Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,418,840 +G coding (1070/1089 nt) b3269 → putative transport system permease protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,418,8371.G99.4% 992.0 / ‑1.8 308coding (1067/1089 nt)b3269putative transport system permease protein
Reads supporting (aligned to +/- strand):  ref base . (1/1);  new base G (155/150);  total (156/152)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01

Only 100 of 364 total aligned reads displayed.

GTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑AC‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACC  >  NC_000913/3418745‑3418925
                                                                                              |                                                                                         
 tATCTCAACATCGTCAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑AC‑g                                                                                          <  2:6428491/93‑1 (MQ=255)
 tATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑AC‑g                                                                                          >  2:1158546/1‑93 (MQ=255)
 tATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑AC‑g                                                                                          <  1:5373993/93‑1 (MQ=255)
 tATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑AC‑g                                                                                          >  2:2678033/1‑93 (MQ=255)
  aTCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑AC‑gg                                                                                         >  2:2643024/1‑93 (MQ=255)
    ctcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑AC‑gggg                                                                                       >  2:814410/1‑92 (MQ=255)
    ctcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑AC‑gggg                                                                                       <  2:2375236/93‑2 (MQ=255)
     tcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑AC‑ggggc                                                                                      >  2:435769/1‑91 (MQ=255)
      cAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑AC‑ggggca                                                                                     >  1:10002362/1‑90 (MQ=255)
      cAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑AC‑ggggca                                                                                     <  2:1321619/93‑4 (MQ=255)
       aaCATCGTCAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑AC‑ggggcaa                                                                                    <  2:5737695/93‑5 (MQ=255)
       aaCATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑AC‑ggggcaa                                                                                    >  1:9766708/1‑89 (MQ=255)
         cATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGc                                                                                  <  2:8764597/93‑1 (MQ=255)
          aTCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCTG‑ACGGGG‑CAAGcc                                                                                 >  2:8582139/1‑93 (MQ=255)
          aTCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGcc                                                                                 >  2:361260/1‑93 (MQ=255)
             gTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATc                                                                              >  1:2014072/1‑93 (MQ=255)
                 aaaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCgaga                                                                          >  2:7924737/1‑93 (MQ=255)
                   aaCTCCTCTCTTGCCGCCGCTATTGGATATCCCGATATGGTTTCGCTGTTTGCCGGCACAGTGCTGAATCAG‑ACGGGG‑CCAGCCATCGAGACg                                                                        >  1:7039518/1‑93 (MQ=255)
                    aCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGATACGa                                                                       >  1:5249361/1‑93 (MQ=255)
                     ctcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGag                                                                      >  1:8439041/1‑92 (MQ=255)
                      ccctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATa                                                                     <  2:1927986/92‑1 (MQ=255)
                       cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAg                                                                    <  2:5136974/93‑1 (MQ=255)
                         tctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGcc                                                                  >  2:8353285/1‑93 (MQ=255)
                         tctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGcc                                                                  >  1:1533323/1‑93 (MQ=255)
                         tctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGcc                                                                  <  1:6940775/93‑1 (MQ=255)
                         tctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGcc                                                                  >  2:5635018/1‑93 (MQ=255)
                          ctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCa                                                                 <  2:1967986/93‑1 (MQ=255)
                           tctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCAt                                                                <  2:1077888/93‑1 (MQ=255)
                           tctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCAt                                                                >  1:7597898/1‑93 (MQ=255)
                              tGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGAc                                                             <  2:6579872/93‑1 (MQ=255)
                                ccgcggCTATGGGCTATCCCGATAGGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCa                                                           <  1:5789461/93‑1 (MQ=255)
                                ccgccgCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCa                                                           <  2:6597008/93‑1 (MQ=255)
                                ccgccgCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCa                                                           <  2:8393019/93‑1 (MQ=255)
                                ccgccgCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCa                                                           <  1:5989138/93‑1 (MQ=255)
                                 cgccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCAt                                                          >  1:2869325/1‑93 (MQ=255)
                                 cgccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCAt                                                          >  1:2976322/1‑93 (MQ=255)
                                   ccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGt                                                        >  2:4791033/1‑93 (MQ=255)
                                   ccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGt                                                        <  2:313012/93‑1 (MQ=255)
