Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,582,668	G→A	L93L (TTG→TTA)	yrhB →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,582,668	0	G	A	97.9%	1166.0 / NA	335	L93L (TTG→TTA)	yrhB	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (220/108); minor base C (0/7); total (220/115)
Fisher's exact test for biased strand distribution p-value = 4.97e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 368 total aligned reads displayed.

AGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCG  >  NC_000913/3582578‑3582757

aGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTAcc                                                                                         <  2:3276556/93‑1 (MQ=255)

 gACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTAccc                                                                                        <  2:2635156/93‑1 (MQ=255)

     gtggtgAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGAc                                                                                    <  2:840568/93‑1 (MQ=255)

     gtggtgAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGAc                                                                                    >  2:2794187/1‑93 (MQ=255)

      tggtgAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACa                                                                                   <  1:9607550/93‑1 (MQ=255)

       ggtgAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGCCaa                                                                                  >  1:1206917/1‑93 (MQ=255)

        gtgAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACaaa                                                                                 >  2:5553134/1‑93 (MQ=255)

         tgAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACaaaa                                                                                >  1:8621521/1‑93 (MQ=255)

         tgAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACaaaa                                                                                <  2:9566591/93‑1 (MQ=255)

             attcattcTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGc                                                                            >  2:7740777/1‑93 (MQ=255)

              ttcattcTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAGAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGcc                                                                           >  1:812172/1‑93 (MQ=255)

              ttcattcTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGcc                                                                           >  1:1810500/1‑93 (MQ=255)

               tcattcTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGccc                                                                          >  2:4030353/1‑93 (MQ=255)

                cattcTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCct                                                                         >  2:4519806/1‑93 (MQ=255)

                  ttcTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCctct                                                                       >  1:10019501/1‑93 (MQ=255)

                  ttcTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCctct                                                                       <  2:53396/93‑1 (MQ=255)

                  ttcTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCctct                                                                       >  1:9126858/1‑93 (MQ=255)

                  ttcTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCctct                                                                       >  2:314058/1‑93 (MQ=255)

                  ttcTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACAAAATAAAAAAGGCTCCCTTCGGCTTACCCTGGCAAAATAGCCctct                                                                       <  2:6522633/93‑1 (MQ=255)

                    ctctGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTc                                                                     <  1:4114165/93‑1 (MQ=255)

                     tctGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTcc                                                                    <  2:661558/93‑1 (MQ=255)

                      ctGGGAACGGAAAAACCGCTGGAAGAACATCTACAGGATTACGAAATAAAAAAGGATACCTTCGGCTTACCCTGACAAAATAGCCCTCTTccc                                                                   >  2:2110157/1‑93 (MQ=255)

                       tGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCa                                                                  <  2:3634898/93‑1 (MQ=255)

                       tGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCa                                                                  >  2:1986322/1‑93 (MQ=255)

                         ggAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACg                                                                >  1:7507821/1‑93 (MQ=255)

                             cGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAaga                                                            >  1:4508390/1‑93 (MQ=255)

                             cGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAaga                                                            <  2:7167986/93‑1 (MQ=255)

                               gCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAgg                                                          >  2:3544558/1‑93 (MQ=255)

                                 aaaaCCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGc                                                        >  1:289325/1‑93 (MQ=255)

                                  aaaCCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGcc                                                       >  2:2737468/1‑93 (MQ=255)

                                  aaaCCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGcc                                                       <  1:6078328/93‑1 (MQ=255)

                                  aaaCCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGcc                                                       <  2:6380645/93‑1 (MQ=255)

                                  aaaCCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGcc                                                       >  1:1431397/1‑93 (MQ=255)

                                  aaaCCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGcc                                                       >  2:9936715/1‑93 (MQ=255)

                                    aCCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGc                                                     >  2:1211644/1‑93 (MQ=255)

                                    aCCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGc                                                     >  1:5563466/1‑93 (MQ=255)

                                       gCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTaa                                                  >  1:7153642/1‑93 (MQ=255)

                                        cTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAAc                                                 <  1:6865407/93‑1 (MQ=255)

                                          ggAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCt                                               >  2:9671969/1‑93 (MQ=255)

                                          ggAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCt                                               >  2:7023667/1‑93 (MQ=255)

                                          ggAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCt                                               >  1:8967407/1‑93 (MQ=255)

