Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,393,906	T→C	intergenic (‑4243/+57)	tldD ← / ← cafA	TldD/CafA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,393,906	0	T	C	100.0%	755.0 / NA	230	intergenic (‑4243/+57)	tldD/cafA	TldD/CafA
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (117/113); total (117/113)

Only 100 of 235 total aligned reads displayed.

CGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTT  >  NC_000913/3393816‑3393995

cGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTg                                                                                         <  2:1006885/93‑1 (MQ=255)

cGCAGGCCGCGAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTg                                                                                         <  2:5342989/93‑1 (MQ=255)

  cAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTc                                                                                       >  1:5723280/1‑93 (MQ=255)

  cAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTc                                                                                       >  2:1843098/1‑93 (MQ=255)

  cAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTc                                                                                       <  1:4833471/93‑1 (MQ=255)

      ccGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCt                                                                                   <  2:2271736/93‑1 (MQ=255)

      ccGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCt                                                                                   >  2:1719089/1‑93 (MQ=255)

        ccTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCTCCCGTCACTCCCTGTCTGCTaa                                                                                 <  2:4750042/92‑1 (MQ=255)

         cTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTaaa                                                                                >  2:6179672/1‑93 (MQ=255)

           aaCCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTaaaaa                                                                              >  2:2454687/1‑93 (MQ=255)

           aaCCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTaaaaa                                                                              >  1:3821571/1‑93 (MQ=255)

            aCCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAAt                                                                             >  1:1820321/1‑93 (MQ=255)

             ccAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAAtg                                                                            <  1:2450656/93‑1 (MQ=255)

              cagcagGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAAtgt                                                                           >  2:1993845/1‑93 (MQ=255)

              cagcagGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAAtgt                                                                           <  2:388772/93‑1 (MQ=255)

              cagcagGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAAtgt                                                                           <  1:3647549/93‑1 (MQ=255)

               agcagGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAAtgtg                                                                          >  1:1204908/1‑93 (MQ=255)

                gcagGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGa                                                                         >  1:3767005/1‑93 (MQ=255)

                gcagGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGa                                                                         <  2:1175670/93‑1 (MQ=255)

                 cagGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGAc                                                                        <  2:662988/93‑1 (MQ=255)

                  agGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACt                                                                       >  1:4762944/1‑93 (MQ=255)

                   gggCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTc                                                                      >  1:6021533/1‑93 (MQ=255)

                   gggCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTc                                                                      >  2:3665323/1‑93 (MQ=255)

                   gggCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTc                                                                      >  1:61782/1‑93 (MQ=255)

                   gggCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTc                                                                      <  2:4912426/93‑1 (MQ=255)

                       aGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaaaa                                                                  <  2:1275774/93‑1 (MQ=255)

                       aGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaaaa                                                                  >  1:799069/1‑93 (MQ=255)

                       aGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaaaa                                                                  >  1:2870732/1‑93 (MQ=255)

                        gCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaaaaa                                                                 >  1:3133230/1‑93 (MQ=255)

                        gCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaaaaa                                                                 >  2:3046320/1‑93 (MQ=255)

                          gATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAcc                                                               <  2:4777315/93‑1 (MQ=255)

                           aTCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAccc                                                              >  2:2856708/1‑93 (MQ=255)

                             cacaACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAACAATGTGACTCAAAAACCCtt                                                            >  2:4066883/1‑93 (MQ=255)

                             cacaACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCtt                                                            >  2:4632555/1‑93 (MQ=255)

                               caACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTg                                                          <  1:5050932/93‑1 (MQ=255)

                                aaCGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCTTTCACTCCCTGTCTGCTAAAAATGAGACTCAAAAACCCTTTGc                                                         >  1:5439978/1‑93 (MQ=255)

                                aaCGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGc                                                         <  1:4146353/93‑1 (MQ=255)

                                    aGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGa                                                     <  2:1954553/93‑1 (MQ=255)

                                    aGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGa                                                     <  2:3672780/93‑1 (MQ=255)

                                      cgcgGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATg                                                   <  2:4141253/93‑1 (MQ=255)

                                       gcgTCTCCAGTAAGCAGTAAAATCCACGGCAATCGCCTCCCCCGTCGCTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATgg                                                  <  2:5222194/93‑1 (MQ=255)

                                       gcgGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATgg                                                  >  1:5648204/1‑93 (MQ=255)

                                         ggCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATggcg                                                <  2:4890032/93‑1 (MQ=255)

                                         ggCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATggcg                                                >  1:1977513/1‑93 (MQ=255)

