Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,418,840	+G	coding (1070/1089 nt)	b3269 →	putative transport system permease protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,418,837	1	.	G	100.0%	706.2 / NA	219	T356R (ACG→AGG)	b3269	putative transport system permease protein
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (120/99); total (120/99)

Only 100 of 257 total aligned reads displayed.

GTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAC  >  NC_000913/3418745‑3418924

gTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAc                                                                                           <  1:3656867/93‑1 (MQ=255)

 tATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑g                                                                                         >  2:2695847/1‑93 (MQ=255)

  aTCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg                                                                                        >  2:3044184/1‑93 (MQ=255)

  aTCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg                                                                                        >  2:4063401/1‑93 (MQ=255)

  aTCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg                                                                                        <  2:4130785/93‑1 (MQ=255)

  aTCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg                                                                                        <  2:4426422/93‑1 (MQ=255)

   tctcAACATCGTCAAAAACTCCTCTCTTTCCGCCGCCCTTAGCTATCCCGCTATGGTTTTTCTGTTTTCTGGCACCGTGCTGAATTAGAC‑gg‑g                                                                                      >  2:4591946/1‑93 (MQ=255)

   tctcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg‑g                                                                                      <  2:5467649/93‑1 (MQ=255)

    ctcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg‑gg                                                                                     <  1:4261590/93‑2 (MQ=255)

     tcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg‑ggc                                                                                    >  2:3660671/1‑91 (MQ=255)

         cATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGc                                                                                 <  1:3814382/93‑1 (MQ=255)

          aTCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGcc                                                                                >  2:5289446/1‑93 (MQ=255)

          aTCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGcc                                                                                >  1:6272645/1‑93 (MQ=255)

          aTCGTCAAAAACCCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGcc                                                                                <  1:1172673/93‑1 (MQ=255)

           tCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCa                                                                               >  1:1411445/1‑93 (MQ=255)

           tCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCa                                                                               >  1:2750506/1‑93 (MQ=255)

           tCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCa                                                                               >  2:3967990/1‑93 (MQ=255)

             gTCAAAATCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATc                                                                             <  2:1044545/93‑1 (MQ=255)

             gTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATc                                                                             <  1:895902/93‑1 (MQ=255)

              tCAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCg                                                                            <  2:1323690/93‑1 (MQ=255)

              tCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCg                                                                            >  1:3048153/1‑93 (MQ=255)

               cAAAATCGCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCga                                                                           <  2:5377997/93‑1 (MQ=255)

               cAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCga                                                                           <  1:5505210/93‑1 (MQ=255)

               cAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCga                                                                           >  2:1207419/1‑93 (MQ=255)

                 aaacCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCgaga                                                                         <  2:1128736/93‑1 (MQ=255)

                 aaaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCgaga                                                                         >  2:144891/1‑93 (MQ=255)

                 aaaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCgaga                                                                         <  2:5979086/93‑1 (MQ=255)

                 aaaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCgaga                                                                         <  2:73396/93‑1 (MQ=255)

                  aaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGAc                                                                        <  2:3596799/93‑1 (MQ=255)

                  aaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGAc                                                                        >  1:960031/1‑93 (MQ=255)

                   aaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACg                                                                       >  2:1156741/1‑93 (MQ=255)

                    aCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGa                                                                      <  1:1326645/93‑1 (MQ=255)

                     ctcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGAt                                                                     <  1:2631312/93‑1 (MQ=255)

                      tcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATa                                                                    <  1:685023/93‑1 (MQ=255)

                      ccctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATa                                                                    <  2:5007642/92‑1 (MQ=255)

                      ccctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATa                                                                    <  1:5699218/92‑1 (MQ=255)

                       cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAg                                                                   >  2:1579743/1‑93 (MQ=255)

                        ctctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGc                                                                  >  1:152641/1‑93 (MQ=255)

                         tctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGcc                                                                 >  2:4720524/1‑93 (MQ=255)

                         tctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGcc                                                                 <  1:18427/93‑1 (MQ=255)

                           tctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCAt                                                               >  2:4876068/1‑93 (MQ=255)

                             ttGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGa                                                             >  1:1914804/1‑93 (MQ=255)

                             ttGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGa                                                             >  1:6037137/1‑93 (MQ=255)

                              tGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGAc                                                            >  1:4927394/1‑93 (MQ=255)

                                ccgccgCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCa                                                          >  2:2210308/1‑93 (MQ=255)

                                   ccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGt                                                       >  1:3579322/1‑93 (MQ=255)