                                           gaagaaTATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCTGCTAACCtt                                              <  2:5768673/93‑1 (MQ=255)

                                           gaagaaTATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCtt                                              >  1:6615988/1‑93 (MQ=255)

                                            aagaaTATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTa                                             <  1:8425492/93‑1 (MQ=255)

                                            aagaaTATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTa                                             <  2:8503119/93‑1 (MQ=255)

                                            aagaaTATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCACTAACCTTa                                             <  2:6734689/93‑1 (MQ=255)

                                             agaaTATCTACAGGATTACGAAATAAAAAAGGCTCCCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAg                                            <  1:3987383/93‑1 (MQ=255)

                                             agaaTATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAg                                            <  2:8318040/93‑1 (MQ=255)

                                             agaaTATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAg                                            <  2:6173207/93‑1 (MQ=255)

                                             agaaTATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAg                                            <  1:4791788/93‑1 (MQ=255)

                                              gaaTATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGt                                           <  1:8761197/93‑1 (MQ=255)

                                              gaaTATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGt                                           >  2:7578023/1‑93 (MQ=255)

                                              gaaTATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGt                                           >  1:2312879/1‑93 (MQ=255)

                                              gaaTATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGt                                           >  2:344606/1‑93 (MQ=255)

                                               aaTATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTa                                          <  1:9728498/93‑1 (MQ=255)

                                               aaTATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATACCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTa                                          <  1:192956/93‑1 (MQ=255)

                                                atatCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTAc                                         <  1:1523320/93‑1 (MQ=255)

                                                 tatCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTAcc                                        >  1:7833405/1‑93 (MQ=255)

                                                 tatCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTAcc                                        <  1:6117266/93‑1 (MQ=255)

                                                  atCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTAccc                                       <  2:4791591/93‑1 (MQ=255)

                                                     tACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccgc                                    >  2:9150000/1‑93 (MQ=255)

                                                     tACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccgc                                    >  2:3879669/1‑93 (MQ=255)

                                                      aCAGGATTAGGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccgcc                                   <  2:5430643/93‑1 (MQ=255)

                                                       cAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccgccg                                  >  1:1071813/1‑93 (MQ=255)

                                                       cAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCccgccg                                  >  1:5744840/1‑93 (MQ=255)

                                                        aGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGt                                 >  1:3042840/1‑93 (MQ=255)

                                                        aGGATTACGAAAAAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTCCCCCGCCGt                                 <  1:3550121/93‑1 (MQ=255)

                                                         ggATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGtt                                >  2:2256644/1‑93 (MQ=255)

                                                         ggATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGtt                                >  1:8338412/1‑93 (MQ=255)

                                                         ggATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGtt                                >  2:1879128/1‑93 (MQ=255)

                                                            ttACGAAAAAAAAAAGGCTCCCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTaaa                             <  2:7858356/93‑1 (MQ=255)

                                                             tACGAAATAAAAAAGGCTCCCTTCGGCTTCCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAat                            <  1:5128934/93‑1 (MQ=255)

                                                             tACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAat                            >  1:8495369/1‑93 (MQ=255)

                                                              aCGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAatc                           >  2:8063044/1‑93 (MQ=255)

                                                                gAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAatcat                         >  2:9349808/1‑93 (MQ=255)

                                                                gAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAatcat                         >  1:4668734/1‑93 (MQ=255)

                                                                 aaaTAAAAAAGGCTCCCTTCGGCTTCCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTCCCCCGCCGTTAAatcatc                        <  1:2171737/93‑1 (MQ=255)

                                                                 aaaTAAAAAAGGCTCCCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAatcatc                        <  2:1744913/93‑1 (MQ=255)

                                                                 aaaTAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAatcatc                        <  2:1432186/93‑1 (MQ=255)

                                                                  aaTAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATcc                       >  1:162739/1‑93 (MQ=255)

                                                                  aaTAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATcc                       >  2:2346182/1‑93 (MQ=255)

                                                                  aaTAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATcc                       >  1:3893714/1‑93 (MQ=255)

                                                                       aaaaGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGa                  >  2:5962778/1‑93 (MQ=255)

                                                                       aaaaGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGa                  >  1:2400087/1‑93 (MQ=255)