                                           cTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATggcggc                                              <  2:743561/93‑1 (MQ=255)

                                           cTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATggcggc                                              >  1:2144990/1‑93 (MQ=255)

                                             ccAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGccc                                            <  1:138050/93‑1 (MQ=255)

                                              cAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCa                                           >  1:6078969/1‑93 (MQ=255)

                                              cAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCa                                           >  2:404533/1‑93 (MQ=255)

                                              cAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCa                                           <  2:2194125/93‑1 (MQ=255)

                                              cAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCCGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCa                                           <  2:6131291/93‑1 (MQ=255)

                                               aGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAg                                          >  2:2760569/1‑93 (MQ=255)

                                                gTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGc                                         <  1:3862085/93‑1 (MQ=255)

                                                gTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGc                                         >  2:2063107/1‑93 (MQ=255)

                                                gTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTCTGCCGGATGGCGGCCCAGc                                         >  1:2196269/1‑93 (MQ=255)

                                                 tAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCa                                        >  1:5540207/1‑93 (MQ=255)

                                                 tAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCa                                        >  1:5951070/1‑93 (MQ=255)

                                                  aaGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGTCCAGCAt                                       >  2:3488381/1‑93 (MQ=255)

                                                   aGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATc                                      <  2:1632556/93‑1 (MQ=255)

                                                     cAGTAAAATCCCCGCCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTg                                    <  2:122316/93‑1 (MQ=255)

                                                      aGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGt                                   >  2:3766053/1‑93 (MQ=255)

                                                       gTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGtt                                  <  1:3275530/93‑1 (MQ=255)

                                                        tAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGttt                                 <  2:5876504/93‑1 (MQ=255)

                                                        tAAAACCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGttt                                 <  2:4090398/93‑1 (MQ=255)

                                                         aaaaTCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTa                                <  1:3444505/93‑1 (MQ=255)

                                                            aTCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAcat                             >  2:5401084/1‑93 (MQ=255)

                                                              ccccGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAcatca                           <  1:2098356/93‑1 (MQ=255)

                                                               cccGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAcatcat                          >  2:3910919/1‑93 (MQ=255)

                                                               cccGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAcatcat                          >  2:4452902/1‑93 (MQ=255)

                                                                ccGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCAtt                         >  1:1152106/1‑93 (MQ=255)

                                                                ccGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCAtt                         <  2:3024422/93‑1 (MQ=255)

                                                                  ggCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTac                       <  2:2946046/93‑1 (MQ=255)

                                                                  ggCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTac                       <  2:2663226/93‑1 (MQ=255)

                                                                   gCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTacg                      >  1:1030358/1‑93 (MQ=255)

                                                                   gCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTacg                      >  1:252496/1‑93 (MQ=255)

                                                                     aaTCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTacgac                    >  2:2601913/1‑93 (MQ=255)

                                                                     aaTCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTacgac                    >  2:1460125/1‑93 (MQ=255)

                                                                     aaTCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTacgac                    <  1:955551/93‑1 (MQ=255)

                                                                      aTCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTacgacg                   >  1:2833046/1‑93 (MQ=255)

                                                                      aTCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTCTACATCATTacgacg                   >  1:5513671/1‑93 (MQ=255)

                                                                        cGCCTCCCCCGTCCCTCCCTGTCTGCTAAAAATGTGACTC‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCa                <  2:1499212/93‑1 (MQ=255)

                                                                         gCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCa                >  1:2471759/1‑93 (MQ=255)

                                                                         gCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCa                >  1:4350013/1‑93 (MQ=255)

                                                                            tCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAc             >  1:410829/1‑93 (MQ=255)

                                                                            tCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAc             >  1:3639129/1‑93 (MQ=255)

                                                                            tCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAc             >  1:3398263/1‑93 (MQ=255)

                                                                            tCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAc             >  2:5775287/1‑93 (MQ=255)

                                                                             cACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACt            >  2:1371087/1‑93 (MQ=255)

                                                                             cACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCATTGCCGGATGGCGGCCAAGAATCTGTTTACAACAATACGACGTCAAACt            <  1:6303698/93‑1 (MQ=255)

                                                                               cccGTCGCTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGc          <  1:5107310/93‑1 (MQ=255)

                                                                               cccGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAACCTGc          <  1:4388152/93‑1 (MQ=255)

                                                                               cccGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGc          >  1:885805/1‑93 (MQ=255)

                                                                               cccGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGc          <  2:5825970/93‑1 (MQ=255)