                                    cgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTc                                                      >  1:4307188/1‑93 (MQ=255)

                                      cTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGACATGACCATGTCgg                                                    >  1:1091694/1‑93 (MQ=255)

                                       tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGt                                                   <  2:3400271/93‑1 (MQ=255)

                                       tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGt                                                   <  1:1299219/93‑1 (MQ=255)

                                        aTTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTc                                                  >  2:293845/1‑93 (MQ=255)

                                        aTTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTc                                                  >  1:3987052/1‑93 (MQ=255)

                                         ttGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGTCATGACCATGTCGGTCt                                                 >  2:1656406/1‑93 (MQ=255)

                                         ttGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCt                                                 <  1:2603006/93‑1 (MQ=255)

                                         ttGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCt                                                 >  2:3732103/1‑93 (MQ=255)

                                           ggCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTAt                                               <  1:1934415/93‑1 (MQ=255)

                                            gCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATc                                              >  1:4186938/1‑93 (MQ=255)

                                             cTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGTCATCGAGACGATAGCCATGACCATGTCGGTCTATCt                                             >  2:2056447/1‑93 (MQ=255)

                                              tATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTg                                            >  1:5226125/1‑93 (MQ=255)

                                               aTCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGa                                           >  1:865530/1‑93 (MQ=255)

                                               aTCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGa                                           <  2:658516/93‑1 (MQ=255)

                                               aTCCCAATATGTTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGa                                           <  2:2281139/93‑1 (MQ=255)

                                                tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt                                          <  1:5764483/93‑1 (MQ=255)

                                                 cccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAtt                                         <  1:39267/93‑1 (MQ=255)

                                                     atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa                                     >  1:4064888/1‑93 (MQ=255)

                                                      tatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAg                                    >  1:5592824/1‑93 (MQ=255)

                                                        tGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGcc                                  <  2:5646107/93‑1 (MQ=255)

                                                        tGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGcc                                  >  2:4007211/1‑93 (MQ=255)

                                                           tttCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGa                               >  2:506651/1‑93 (MQ=255)

                                                              cGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTa                            >  2:801668/1‑93 (MQ=255)

                                                               gCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAt                           >  2:2570477/1‑93 (MQ=255)

                                                               gCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAt                           >  2:4441000/1‑93 (MQ=255)

                                                                 tggttGCCGGCACCGTGCTGAATCAGCC‑GGCGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct                         <  1:1642538/90‑1 (MQ=255)

                                                                  gTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtctc                        >  2:6074442/1‑93 (MQ=255)

                                                                  gTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtctc                        <  1:4216964/93‑1 (MQ=255)

                                                                  gTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtctc                        <  2:3254164/93‑1 (MQ=255)

                                                                    ttGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgc                      <  1:3766443/93‑1 (MQ=255)

                                                                       ccGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgc                   <  1:1811972/93‑1 (MQ=255)

                                                                        cGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgct                  <  2:6241066/93‑1 (MQ=255)

                                                                          gCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtga                >  2:1928244/1‑93 (MQ=255)

                                                                            aCCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgatg              >  2:1705302/1‑93 (MQ=255)

                                                                            aCCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgatg              >  2:5129760/1‑93 (MQ=255)

                                                                             ccGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgatga             >  1:632481/1‑93 (MQ=255)

                                                                               gTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGGat           >  1:2788668/1‑93 (MQ=255)

                                                                               gTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAat           <  2:4244460/93‑1 (MQ=255)

                                                                                tGCTGACTCAGCCGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCCGCTGATGAata          <  1:1715364/93‑1 (MQ=255)

                                                                                tGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAata          <  2:948511/93‑1 (MQ=255)

                                                                                tGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAata          <  1:292329/93‑1 (MQ=255)

                                                                                tGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAata          <  1:2410812/93‑1 (MQ=255)

                                                                                tGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTAACATCCTGACTATCTCGCTGCTGATGAata          <  1:3159464/93‑1 (MQ=255)

                                                                                 gCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAatat         <  2:2772303/93‑1 (MQ=255)

                                                                                 gCTGAAGCAGACGGG‑GCAAGCCATCGAGACGATAGCCGTGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAatat         <  1:5123854/93‑1 (MQ=255)

                                                                                    gAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCta      >  1:2845095/1‑93 (MQ=255)

                                                                                    gAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCta      >  1:3313705/1‑93 (MQ=255)

                                                                                    gAAGCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCta      <  1:1746840/93‑1 (MQ=255)

                                                                                      aTCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCtata    <  1:1011176/93‑1 (MQ=255)