                                                                        aaaGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAg                 >  1:6954105/1‑93 (MQ=255)

                                                                         aaGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAgc                >  1:9886213/1‑93 (MQ=255)

                                                                          aGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAgcg               >  2:2210093/1‑93 (MQ=255)

                                                                              tACCTTCGGCTTCCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTACCCTTAGTCCCCCGCCGTTAAATCATCCACCGAGCGCggg           <  2:1293731/93‑1 (MQ=255)

                                                                               cccTTCGCCTTCCCCTAACAAAATCGCCCTCTTCCCACGAAGAGGGCCGCAAACATTAGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGt          <  1:7643755/92‑1 (MQ=255)

                                                                                  ttCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCgg       >  1:6302816/1‑93 (MQ=255)

                                                                                   tgggCTTCCCTTAAAAAAATCCCCTTCTCCCCAGGAAGAGGGCCGCTACCCTTAGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGa      <  2:3717272/91‑1 (MQ=255)

                                                                                   tCGGCTTCCCCTGACAAAATAGCCCTCTCCCCACGAAGAGGGCCGCTACCCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGa      <  1:4304800/93‑1 (MQ=255)

                                                                                   tCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGa      >  2:9841629/1‑93 (MQ=255)

                                                                                   tCGCCTTACCCTGACAAAATAGCTCTCTTCCCACGAAGAGGGCCGCTAACCTTAGCCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGa      <  1:2538200/93‑1 (MQ=255)

                                                                                    cGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGAt     >  1:3274502/1‑93 (MQ=255)

                                                                                     ggCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATg    >  1:8164702/1‑93 (MQ=255)

                                                                                     gccTTGCCCTGAAAAAATACCCCTCTCCCCGCGAAGAGGGCCGCTAACCTTAGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATg    <  2:8255088/91‑1 (MQ=255)

                                                                                      gCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATgc   >  1:9495918/1‑93 (MQ=255)

                                                                                      gCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATgc   <  2:1780289/93‑1 (MQ=255)

                                                                                      gCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATgc   >  1:3647132/1‑93 (MQ=255)

AGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCG  >  NC_000913/3582578‑3582757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAAGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGT  >  NC_000913/3582576‑3582761

AAAGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTAC                                                                                              >  SRR4302540.5867339/1‑94 (MQ=60)

 AAGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACC                                                                                             <  SRR4302540.9655527/94‑1 (MQ=60)

  AGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCC                                                                                            >  SRR4302540.4226406/1‑94 (MQ=60)

  AGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCC                                                                                            >  SRR4302540.4226405/1‑94 (MQ=60)

  AGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCC                                                                                            >  SRR4302540.4226402/1‑94 (MQ=60)

  AGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCC                                                                                            <  SRR4302540.8060040/94‑1 (MQ=60)

  AGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCC                                                                                            >  SRR4302540.6148645/1‑94 (MQ=60)

  AGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCC                                                                                            >  SRR4302540.6484783/1‑94 (MQ=60)

  AGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCC                                                                                            >  SRR4302540.6148646/1‑94 (MQ=60)

   GACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCT                                                                                           <  SRR4302540.2221074/94‑1 (MQ=60)

   GACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCT                                                                                           <  SRR4302540.78240/94‑1 (MQ=60)

   GACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCT                                                                                           >  SRR4302540.1256677/1‑94 (MQ=60)

   AACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCT                                                                                           <  SRR4302540.2711127/94‑1 (MQ=60)

    ACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACTGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTG                                                                                          >  SRR4302540.8837833/1‑94 (MQ=60)

    ACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTG                                                                                          <  SRR4302540.1682707/94‑1 (MQ=60)

     CAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGA                                                                                         >  SRR4302540.3977862/1‑94 (MQ=60)

     CAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGA                                                                                         >  SRR4302540.300809/1‑94 (MQ=60)

      AGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGAC                                                                                        >  SRR4302540.8000480/1‑94 (MQ=60)

      AGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGAC                                                                                        <  SRR4302540.3132879/94‑1 (MQ=60)

      AGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGAA                                                                                        >  SRR4302540.147986/1‑94 (MQ=60)

       GTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACA                                                                                       >  SRR4302540.7006252/1‑94 (MQ=60)

        TGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGCCAA                                                                                      >  SRR4302540.1219304/1‑94 (MQ=60)

        TGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAA                                                                                      >  SRR4302540.9106415/1‑94 (MQ=60)

        TGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAA                                                                                      <  SRR4302540.9720854/94‑1 (MQ=60)

        TGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAA                                                                                      >  SRR4302540.1219305/1‑94 (MQ=60)

          GTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAA                                                                                    >  SRR4302540.8721670/1‑94 (MQ=60)

           TGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAAT                                                                                   <  SRR4302540.7262418/94‑1 (MQ=60)

             AAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAG                                                                                 <  SRR4302540.221332/94‑1 (MQ=60)

             AAATTCATTCTATGGGAACGGCAAACCCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTCCCTTCGGCTTACCCTGACAAAATAG                                                                                 <  SRR4302540.221331/94‑1 (MQ=60)

              AATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGC                                                                                <  SRR4302540.1783659/94‑1 (MQ=60)

               ATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAGAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCC                                                                               >  SRR4302540.820796/1‑94 (MQ=60)

               ATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCC                                                                               >  SRR4302540.8706017/1‑94 (MQ=60)

               ATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCC                                                                               >  SRR4302540.1830242/1‑94 (MQ=60)

                  CATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTC                                                                            >  SRR4302540.8431451/1‑94 (MQ=60)

                   ATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCT                                                                           >  SRR4302540.6908806/1‑94 (MQ=60)

                   ATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCT                                                                           >  SRR4302540.10136113/1‑94 (MQ=60)

                   ATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCT                                                                           >  SRR4302540.9236566/1‑94 (MQ=60)

                   ATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCT                                                                           <  SRR4302540.8502992/94‑1 (MQ=60)

                   ATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCT                                                                           >  SRR4302540.10136114/1‑94 (MQ=60)

                    TTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTT                                                                          >  SRR4302540.8568479/1‑94 (MQ=60)

                    TTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTT                                                                          <  SRR4302540.9971709/94‑1 (MQ=60)

                    TTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTT                                                                          >  SRR4302540.9191644/1‑94 (MQ=60)

                    TTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTT                                                                          <  SRR4302540.3003086/94‑1 (MQ=60)

                     TCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTC                                                                         >  SRR4302540.2627346/1‑94 (MQ=60)

                     TCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTC                                                                         <  SRR4302540.7405098/94‑1 (MQ=60)

                      CTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCC                                                                        <  SRR4302540.4158587/94‑1 (MQ=60)

                      CTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCC                                                                        <  SRR4302540.4788410/94‑1 (MQ=60)

                      CTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCC                                                                        >  SRR4302540.5768427/1‑94 (MQ=60)

                        CTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCC                                                                      >  SRR4302540.4792794/1‑94 (MQ=60)

                        CTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCA                                                                      >  SRR4302540.1565109/1‑94 (MQ=60)

                         TGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCAC                                                                     <  SRR4302540.4070440/94‑1 (MQ=60)

                         TGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCAC                                                                     <  SRR4302540.7124780/94‑1 (MQ=60)

                         TGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCAC                                                                     >  SRR4302540.2337992/1‑94 (MQ=60)

                         TGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTCACCCTGACAAAATAGCCCTCTTCCCAC                                                                     <  SRR4302540.7124782/94‑1 (MQ=60)

                          GGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACG                                                                    <  SRR4302540.7197215/94‑1 (MQ=60)

                          GGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACG                                                                    >  SRR4302540.7591737/1‑94 (MQ=60)

                            GAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAA                                                                  >  SRR4302540.7022537/1‑94 (MQ=60)

                              ACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGA                                                                <  SRR4302540.3680692/94‑1 (MQ=60)

                              ACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGA                                                                >  SRR4302540.4557243/1‑94 (MQ=60)

                               CGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAG                                                               >  SRR4302540.3436762/1‑94 (MQ=60)

                                 GCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGG                                                             <  SRR4302540.1195951/94‑1 (MQ=60)

                                  CAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGC                                                            <  SRR4302540.817127/94‑1 (MQ=60)

                                  CAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGC                                                            >  SRR4302540.292184/1‑94 (MQ=60)

                                   AAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCC                                                           >  SRR4302540.1446908/1‑94 (MQ=60)

                                   AAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCC                                                           >  SRR4302540.1860692/1‑94 (MQ=60)

                                    AAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCG                                                          >  SRR4302540.5723790/1‑94 (MQ=60)