                                                                                  gTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTcc       <  1:4890741/93‑1 (MQ=255)

                                                                                  gTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTcc       >  1:5229577/1‑93 (MQ=255)

                                                                                  gTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTcc       >  2:314919/1‑93 (MQ=255)

                                                                                   tCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCt      <  1:362766/93‑1 (MQ=255)

                                                                                    cACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTg     <  2:5314178/93‑1 (MQ=255)

                                                                                     aCTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTgg    >  2:895461/1‑93 (MQ=255)

                                                                                      cTCCCTGTCTGCTAAAAATGTGACTCAAAACCCCTTTGCCGGATGGCGGCGCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGt   <  1:4440596/93‑1 (MQ=255)

CGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTT  >  NC_000913/3393816‑3393995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATAG  >  NC_000913/3393813‑3393999

ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCC                                                                                               <  SRR4302533.4629252/94‑1 (MQ=60)

ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCC                                                                                               <  SRR4302533.1495910/94‑1 (MQ=60)

ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCC                                                                                               >  SRR4302533.3817914/1‑94 (MQ=60)

  ACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTG                                                                                             <  SRR4302533.6250894/94‑1 (MQ=60)

  ACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTG                                                                                             <  SRR4302533.4746410/94‑1 (MQ=60)

  ACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTG                                                                                             >  SRR4302533.3505302/1‑94 (MQ=60)

  ACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTG                                                                                             <  SRR4302533.5792993/94‑1 (MQ=60)

  ACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTG                                                                                             <  SRR4302533.2413581/94‑1 (MQ=60)

    GCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTC                                                                                           >  SRR4302533.5757833/1‑94 (MQ=60)

     CAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCT                                                                                          <  SRR4302533.4862769/94‑1 (MQ=60)

      AGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTG                                                                                         <  SRR4302533.2113237/94‑1 (MQ=60)

        GCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCT                                                                                       <  SRR4302533.2661744/94‑1 (MQ=60)

             TAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAA                                                                                  >  SRR4302533.3844939/1‑94 (MQ=60)

              AACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAAT                                                                                 >  SRR4302533.1295913/1‑94 (MQ=60)

              AACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAAT                                                                                 >  SRR4302533.1831440/1‑94 (MQ=60)

               ACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATG                                                                                >  SRR4302533.3815085/1‑94 (MQ=60)

               ACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATG                                                                                >  SRR4302533.476054/1‑94 (MQ=60)

                CCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGT                                                                               <  SRR4302533.4249562/94‑1 (MQ=60)

                CCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGT                                                                               <  SRR4302533.2465784/94‑1 (MQ=60)

                 CAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTG                                                                              >  SRR4302533.1212148/1‑94 (MQ=60)

                 CAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTG                                                                              <  SRR4302533.3669976/94‑1 (MQ=60)

                 CAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTG                                                                              <  SRR4302533.5517768/94‑1 (MQ=60)

                  AGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGA                                                                             >  SRR4302533.3790102/1‑94 (MQ=60)

                    CAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACT                                                                           >  SRR4302533.4791830/1‑94 (MQ=60)

                    CAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACT                                                                           <  SRR4302533.5553181/94‑1 (MQ=60)

                     AGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTC                                                                          >  SRR4302533.6058024/1‑94 (MQ=60)

                     AGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTC                                                                          >  SRR4302533.62188/1‑94 (MQ=60)

                     AGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTA                                                                          >  SRR4302533.4973463/1‑94 (MQ=60)

                       GGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAA                                                                        <  SRR4302533.4267720/94‑1 (MQ=60)

                         CAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAA                                                                      >  SRR4302533.803772/1‑94 (MQ=60)

                         CAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAA                                                                      <  SRR4302533.6053357/94‑1 (MQ=60)

                         CAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAA                                                                      >  SRR4302533.2888396/1‑94 (MQ=60)

                          AGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAA                                                                     >  SRR4302533.5169470/1‑94 (MQ=60)

                          AGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAA                                                                     >  SRR4302533.3152492/1‑94 (MQ=60)

                          AGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAA                                                                     <  SRR4302533.5722014/94‑1 (MQ=60)

                          AGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAA                                                                     >  SRR4302533.1305803/1‑94 (MQ=60)

                            CGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACC                                                                   <  SRR4302533.4895006/94‑1 (MQ=60)

                            CGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACC                                                                   >  SRR4302533.2538059/1‑94 (MQ=60)

                            CGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACC                                                                   >  SRR4302533.3222358/1‑94 (MQ=60)