                                   ccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGt                                                        <  1:3677723/93‑1 (MQ=255)
                                    cacTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTc                                                       <  1:3721594/91‑1 (MQ=255)
                                       tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCggc                                                    >  1:6033025/1‑92 (MQ=255)
                                       tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGt                                                    <  2:6010631/93‑1 (MQ=255)
                                       tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGt                                                    >  2:7298612/1‑93 (MQ=255)
                                       tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGCCGGt                                                    >  2:2285182/1‑93 (MQ=255)
                                        aTTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTc                                                   >  2:3081520/1‑93 (MQ=255)
                                         ttGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCt                                                  <  1:6553210/93‑1 (MQ=255)
                                          tGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGGCATGACCATGTCGGTCTa                                                 >  1:8916446/1‑93 (MQ=255)
                                          tGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTa                                                 >  1:7916014/1‑93 (MQ=255)
                                            gCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATc                                               <  1:3912447/93‑1 (MQ=255)
                                             cTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCt                                              >  1:9792815/1‑93 (MQ=255)
                                                tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt                                           >  1:8234217/1‑93 (MQ=255)
                                                 cccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAAGCAGCTG‑GGG‑CACGCCACCGAGACGCTAGACATGACCATGTCGGTCTCTGTGAta                                          >  1:3758870/1‑92 (MQ=255)
                                                  ccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTa                                         >  2:1702454/1‑93 (MQ=255)
                                                   cGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTAt                                        <  1:6167678/93‑1 (MQ=255)
                                                   cGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTAt                                        <  2:9404839/93‑1 (MQ=255)
                                                    gATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc                                       <  1:2602175/93‑1 (MQ=255)
                                                    gATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc                                       <  1:8560781/93‑1 (MQ=255)
                                                     atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGCTTATCa                                      >  2:7698582/1‑93 (MQ=255)
                                                     atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa                                      >  1:47141/1‑93 (MQ=255)
                                                     atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa                                      <  2:1632995/93‑1 (MQ=255)
                                                      tatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACTATAGCCATGACCATGTCGGTCTATCTGATTATCAg                                     >  1:672216/1‑93 (MQ=255)
                                                      tatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAg                                     <  2:1500843/93‑1 (MQ=255)
                                                       atGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGc                                    <  1:313203/93‑1 (MQ=255)
                                                       atGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGc                                    >  2:7091963/1‑93 (MQ=255)
                                                        tGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGcc                                   >  1:1061504/1‑93 (MQ=255)
                                                         ggTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCt                                  >  1:7451298/1‑93 (MQ=255)
                                                          gTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTg                                 >  2:4586040/1‑93 (MQ=255)
                                                           tttCGCTGTTTGCCGGCACAGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGa                                >  1:8301398/1‑93 (MQ=255)
                                                            ttCGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGAc                               <  1:4412685/93‑1 (MQ=255)
                                                              cGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTa                             <  1:4012306/93‑1 (MQ=255)
                                                              cGCTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGGCTATCTGATTATCAGCCTGCCTa                             >  2:58444/1‑93 (MQ=255)
                                                                cTGTTTGCCGGCACCGTGCTGAATCAG‑GCGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtc                           <  1:4856221/93‑1 (MQ=255)
                                                                cTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtc                           <  1:1351191/93‑1 (MQ=255)
                                                                cTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtc                           <  2:5356732/93‑1 (MQ=255)
                                                                cTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtc                           >  2:3995289/1‑93 (MQ=255)
                                                                cTGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtc                           <  2:4198987/93‑1 (MQ=255)
                                                                 tGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct                          <  2:4938615/93‑1 (MQ=255)
                                                                 tGTTTGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct                          >  2:61214/1‑93 (MQ=255)
                                                                   tttGCCGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCg                        >  2:6957347/1‑93 (MQ=255)
                                                                     tGCCGGCACGGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgct                      <  2:4850614/93‑1 (MQ=255)
                                                                      gccgccACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctg                     <  2:2450977/93‑1 (MQ=255)