                                    AAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCG                                                          >  SRR4302540.236095/1‑94 (MQ=60)

                                    AAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCG                                                          >  SRR4302540.2142769/1‑94 (MQ=60)

                                    AAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCG                                                          >  SRR4302540.8734722/1‑94 (MQ=60)

                                    AAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCG                                                          <  SRR4302540.6145919/94‑1 (MQ=60)

                                    AAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCG                                                          >  SRR4302540.9720155/1‑94 (MQ=60)

                                    AAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCG                                                          >  SRR4302540.3573770/1‑94 (MQ=60)

                                     AACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGC                                                         >  SRR4302540.5624728/1‑94 (MQ=60)

                                      ACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTCCCTTCGGCTTCCCCTGACAAAATAGCCCTCTCCCCACGAAGAGGGCCGCT                                                        <  SRR4302540.3926496/94‑1 (MQ=60)

                                      ACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCT                                                        <  SRR4302540.8664372/94‑1 (MQ=60)

                                       CCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTA                                                       >  SRR4302540.1174289/1‑94 (MQ=60)

                                       CCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGACGGGCGCTA                                                       >  SRR4302540.1174295/1‑94 (MQ=60)

                                        CGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAA                                                      >  SRR4302540.7233368/1‑94 (MQ=60)

                                          CTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGCACACGGGCGCTAACC                                                    >  SRR4302540.5300187/1‑94 (MQ=60)

                                          CTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACC                                                    <  SRR4302540.6941500/94‑1 (MQ=60)

                                          CTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACC                                                    >  SRR4302540.4859947/1‑94 (MQ=60)

                                           TGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCT                                                   >  SRR4302540.9073733/1‑94 (MQ=60)

                                           TGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCT                                                   >  SRR4302540.9982515/1‑94 (MQ=60)

                                            GGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT                                                  >  SRR4302540.7831515/1‑94 (MQ=60)

                                            GGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT                                                  >  SRR4302540.3294509/1‑94 (MQ=60)

                                            GGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT                                                  <  SRR4302540.3447443/94‑1 (MQ=60)

                                            GGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT                                                  >  SRR4302540.2838008/1‑94 (MQ=60)

                                            GGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT                                                  >  SRR4302540.6689257/1‑94 (MQ=60)

                                            GGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT                                                  <  SRR4302540.9813710/94‑1 (MQ=60)

                                            GGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT                                                  <  SRR4302540.9841577/94‑1 (MQ=60)

                                             GAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTA                                                 >  SRR4302540.5023502/1‑94 (MQ=60)

                                             GAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTA                                                 >  SRR4302540.9098683/1‑94 (MQ=60)

                                              AAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAG                                                <  SRR4302540.8523296/94‑1 (MQ=60)

                                              AAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAG                                                >  SRR4302540.8219068/1‑94 (MQ=60)

                                              AAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAG                                                <  SRR4302540.8933542/94‑1 (MQ=60)

                                              AAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAG                                                <  SRR4302540.8933543/94‑1 (MQ=60)

                                              AAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAG                                                >  SRR4302540.6221849/1‑94 (MQ=60)

                                               AGAATATCTACAGGATTACGAAATAAAAAAGGCTCCCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGT                                               <  SRR4302540.4030314/94‑1 (MQ=60)

                                               AGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGT                                               <  SRR4302540.6812017/94‑1 (MQ=60)

                                               AGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGT                                               >  SRR4302540.2337774/1‑94 (MQ=60)

                                               AGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGT                                               <  SRR4302540.4843037/94‑1 (MQ=60)

                                               AGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGT                                               <  SRR4302540.6812021/94‑1 (MQ=60)

                                               AGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGT                                               <  SRR4302540.3087822/94‑1 (MQ=60)

                                                GAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTA                                              <  SRR4302540.1912687/94‑1 (MQ=60)

                                                GAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTA                                              <  SRR4302540.8862784/94‑1 (MQ=60)

                                                GAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTA                                              >  SRR4302540.5535108/1‑94 (MQ=60)

                                                GAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTA                                              <  SRR4302540.9302275/94‑1 (MQ=60)

                                                GAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGACCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTA                                              >  SRR4302540.4774282/1‑94 (MQ=60)

                                                 AATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTAC                                             >  SRR4302540.2429175/1‑94 (MQ=60)