                             GATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCC                                                                  >  SRR4302533.3245479/1‑94 (MQ=60)

                              ATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCT                                                                 <  SRR4302533.3661892/94‑1 (MQ=60)

                                 ACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTG                                                              <  SRR4302533.845685/94‑1 (MQ=60)

                                  CAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCTTTCACTCCCTGTCTGCTAAAAATGAGACTCAAAAACCCTTTGC                                                             >  SRR4302533.5472739/1‑94 (MQ=60)

                                  CAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGC                                                             <  SRR4302533.5081476/94‑1 (MQ=60)

                                  CAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGC                                                             >  SRR4302533.2106010/1‑94 (MQ=60)

                                   AACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCC                                                            <  SRR4302533.4171478/94‑1 (MQ=60)

                                         CGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGG                                                      <  SRR4302533.1918334/94‑1 (MQ=60)

                                         CGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGG                                                      >  SRR4302533.5682350/1‑94 (MQ=60)

                                           CGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCG                                                    >  SRR4302533.1989624/1‑94 (MQ=60)

                                           CGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCG                                                    <  SRR4302533.4136717/94‑1 (MQ=60)

                                            GGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGG                                                   <  SRR4302533.3668943/94‑1 (MQ=60)

                                             GCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGC                                                  >  SRR4302533.2158202/1‑94 (MQ=60)

                                              CTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCC                                                 <  SRR4302533.3880992/94‑1 (MQ=60)

                                              CTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCC                                                 >  SRR4302533.2624539/1‑94 (MQ=60)

                                              CTCCAGTAAGCAGTAAAATCCCCGGCAAGCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCC                                                 <  SRR4302533.558183/94‑1 (MQ=60)

                                                CCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCA                                               <  SRR4302533.138925/94‑1 (MQ=60)

                                                CCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCA                                               >  SRR4302533.6115735/1‑94 (MQ=60)

                                                 CAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAG                                              >  SRR4302533.5283559/1‑94 (MQ=60)

                                                  AGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGC                                             >  SRR4302533.5884965/1‑94 (MQ=60)

                                                  AGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTCTGCCGGATGGCGGCCCAGC                                             >  SRR4302533.2209803/1‑94 (MQ=60)

                                                   GTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCA                                            <  SRR4302533.3885660/94‑1 (MQ=60)

                                                   GTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCA                                            >  SRR4302533.5573665/1‑94 (MQ=60)

                                                   GTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCA                                            >  SRR4302533.5987066/1‑94 (MQ=60)

                                                    TAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCAT                                           <  SRR4302533.2331274/94‑1 (MQ=60)

                                                    GAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCAT                                           <  SRR4302533.3531848/94‑1 (MQ=60)

                                                     AAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATC                                          >  SRR4302533.4385744/1‑94 (MQ=60)

                                                      AGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCT                                         >  SRR4302533.1150770/1‑94 (MQ=60)

                                                          GTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTT                                     <  SRR4302533.5011239/94‑1 (MQ=60)

                                                          GTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTT                                     <  SRR4302533.3295753/94‑1 (MQ=60)

                                                           TAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTA                                    >  SRR4302533.835312/1‑94 (MQ=60)

                                                            AAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAC                                   <  SRR4302533.676937/94‑1 (MQ=60)

                                                            AAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAC                                   <  SRR4302533.3465777/94‑1 (MQ=60)

                                                              AATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACAT                                 <  SRR4302533.2473086/94‑1 (MQ=60)

                                                              AATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACAT                                 >  SRR4302533.6238574/1‑94 (MQ=60)

                                                               ATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATC                                >  SRR4302533.441968/1‑94 (MQ=60)

                                                                TCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCA                               >  SRR4302533.3399775/1‑94 (MQ=60)

                                                                TCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCA                               <  SRR4302533.3651822/94‑1 (MQ=60)

                                                                 CCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCAT                              <  SRR4302533.2111301/94‑1 (MQ=60)

                                                                 CCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCAT                              >  SRR4302533.5097001/1‑94 (MQ=60)

                                                                  CCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATTGCGGCCCAGCATCTGTTTACATCATT                             <  SRR4302533.1653370/94‑1 (MQ=60)

                                                                  CCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATT                             >  SRR4302533.1159005/1‑94 (MQ=60)

                                                                   CCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTA                            >  SRR4302533.6188433/1‑94 (MQ=60)

                                                                    CGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGGCCAGCATCTGTTTACATCATTAC                           >  SRR4302533.4755592/1‑94 (MQ=60)

                                                                    CGCCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTAC                           <  SRR4302533.2972670/94‑1 (MQ=60)