                                                                       ccGGCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATCATCAGCCTGACTATCTCgctgc                    >  1:9890326/1‑93 (MQ=255)
                                                                          gCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtga                 <  1:3417756/93‑1 (MQ=255)
                                                                          gCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtga                 >  2:3664222/1‑93 (MQ=255)
                                                                          gCACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtga                 >  2:682532/1‑93 (MQ=255)
                                                                           cACCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgat                <  2:7394856/93‑1 (MQ=255)
                                                                            aCCGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgatg               >  1:3570973/1‑93 (MQ=255)
                                                                              cGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGaa             >  1:5074365/1‑93 (MQ=255)
                                                                              cGTGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGaa             <  1:9317900/93‑1 (MQ=255)
                                                                              cGTGCTGAATCAG‑AC‑GGGTCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGaa             <  1:8159625/93‑1 (MQ=255)
                                                                                tGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAata           >  1:8713975/1‑93 (MQ=255)
                                                                                tGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAata           >  1:7244374/1‑93 (MQ=255)
                                                                                tGCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAata           <  1:2507645/93‑1 (MQ=255)
                                                                                 gCTGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAatat          >  2:9013073/1‑93 (MQ=255)
                                                                                  cTGAATCGG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATc         <  2:2160977/93‑1 (MQ=255)
                                                                                   tGAATCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCt        <  2:2796581/93‑1 (MQ=255)
                                                                                     aaTCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCtat      <  2:1468612/93‑1 (MQ=255)
                                                                                     aaTCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCtat      >  2:7822709/1‑93 (MQ=255)
                                                                                     aaTCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCtat      >  1:571924/1‑93 (MQ=255)
                                                                                      aTCAG‑ACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCtata     <  2:3441728/93‑1 (MQ=255)
                                                                                              |                                                                                         
GTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAG‑AC‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACC  >  NC_000913/3418745‑3418925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCAT  >  NC_000913/3418747‑3418932
                                                                                               |                                                                                             
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGG                                                                                               <  SRR4302540.9900731/94‑1 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGG                                                                                               >  SRR4302540.5834217/1‑94 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGG                                                                                               >  SRR4302540.5834219/1‑94 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGG                                                                                               >  SRR4302540.6075950/1‑94 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGG                                                                                               >  SRR4302540.16841/1‑94 (MQ=60)
 TCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGG‑G                                                                                             <  SRR4302540.396024/94‑1 (MQ=60)
 TCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGG‑G                                                                                             >  SRR4302540.6196123/1‑94 (MQ=60)
 TCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGG‑C                                                                                             >  SRR4302540.3781708/1‑94 (MQ=60)
 TCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCAGGCACCGTGCTGAATCAGAC‑‑GGG‑G                                                                                             <  SRR4302540.65810/94‑1 (MQ=60)
  CTCAACATCGTCAAAAGCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGGgc                                                                                             <  SRR4302540.9192549/94‑3 (MQ=60)
  CTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGGgc                                                                                             >  SRR4302540.2845696/1‑92 (MQ=60)
  CTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGGgc                                                                                             >  SRR4302540.7850651/1‑92 (MQ=60)
  CTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGGgc                                                                                             >  SRR4302540.8191905/1‑92 (MQ=60)
   TCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGGgca                                                                                            >  SRR4302540.10118878/1‑91 (MQ=60)
    CAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAA                                                                                           >  SRR4302540.9881240/1‑94 (MQ=60)
     AACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAG                                                                                          >  SRR4302540.5492695/1‑94 (MQ=60)
     AACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAG                                                                                          >  SRR4302540.668914/1‑94 (MQ=60)
     AACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAG                                                                                          >  SRR4302540.2839080/1‑94 (MQ=60)
       CATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCC                                                                                        <  SRR4302540.9098847/94‑1 (MQ=60)
       CATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCC                                                                                        >  SRR4302540.3343120/1‑94 (MQ=60)
       CATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCACGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGGgcgagcc                                                                                        >  SRR4302540.7201524/1‑87 (MQ=60)
        ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCTGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCA                                                                                       >  SRR4302540.3458039/1‑94 (MQ=60)
         TCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCAT                                                                                      >  SRR4302540.8821606/1‑94 (MQ=60)
         TCGCCAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCAT                                                                                      <  SRR4302540.2961862/94‑1 (MQ=60)
          CGTCAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATC                                                                                     <  SRR4302540.3214239/94‑1 (MQ=60)
          CGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATC                                                                                     >  SRR4302540.2035843/1‑94 (MQ=60)
           GTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCG                                                                                    >  SRR4302540.2435709/1‑94 (MQ=60)
            TCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGA                                                                                   >  SRR4302540.3733589/1‑94 (MQ=60)
              AAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGA                                                                                 >  SRR4302540.4606207/1‑94 (MQ=60)
               AAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGAC                                                                                <  SRR4302540.6796936/94‑1 (MQ=60)
               AAAACTCCTCTCTTGCCGCCGCTATTGGCTCTCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGAC                                                                                <  SRR4302540.3999785/94‑1 (MQ=60)
               AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGGCATCGAGAC                                                                                >  SRR4302540.2906084/1‑94 (MQ=60)
               AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGAC                                                                                <  SRR4302540.7495798/94‑1 (MQ=60)
               AAAACTCCTCCCTTGCCGCCTCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGAC                                                                                <  SRR4302540.7495797/94‑1 (MQ=60)
                AAACTCCTCTCTTGCCGCCGCTATTGGATATCCCGATATGGTTTCGCTGTTTGCCGGCACAGTGCTGAATCAGACG‑GGG‑CCAGCCATCGAGACG                                                                               >  SRR4302540.7117779/1‑94 (MQ=60)
                 AACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGATACGA                                                                              >  SRR4302540.5306618/1‑94 (MQ=60)
                 AACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGA                                                                              >  SRR4302540.7908772/1‑94 (MQ=60)
                  ACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGAG                                                                             >  SRR4302540.8537005/1‑94 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATA                                                                            >  SRR4302540.677543/1‑94 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATA                                                                            >  SRR4302540.4163256/1‑94 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATA                                                                            <  SRR4302540.1153789/94‑1 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATA                                                                            <  SRR4302540.7532032/94‑1 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATA                                                                            >  SRR4302540.7250597/1‑94 (MQ=60)
                    TCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAG                                                                           >  SRR4302540.2460004/1‑94 (MQ=60)
                    CCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAG                                                                           <  SRR4302540.8049035/94‑1 (MQ=60)
                     CCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGC                                                                          <  SRR4302540.4865735/94‑1 (MQ=60)
                      CTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCC                                                                         >  SRR4302540.1550295/1‑94 (MQ=60)
                      CTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCC                                                                         >  SRR4302540.3092797/1‑94 (MQ=60)
                       TCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCA                                                                        <  SRR4302540.7018038/94‑1 (MQ=60)
                       TCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCA                                                                        >  SRR4302540.7648780/1‑94 (MQ=60)
                        CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCAT                                                                       >  SRR4302540.7683263/1‑94 (MQ=60)
                        CCCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGAAAGCCAT                                                                       <  SRR4302540.8366289/94‑1 (MQ=60)
                         TCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATG                                                                      <  SRR4302540.2319999/94‑1 (MQ=60)
                          CTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGA                                                                     <  SRR4302540.7324874/94‑1 (MQ=60)
                            TGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACC                                                                   <  SRR4302540.1506033/94‑1 (MQ=60)
                            TGCCGCCGCTATGGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACC                                                                   <  SRR4302540.8746581/94‑1 (MQ=60)
                              CCGCGGCTATGGGCTATCCCGATAGGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCAT                                                                 <  SRR4302540.5853430/94‑1 (MQ=60)
                              CCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGCCG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCAT                                                                 <  SRR4302540.9669588/94‑1 (MQ=60)
                              CCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCAT                                                                 <  SRR4302540.5853429/94‑1 (MQ=60)