                                                                                      aTCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCtata    <  1:668276/93‑1 (MQ=255)

                                                                                       tCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATaa   >  2:5794200/1‑93 (MQ=255)

                                                                                       tCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATaa   <  1:1242439/93‑1 (MQ=255)

                                                                                       acAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATaa   <  2:5903891/92‑1 (MQ=255)

GTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAC  >  NC_000913/3418745‑3418924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATC  >  NC_000913/3418747‑3418933

ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GG‑G                                                                                               >  SRR4302533.1970755/1‑94 (MQ=60)

 TCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GG‑GG                                                                                              <  SRR4302533.1803928/94‑1 (MQ=60)

  CTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GG‑Ggc                                                                                             <  SRR4302533.4287269/94‑3 (MQ=60)

  CTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GG‑Ggc                                                                                             >  SRR4302533.1294498/1‑92 (MQ=60)

  CTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GG‑Ggc                                                                                             >  SRR4302533.2815027/1‑92 (MQ=60)

   TCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GG‑Ggca                                                                                            <  SRR4302533.3802253/94‑4 (MQ=60)

    CAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAA                                                                                            >  SRR4302533.4139851/1‑94 (MQ=60)

     AACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAG                                                                                           >  SRR4302533.2716296/1‑94 (MQ=60)

      ACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GG‑Gggaagc                                                                                         >  SRR4302533.2132717/1‑88 (MQ=60)

       CATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCC                                                                                         >  SRR4302533.6310113/1‑94 (MQ=60)

       CATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCC                                                                                         >  SRR4302533.68726/1‑94 (MQ=60)

       CATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCC                                                                                         <  SRR4302533.3837708/94‑1 (MQ=60)

       CATCGTCAAAAACTCCGCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCC                                                                                         <  SRR4302533.1307644/94‑1 (MQ=60)

        ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCA                                                                                        <  SRR4302533.1941364/94‑1 (MQ=60)

        ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCA                                                                                        >  SRR4302533.1419978/1‑94 (MQ=60)

        ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCA                                                                                        >  SRR4302533.2767368/1‑94 (MQ=60)

        ATCGTCAAAAACCCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCA                                                                                        <  SRR4302533.1179712/94‑1 (MQ=60)

          CGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATC                                                                                      >  SRR4302533.3780619/1‑94 (MQ=60)

           GTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCG                                                                                     >  SRR4302533.3066815/1‑94 (MQ=60)

           GTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCG                                                                                     >  SRR4302533.5059741/1‑94 (MQ=60)

           GTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCG                                                                                     <  SRR4302533.901164/94‑1 (MQ=60)

             CAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAG                                                                                   <  SRR4302533.5538427/94‑1 (MQ=60)

             CAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAG                                                                                   >  SRR4302533.2644606/1‑94 (MQ=60)

             CAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAG                                                                                   <  SRR4302533.4238978/94‑1 (MQ=60)

               AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGAC                                                                                 >  SRR4302533.4034740/1‑94 (MQ=60)

               AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGAC                                                                                 >  SRR4302533.965676/1‑94 (MQ=60)

               AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGAC                                                                                 <  SRR4302533.311830/94‑1 (MQ=60)

                 AACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGA                                                                               >  SRR4302533.1174309/1‑94 (MQ=60)

                 AACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGA                                                                               >  SRR4302533.1403057/1‑94 (MQ=60)

                  ACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGAT                                                                              >  SRR4302533.4343794/1‑94 (MQ=60)

                  ACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGAT                                                                              <  SRR4302533.1334604/94‑1 (MQ=60)

                  ACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGAT                                                                              <  SRR4302533.1833978/94‑1 (MQ=60)

                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATA                                                                             >  SRR4302533.1899/1‑94 (MQ=60)

                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATA                                                                             <  SRR4302533.2647483/94‑1 (MQ=60)

                    TCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAG                                                                            <  SRR4302533.689074/94‑1 (MQ=60)

                    CCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAG                                                                            <  SRR4302533.5733637/94‑1 (MQ=60)

                     CCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGC                                                                           >  SRR4302533.153617/1‑94 (MQ=60)

                      CTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCC                                                                          >  SRR4302533.670326/1‑94 (MQ=60)

                      CTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGATTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCG                                                                          >  SRR4302533.3096363/1‑94 (MQ=60)

                       TCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCA                                                                         <  SRR4302533.18552/94‑1 (MQ=60)

                       TCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCA                                                                         <  SRR4302533.5855635/94‑1 (MQ=60)

