       >  SRR4302540.80921/1‑94 (MQ=60)

                                                                                       CACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGG       >  SRR4302540.2592055/1‑94 (MQ=60)

                                                                                       CACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGG       >  SRR4302540.6066076/1‑94 (MQ=60)

                                                                                       CACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGG       <  SRR4302540.922414/94‑1 (MQ=60)

                                                                                        ACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGT      >  SRR4302540.6031383/1‑94 (MQ=60)

                                                                                        ACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGT      <  SRR4302540.1246529/94‑1 (MQ=60)

                                                                                         CTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTT     >  SRR4302540.176363/1‑94 (MQ=60)

                                                                                         CTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTT     >  SRR4302540.1654252/1‑94 (MQ=60)

                                                                                         CTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTT     <  SRR4302540.5752677/94‑1 (MQ=60)

                                                                                         CTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTT     <  SRR4302540.7865405/94‑1 (MQ=60)

                                                                                          TCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTA    >  SRR4302540.86319/1‑94 (MQ=60)

                                                                                          TCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTA    <  SRR4302540.5432063/94‑1 (MQ=60)

                                                                                           CCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTAT   <  SRR4302540.5009811/94‑1 (MQ=60)

                                                                                            CCTGTCTGCTAAAAATGTGACTCAAAAGCCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATA  <  SRR4302540.658976/94‑1 (MQ=60)

                                                                                            CCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATA  <  SRR4302540.5928967/94‑1 (MQ=60)

                                                                                            CCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATA  <  SRR4302540.3863365/94‑1 (MQ=60)

ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATA  >  NC_000913/3393813‑3393998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`