                              CCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCAT                                                                 >  SRR4302540.3009215/1‑94 (MQ=60)
                              CCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCAT                                                                 >  SRR4302540.2900481/1‑94 (MQ=60)
                              CCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCAT                                                                 <  SRR4302540.6055479/94‑1 (MQ=60)
                                 CCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTC                                                              <  SRR4302540.3717927/94‑1 (MQ=60)
                                  CGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCG                                                             <  SRR4302540.7029130/94‑1 (MQ=60)
                                  CGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCG                                                             <  SRR4302540.8262115/94‑1 (MQ=60)
                                  CGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCACACG‑GGG‑CAAGCCATCGAGTCGATAGCCATGACCATGTCG                                                             >  SRR4302540.5210628/1‑94 (MQ=60)
                                  CACTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCG                                                             <  SRR4302540.3762197/94‑1 (MQ=60)
                                   GCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGG                                                            >  SRR4302540.1758068/1‑94 (MQ=60)
                                    CTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGT                                                           >  SRR4302540.832943/1‑94 (MQ=60)
                                    CTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGC                                                           >  SRR4302540.6099984/1‑94 (MQ=60)
                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTC                                                          >  SRR4302540.6778329/1‑94 (MQ=60)
                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTC                                                          >  SRR4302540.1250394/1‑94 (MQ=60)
                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTC                                                          >  SRR4302540.1223621/1‑94 (MQ=60)
                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTC                                                          <  SRR4302540.1046720/94‑1 (MQ=60)
                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTC                                                          <  SRR4302540.1046719/94‑1 (MQ=60)
                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTC                                                          >  SRR4302540.4043933/1‑94 (MQ=60)
                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTC                                                          >  SRR4302540.9938581/1‑94 (MQ=60)
                                      ATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCT                                                         <  SRR4302540.4813060/94‑1 (MQ=60)
                                      ATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCT                                                         >  SRR4302540.375237/1‑94 (MQ=60)
                                       TTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGGCATGACCATGTCGGTCTA                                                        >  SRR4302540.9019713/1‑94 (MQ=60)
                                       TTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTA                                                        >  SRR4302540.8008301/1‑94 (MQ=60)
                                       TTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTA                                                        <  SRR4302540.6625887/94‑1 (MQ=60)
                                       TTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTA                                                        >  SRR4302540.1496849/1‑94 (MQ=60)
                                          GCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCT                                                     <  SRR4302540.3954833/94‑1 (MQ=60)
                                          GCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCT                                                     >  SRR4302540.9907526/1‑94 (MQ=60)
                                          GCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCT                                                     <  SRR4302540.5373191/94‑1 (MQ=60)
                                          GCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCT                                                     >  SRR4302540.9907525/1‑94 (MQ=60)
                                           CTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTAGGTCTATCTG                                                    >  SRR4302540.8980825/1‑94 (MQ=60)
                                            TATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGA                                                   <  SRR4302540.5505288/94‑1 (MQ=60)
                                             TTCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT                                                  <  SRR4302540.6107785/94‑1 (MQ=60)
                                             ATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT                                                  <  SRR4302540.8645772/94‑1 (MQ=60)
                                             ATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT                                                  >  SRR4302540.8329930/1‑94 (MQ=60)
                                              TCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATT                                                 >  SRR4302540.3799874/1‑94 (MQ=60)
                                              TCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAAGCAG‑CTGGGG‑CACGCCACCGAGACGCTAGACATGACCATGTCGGTCTctgtgata                                                 >  SRR4302540.3799873/1‑86 (MQ=45)
                                               CCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTA                                                <  SRR4302540.5645448/94‑1 (MQ=60)
                                                CCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTAT                                               >  SRR4302540.2030777/1‑94 (MQ=60)
                                                 CGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATC                                              <  SRR4302540.6236395/94‑1 (MQ=60)
                                                 CGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATC                                              >  SRR4302540.2748515/1‑94 (MQ=60)
                                                 CGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATC                                              >  SRR4302540.3736805/1‑94 (MQ=60)
                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                             <  SRR4302540.2630241/94‑1 (MQ=60)
                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                             >  SRR4302540.47618/1‑94 (MQ=60)