                        CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCAT                                                                        >  SRR4302533.5475178/1‑94 (MQ=60)

                         TCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATG                                                                       <  SRR4302533.1811082/94‑1 (MQ=60)

                          CTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGA                                                                      >  SRR4302533.6073721/1‑94 (MQ=60)

                          CTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGA                                                                      >  SRR4302533.109182/1‑94 (MQ=60)

                          CTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGA                                                                      >  SRR4302533.1926492/1‑94 (MQ=60)

                           TTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGAC                                                                     >  SRR4302533.4957235/1‑94 (MQ=60)

                           TTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGAC                                                                     >  SRR4302533.537690/1‑94 (MQ=60)

                            TGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACC                                                                    >  SRR4302533.3473589/1‑94 (MQ=60)

                            TGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACC                                                                    <  SRR4302533.5715852/94‑1 (MQ=60)

                              CCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCAT                                                                  <  SRR4302533.1656882/94‑1 (MQ=60)

                              CCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCAT                                                                  <  SRR4302533.5157938/94‑1 (MQ=60)

                               CGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATG                                                                 >  SRR4302533.919545/1‑94 (MQ=60)

                                GCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGT                                                                >  SRR4302533.3601378/1‑94 (MQ=60)

                                GCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGT                                                                <  SRR4302533.1615263/94‑1 (MQ=60)

                                 CCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTC                                                               <  SRR4302533.4166211/94‑1 (MQ=60)

                                 CCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTC                                                               >  SRR4302533.4333110/1‑94 (MQ=60)

                                   GCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGG                                                             >  SRR4302533.761807/1‑94 (MQ=60)

                                   GCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGACATGACCATGTCGG                                                             >  SRR4302533.1098146/1‑94 (MQ=60)

                                    CTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGT                                                            <  SRR4302533.1286920/94‑1 (MQ=60)

                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTC                                                           <  SRR4302533.1307037/94‑1 (MQ=60)

                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTC                                                           >  SRR4302533.170009/1‑94 (MQ=60)

                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTC                                                           >  SRR4302533.4011338/1‑94 (MQ=60)

                                       TTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTA                                                         <  SRR4302533.2618999/94‑1 (MQ=60)

                                       TTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGACATGACCATGTCGGTCTA                                                         >  SRR4302533.1602264/1‑94 (MQ=60)

                                        TGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTAT                                                        <  SRR4302533.146502/94‑1 (MQ=60)

                                         GGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATC                                                       <  SRR4302533.1946217/94‑1 (MQ=60)

                                         GGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATC                                                       >  SRR4302533.4212292/1‑94 (MQ=60)

                                         GGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATC                                                       >  SRR4302533.3974169/1‑94 (MQ=60)

                                          GCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCT                                                      <  SRR4302533.901440/94‑1 (MQ=60)

                                           CTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTG                                                     >  SRR4302533.5257573/1‑94 (MQ=60)

                                            TATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGA                                                    >  SRR4302533.4319971/1‑94 (MQ=60)

                                            TATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGA                                                    >  SRR4302533.870598/1‑94 (MQ=60)

                                            TATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGA                                                    >  SRR4302533.2668603/1‑94 (MQ=60)

                                             ATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT                                                   >  SRR4302533.5646827/1‑94 (MQ=60)

                                             ATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT                                                   >  SRR4302533.1727507/1‑94 (MQ=60)

                                              TCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATT                                                  <  SRR4302533.5799271/94‑1 (MQ=60)

                                               CCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTA                                                 <  SRR4302533.39528/94‑1 (MQ=60)

                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                              <  SRR4302533.1214666/94‑1 (MQ=60)

                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                              >  SRR4302533.4266717/1‑94 (MQ=60)

                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                              >  SRR4302533.3680377/1‑94 (MQ=60)

                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                              >  SRR4302533.4089632/1‑94 (MQ=60)

                                                   ATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG                                             >  SRR4302533.2042989/1‑94 (MQ=60)

                                                   ATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG                                             >  SRR4302533.5626612/1‑94 (MQ=60)

                                                   ATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG                                             >  SRR4302533.1160153/1‑94 (MQ=60)

                                                     ATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCC                                           >  SRR4302533.6182590/1‑94 (MQ=60)

                                                     ATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCC                                           >  SRR4302533.3899551/1‑94 (MQ=60)

                                                       GGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTG                                         >  SRR4302533.6264054/1‑94 (MQ=60)

                                                        GTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGA                                        >  SRR4302533.3983396/1‑94 (MQ=60)

                                                        GTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGA                                        <  SRR4302533.3014086/94‑1 (MQ=60)