                                                 AATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTAC                                             <  SRR4302540.8828350/94‑1 (MQ=60)

                                                 AATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTAC                                             <  SRR4302540.9842747/94‑1 (MQ=60)

                                                 AATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATACCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTAC                                             <  SRR4302540.194877/94‑1 (MQ=60)

                                                  ATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACC                                            <  SRR4302540.1540180/94‑1 (MQ=60)

                                                  ATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACC                                            >  SRR4302540.5614548/1‑94 (MQ=60)

                                                  ATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACC                                            >  SRR4302540.4409850/1‑94 (MQ=60)

                                                  ATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACC                                            >  SRR4302540.7924933/1‑94 (MQ=60)

                                                   TATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCC                                           <  SRR4302540.4450388/94‑1 (MQ=60)

                                                   TATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCC                                           <  SRR4302540.6185392/94‑1 (MQ=60)

                                                    ATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCC                                          <  SRR4302540.9384848/94‑1 (MQ=60)

                                                    ATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCC                                          >  SRR4302540.7850287/1‑94 (MQ=60)

                                                       TACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACACCGCC                                       >  SRR4302540.3797506/1‑94 (MQ=60)

                                                        ACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCG                                      >  SRR4302540.6485802/1‑94 (MQ=60)

                                                        ACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCG                                      >  SRR4302540.1082749/1‑94 (MQ=60)

                                                        ACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCG                                      >  SRR4302540.5808181/1‑94 (MQ=60)

                                                        ACAGGATTACGAAATAAAAAACGCTACCTTCGGCTTACCCTGACAATATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAACACCACGCCG                                      >  SRR4302540.6485803/1‑94 (MQ=60)

                                                         CAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGT                                     >  SRR4302540.3076232/1‑94 (MQ=60)

                                                         CAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGT                                     >  SRR4302540.6317544/1‑94 (MQ=60)

                                                          AGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTT                                    >  SRR4302540.8435197/1‑94 (MQ=60)

                                                          AGGATTACGAAAAAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTCCCCCGCCGTT                                    <  SRR4302540.3588907/94‑1 (MQ=60)

                                                           GGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTA                                   >  SRR4302540.9464819/1‑94 (MQ=60)

                                                           GGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTA                                   >  SRR4302540.7706180/1‑94 (MQ=60)

                                                           GGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTA                                   >  SRR4302540.8293021/1‑94 (MQ=60)

                                                           GGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTA                                   >  SRR4302540.1701047/1‑94 (MQ=60)

                                                           GGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACAAAGGGGGCCGCTAACCTTAGTACCCCGCCGTTA                                   <  SRR4302540.1570771/94‑1 (MQ=60)

                                                            GATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAA                                  >  SRR4302540.2183245/1‑94 (MQ=60)

                                                             ATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAA                                 >  SRR4302540.8426988/1‑94 (MQ=60)

                                                             ATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAA                                 >  SRR4302540.2442641/1‑94 (MQ=60)

                                                              TTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAAT                                <  SRR4302540.5168021/94‑1 (MQ=60)

                                                              TTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAAT                                >  SRR4302540.8504803/1‑94 (MQ=60)

                                                              TTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAAT                                >  SRR4302540.8594086/1‑94 (MQ=60)

                                                              TTACGAAAAAAAAAAGGCTCCCTTCGGCTTACCCGGAAAAAATGCCCTTCTTCCCAGGAAGAGGGCCGCTACCCTTAGTACCCCGCCGTTAAAT                                <  SRR4302540.3833504/94‑1 (MQ=42)

                                                               TACGAAATAAAAAAGGCTCCCTTCGGCTTCCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATC                               <  SRR4302540.5184487/94‑1 (MQ=60)

                                                               TACAAAAAAAAAAAGGCTCCCTTGGGTTTCCCCAGACAAAATAGCCCTCTCCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATC                               <  SRR4302540.9017437/94‑1 (MQ=60)

                                                                ACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCA                              >  SRR4302540.3751780/1‑94 (MQ=60)

                                                                 CGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCAT                             >  SRR4302540.4718705/1‑94 (MQ=60)

                                                                 CGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCAT                             >  SRR4302540.2535137/1‑94 (MQ=60)

                                                                  GAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATC                            >  SRR4302540.769644/1‑94 (MQ=60)