                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                             >  SRR4302540.8277048/1‑94 (MQ=60)
                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                             <  SRR4302540.8660208/94‑1 (MQ=60)
                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                             <  SRR4302540.517182/94‑1 (MQ=60)
                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                             <  SRR4302540.537763/94‑1 (MQ=60)
                                                   ATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACTATAGCCATGACCATGTCGGTCTATCTGATTATCAG                                            >  SRR4302540.679418/1‑94 (MQ=60)
                                                   ATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG                                            >  SRR4302540.3621060/1‑94 (MQ=60)
                                                    TATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGC                                           <  SRR4302540.8509398/94‑1 (MQ=60)
                                                     ATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCC                                          >  SRR4302540.1072311/1‑94 (MQ=60)
                                                     ATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCC                                          <  SRR4302540.316319/94‑1 (MQ=60)
                                                      TGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCT                                         >  SRR4302540.7534354/1‑94 (MQ=60)
                                                        GTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGA                                       >  SRR4302540.9758617/1‑94 (MQ=60)
                                                        GTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGA                                       >  SRR4302540.9983456/1‑94 (MQ=60)
                                                        GTTTCGCTGTTTGCCGGCACAGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGA                                       >  SRR4302540.8397783/1‑94 (MQ=60)
                                                          TTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACT                                     <  SRR4302540.6931074/94‑1 (MQ=60)
                                                          TTCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACT                                     <  SRR4302540.4460512/94‑1 (MQ=60)
                                                           TCGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTA                                    >  SRR4302540.3712517/1‑94 (MQ=60)
                                                            CGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAT                                   <  SRR4302540.4055519/94‑1 (MQ=60)
                                                            CGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAT                                   >  SRR4302540.632703/1‑94 (MQ=60)
                                                            CGCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAT                                   >  SRR4302540.7098125/1‑94 (MQ=60)
                                                             GCTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATC                                  >  SRR4302540.9626706/1‑94 (MQ=60)
                                                              CTGTTTGCCGGCACCGTGCTGAATCAGGCG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCT                                 <  SRR4302540.4908279/94‑1 (MQ=60)
                                                              CTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCT                                 >  SRR4302540.7164648/1‑94 (MQ=60)
                                                              CTGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCT                                 <  SRR4302540.1365400/94‑1 (MQ=60)
                                                               TGTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTC                                >  SRR4302540.7586101/1‑94 (MQ=60)
                                                                GTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCG                               >  SRR4302540.3541602/1‑94 (MQ=60)
                                                                GTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCG                               >  SRR4302540.3541603/1‑94 (MQ=60)
                                                                GTTTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCG                               <  SRR4302540.3858591/94‑1 (MQ=60)
                                                                  TTGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCT                             <  SRR4302540.8132664/94‑1 (MQ=60)
                                                                   TGCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTG                            <  SRR4302540.3772003/94‑1 (MQ=60)
                                                                    GCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGC                           >  SRR4302540.4765896/1‑94 (MQ=60)
                                                                    GCCGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATCATCAGCCTGACTATCTCGCTGC                           >  SRR4302540.10005806/1‑94 (MQ=60)
                                                                      CGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGCCTATCTAGCTGCTG                         >  SRR4302540.8623022/1‑94 (MQ=60)
                                                                      CGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTG                         >  SRR4302540.8623023/1‑94 (MQ=60)
                                                                      CGGCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTG                         >  SRR4302540.2621204/1‑94 (MQ=60)
                                                                        GCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGAT                       >  SRR4302540.8365795/1‑94 (MQ=60)
                                                                        GCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGAT                       <  SRR4302540.3454945/94‑1 (MQ=60)
                                                                        GCACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGAT                       >  SRR4302540.2988182/1‑94 (MQ=60)
                                                                         CACCGTGTTAAATCAGCCG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATG                      <  SRR4302540.5885537/94‑1 (MQ=60)
                                                                         CACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATG                      >  SRR4302540.3609980/1‑94 (MQ=60)
                                                                         CACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATG                      <  SRR4302540.5885535/94‑1 (MQ=60)
                                                                          ACCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGA                     >  SRR4302540.8754165/1‑94 (MQ=60)