                                                                     GGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACG                          >  SRR4302533.254049/1‑94 (MQ=60)

                                                                     GGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACG                          >  SRR4302533.5423852/1‑94 (MQ=60)

                                                                     GGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACG                          >  SRR4302533.1036418/1‑94 (MQ=60)

                                                                       CAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGAC                        >  SRR4302533.2367447/1‑94 (MQ=60)

                                                                        AATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACG                       >  SRR4302533.2850487/1‑94 (MQ=60)

                                                                        AATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACG                       <  SRR4302533.961162/94‑1 (MQ=60)

                                                                        AATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACG                       >  SRR4302533.6162438/1‑94 (MQ=60)

                                                                        AATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTCTACATCATTACGACG                       >  SRR4302533.5546956/1‑94 (MQ=60)

                                                                          TCGCCTCCCCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTC                     <  SRR4302533.2196765/94‑1 (MQ=60)

                                                                           CGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCA                    >  SRR4302533.2487003/1‑94 (MQ=60)

                                                                           CGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCA                    >  SRR4302533.4376247/1‑94 (MQ=60)

                                                                            GCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAA                   <  SRR4302533.4121648/94‑1 (MQ=60)

                                                                              CTCCCCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAC                 <  SRR4302533.385430/94‑1 (MQ=60)

                                                                              CTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAC                 >  SRR4302533.4818652/1‑94 (MQ=60)

                                                                              CTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAC                 >  SRR4302533.9907/1‑94 (MQ=60)

                                                                              CTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAC                 >  SRR4302533.413293/1‑94 (MQ=60)

                                                                              CTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAC                 >  SRR4302533.3661505/1‑94 (MQ=60)

                                                                              CTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAC                 >  SRR4302533.28544/1‑94 (MQ=60)

                                                                              CTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAC                 >  SRR4302533.5892648/1‑94 (MQ=60)

                                                                              CTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAC                 >  SRR4302533.3419250/1‑94 (MQ=60)

                                                                               TCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACT                <  SRR4302533.944837/94‑1 (MQ=60)

                                                                               TCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACT                <  SRR4302533.377839/94‑1 (MQ=60)

                                                                                CACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCATTGCCGGATGGCGGCCAAGAATCTGTTTACAACAATACGACGTCAAACTG               <  SRR4302533.6341383/94‑1 (MQ=60)

                                                                                 ACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGC              >  SRR4302533.891007/1‑94 (MQ=60)

                                                                                  CCCGTCGCTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCT             <  SRR4302533.5138167/94‑1 (MQ=60)

                                                                                  CCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAACCTGCT             <  SRR4302533.4414644/94‑1 (MQ=60)

                                                                                  CCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCT             <  SRR4302533.210986/94‑1 (MQ=60)

                                                                                    CGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCC           >  SRR4302533.5261034/1‑94 (MQ=60)

                                                                                     GTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCT          <  SRR4302533.4920371/94‑1 (MQ=60)

                                                                                     GTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCT          >  SRR4302533.1162347/1‑94 (MQ=60)

                                                                                      TCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTG         >  SRR4302533.3458796/1‑94 (MQ=60)

                                                                                      TCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTG         >  SRR4302533.5609222/1‑94 (MQ=60)

                                                                                      TCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTG         <  SRR4302533.364972/94‑1 (MQ=60)

                                                                                        ACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGT       <  SRR4302533.6096729/94‑1 (MQ=60)

                                                                                         CTCCCTGTCTGCTAAAAATGTGACTCAAAACCCCTTTGCCGGATGGCGGCGCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTT      <  SRR4302533.4467441/94‑1 (MQ=60)

                                                                                          TCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTA     >  SRR4302533.5649665/1‑94 (MQ=60)

                                                                                           CCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTAT    >  SRR4302533.2556113/1‑94 (MQ=60)

                                                                                           CCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTAT    >  SRR4302533.1371014/1‑94 (MQ=60)

                                                                                           CCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTAT    >  SRR4302533.4802944/1‑94 (MQ=60)

                                                                                            CCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATA   >  SRR4302533.691539/1‑94 (MQ=60)

                                                                                             CTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATAG  >  SRR4302533.6130725/1‑94 (MQ=60)

                                                                                             CTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATAG  >  SRR4302533.5940014/1‑94 (MQ=60)

                                                                                             CTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATAG  <  SRR4302533.2472535/94‑1 (MQ=60)

                                                                                             CTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATAG  >  SRR4302533.2436605/1‑94 (MQ=60)

ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATAG  >  NC_000913/3393813‑3393999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`