                                                          TTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGACATGACCATGTCGGTCTATCTGATTATCAGCCTGACT                                      >  SRR4302533.2817697/1‑94 (MQ=60)

                                                           TCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTA                                     >  SRR4302533.757675/1‑94 (MQ=60)

                                                            CGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAT                                    >  SRR4302533.2555948/1‑94 (MQ=60)

                                                             GCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATC                                   <  SRR4302533.4277261/94‑1 (MQ=60)

                                                              CTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCT                                  <  SRR4302533.1361441/94‑1 (MQ=60)

                                                               TGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTC                                 >  SRR4302533.602077/1‑94 (MQ=60)

                                                               TGGTTGCCGGCACCGTGCTGAATCAGCC‑GGCGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTC                                 <  SRR4302533.1652486/94‑1 (MQ=60)

                                                                GTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCG                                <  SRR4302533.2919127/94‑1 (MQ=60)

                                                                GTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCG                                <  SRR4302533.4242474/94‑1 (MQ=60)

                                                                  TTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCT                              <  SRR4302533.3789533/94‑1 (MQ=60)

                                                                  TTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCT                              <  SRR4302533.6321034/94‑1 (MQ=60)

                                                                  TTCCCGGCACCGTGCTAAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCT                              <  SRR4302533.2694927/94‑1 (MQ=60)

                                                                     CCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCT                           <  SRR4302533.1823042/94‑1 (MQ=60)

                                                                        GCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGAT                        <  SRR4302533.4998797/94‑1 (MQ=60)

                                                                          ACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGA                      >  SRR4302533.636203/1‑94 (MQ=60)

                                                                          ACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGA                      >  SRR4302533.1895960/1‑94 (MQ=60)

                                                                           CCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAA                     <  SRR4302533.4830497/94‑1 (MQ=60)

                                                                           CCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAA                     >  SRR4302533.3395412/1‑94 (MQ=60)

                                                                            CGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGGAT                    >  SRR4302533.2805808/1‑94 (MQ=60)

                                                                            CGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAAT                    <  SRR4302533.890408/94‑1 (MQ=60)

                                                                              TGCTGACTCAGCCGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCCGCTGATGAATAT                  <  SRR4302533.1725764/94‑1 (MQ=60)

                                                                              TGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATAT                  <  SRR4302533.294116/94‑1 (MQ=60)

                                                                              TGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATAT                  <  SRR4302533.2425703/94‑1 (MQ=60)

                                                                              TGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATAT                  <  SRR4302533.3214242/94‑1 (MQ=60)

                                                                              TGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTAACATCCTGACTATCTCGCTGCTGATGAATAT                  <  SRR4302533.3178908/94‑1 (MQ=60)

                                                                               GCTGAAGCAGACGGG‑GCAAGCCATCGAGACGATAGCCGTGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATC                 <  SRR4302533.5154809/94‑1 (MQ=60)

                                                                                CTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCT                <  SRR4302533.648743/94‑1 (MQ=60)

                                                                                 TGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTA               >  SRR4302533.2862603/1‑94 (MQ=60)

                                                                                 TGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTA               >  SRR4302533.3334165/1‑94 (MQ=60)

                                                                                  GAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTAT              >  SRR4302533.2795323/1‑94 (MQ=60)

                                                                                  GAAGCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTAT              <  SRR4302533.1757467/94‑1 (MQ=60)

                                                                                   AATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATA             >  SRR4302533.5595067/1‑94 (MQ=60)

                                                                                    ATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA            <  SRR4302533.1017093/94‑1 (MQ=60)

                                                                                    ATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA            <  SRR4302533.672226/94‑1 (MQ=60)

                                                                                     TCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAC           <  SRR4302533.1249860/94‑1 (MQ=60)

                                                                                      CAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACC          >  SRR4302533.206004/1‑94 (MQ=60)

                                                                                       AGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCG         <  SRR4302533.3076518/94‑1 (MQ=60)

                                                                                          cgGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCG      <  SRR4302533.4527755/92‑1 (MQ=60)

                                                                                          cgGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCG      >  SRR4302533.3652189/3‑94 (MQ=60)

                                                                                            GG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCA    >  SRR4302533.1571726/1‑94 (MQ=60)

                                                                                               GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATG  >  SRR4302533.5063423/1‑94 (MQ=60)

                                                                                               GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATC  >  SRR4302533.5997531/1‑94 (MQ=60)

                                                                                               GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATC  >  SRR4302533.5997530/1‑94 (MQ=60)

ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATC  >  NC_000913/3418747‑3418933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`