                                                                           CCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAA                    >  SRR4302540.5129227/1‑94 (MQ=60)
                                                                           CCGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAA                    >  SRR4302540.5129225/1‑94 (MQ=60)
                                                                            CGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAAT                   <  SRR4302540.6711013/94‑1 (MQ=60)
                                                                            CGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAAT                   <  SRR4302540.9429091/94‑1 (MQ=60)
                                                                            CGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAAT                   <  SRR4302540.330029/94‑1 (MQ=60)
                                                                            CGTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAAA                   >  SRR4302540.6060240/1‑94 (MQ=60)
                                                                            CGTGCTGAATCAGAC‑‑GGGTCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAAT                   <  SRR4302540.8254371/94‑1 (MQ=60)
                                                                            CGTGCGAAATCAGACG‑GGG‑CAAGCCGTCGAGGCGATAGCGATGACGATGTCGGTCTATCTGATTATCCGCCTGACTAGCTCGCTGCTGATGAAT                   <  SRR4302540.330028/94‑1 (MQ=53)
                                                                            CCTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAAT                   <  SRR4302540.769429/94‑1 (MQ=60)
                                                                             GTGCTGATTCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATA                  <  SRR4302540.9944532/94‑1 (MQ=60)
                                                                             GTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATA                  >  SRR4302540.7325195/1‑94 (MQ=60)
                                                                             GTGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATA                  >  SRR4302540.8815135/1‑94 (MQ=60)
                                                                              TGCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATAT                 <  SRR4302540.2534727/94‑1 (MQ=60)
                                                                               GCTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATC                >  SRR4302540.3074934/1‑94 (MQ=60)
                                                                                CTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCT               >  SRR4302540.9150173/1‑94 (MQ=60)
                                                                                CTGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCT               >  SRR4302540.5003889/1‑94 (MQ=60)
                                                                                 TGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTA              <  SRR4302540.4599858/94‑1 (MQ=60)
                                                                                 TGAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTA              >  SRR4302540.4528293/1‑94 (MQ=60)
                                                                                  GAATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTAT             >  SRR4302540.578135/1‑94 (MQ=60)
                                                                                   AATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATA            >  SRR4302540.382897/1‑94 (MQ=60)
                                                                                   AATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATA            <  SRR4302540.6855185/94‑1 (MQ=60)
                                                                                    ATCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA           <  SRR4302540.5907115/94‑1 (MQ=60)
                                                                                     atcagccgGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA           <  SRR4302540.9002172/86‑1 (MQ=60)
                                                                                     TCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAC          <  SRR4302540.431848/94‑1 (MQ=60)
                                                                                     TCAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAC          >  SRR4302540.6131698/1‑94 (MQ=60)
                                                                                      CAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACC         <  SRR4302540.2726536/94‑1 (MQ=60)
                                                                                      CAGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAAC         >  SRR4302540.7966024/1‑94 (MQ=60)
                                                                                       AGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATCACCG        >  SRR4302540.7745425/1‑94 (MQ=60)
                                                                                       AGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCG        >  SRR4302540.7745156/1‑94 (MQ=60)
                                                                                       AGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCG        >  SRR4302540.630538/1‑94 (MQ=60)
                                                                                       AGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCG        <  SRR4302540.588193/94‑1 (MQ=60)
                                                                                       AGACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCG        <  SRR4302540.749400/94‑1 (MQ=60)
                                                                                        GACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGC       <  SRR4302540.6203673/94‑1 (MQ=60)
                                                                                        GACG‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGC       <  SRR4302540.5311471/94‑1 (MQ=60)
                                                                                          G‑‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGC    >  SRR4302540.411157/1‑94 (MQ=60)
                                                                                           cgGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCG     >  SRR4302540.7029169/3‑94 (MQ=60)
                                                                                           cgGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCG     >  SRR4302540.3436630/3‑94 (MQ=60)
                                                                                              GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCAT  <  SRR4302540.631273/94‑1 (MQ=60)
                                                                                              GG‑CAAGACATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCAT  <  SRR4302540.6954196/94‑1 (MQ=60)
                                                                                               |                                                                                             
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCAT  >  NC_000913/3418747‑3418932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