                                                                   AAATAAAAAAGGCTCCCTTCGGCTTCCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTCCCCCGCCGTTAAATCATCC                           <  SRR4302540.2195155/94‑1 (MQ=60)

                                                                   AAATAAAAAAGGCTACCTTCGGCTTCCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTCCCCCGCCGTTAAATCATCC                           <  SRR4302540.6080278/94‑1 (MQ=60)

                                                                   AAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCC                           >  SRR4302540.164371/1‑94 (MQ=60)

                                                                   AAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCC                           >  SRR4302540.3935978/1‑94 (MQ=60)

                                                                   AAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCC                           >  SRR4302540.7562467/1‑94 (MQ=60)

                                                                    AATAAAAAAGGCTCCCTTCGGCTTCCCCTGACAAAATAGCCCTCTCCCCACGAAGAGGGCCGCTAACCTTAGTCCCCCGCCGTTAAATCATCCA                          <  SRR4302540.8454768/94‑1 (MQ=60)

                                                                    AATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCA                          >  SRR4302540.2182963/1‑94 (MQ=60)

                                                                      TAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACC                        >  SRR4302540.5901684/1‑94 (MQ=60)

                                                                      AAAAAAATGCTACTTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCGCGAAGAGGCCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACC                        <  SRR4302540.6245068/94‑1 (MQ=60)

                                                                      AAAAAAAGGCTACCTTCGGCTTCCCATGAAAAAATAGCCCTCTTCCCATGAGGAGGGCTGCTAGCTTTAGTACCCCGCCGTTAAATCATCCACC                        <  SRR4302540.6361348/94‑1 (MQ=60)

                                                                        AAAAGGGCTACCTTCGGCTTACCCTGACAAAATACCCCTCTGCCCACGAAGAGGGCCGCTAACCTTAGTCCCCCGCCGTTAAATCATCCACCGA                      <  SRR4302540.158561/94‑1 (MQ=60)

                                                                        AAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGA                      >  SRR4302540.2425965/1‑94 (MQ=60)

                                                                        AAAAAGCCTCCTTTCGGCTTACCCTGACAAAATAGCCCTCTCCCCACGAAGAGGGCCGCTAACCTTAGTCCCCCGCCGTTAAATCATCCACCGA                      <  SRR4302540.1479598/94‑1 (MQ=60)

                                                                        AAAAAGCCTCCCTTCGGCTTACCCTGACAAAATAGCCCTCTCCCCACGAAGAGGGCCGCTAACCTTAGTCCCCCGCCGTTAAATCATCCACCGA                      <  SRR4302540.8558990/94‑1 (MQ=60)

                                                                        AAAAAGCCTACCTTCGGCTTCCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTACCCTTAGTACCCCGCCGTTAAATCATCCACCGA                      <  SRR4302540.14958/94‑1 (MQ=60)

                                                                         AAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAG                     >  SRR4302540.7031471/1‑94 (MQ=60)

                                                                          AAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGC                    >  SRR4302540.10001651/1‑94 (MQ=60)

                                                                          AAAGCCTCCCTTCGGCTTCCCCTGACAAAATAGCCCTCTCCCCACGAAGAGGGCCGCTAACCTTAGTCCCCCGCCGTTAAATCATCCACCGAGC                    <  SRR4302540.3990517/94‑1 (MQ=60)

                                                                           AAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCG                   >  SRR4302540.3989868/1‑94 (MQ=60)

                                                                            AGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGC                  >  SRR4302540.4705645/1‑94 (MQ=60)

                                                                            AGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGC                  >  SRR4302540.4705646/1‑94 (MQ=60)

                                                                              GCTCCCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTCCCCCGCCGTTAAATCATCCACCGAGCGCGG                <  SRR4302540.3633899/94‑1 (MQ=60)

                                                                               CTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGG               >  SRR4302540.9666145/1‑94 (MQ=60)

                                                                                TCCCTTGGGCTTCCCCTGACAAAACAGCCCTCTTCCCAGGAAGGGGGCCCCTAACCTTAGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGT              <  SRR4302540.2748171/94‑1 (MQ=60)

                                                                                 CCCTTCGCCTTCCCCTGACAAAATGGCCCTTCCCCCGCGAAGAGGGCCGTTAACATTAGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTC             <  SRR4302540.7729784/94‑1 (MQ=40)

                                                                                 CCCTTCGCCTTCCCCTAACAAAATCGCCCTCTTCCCACGAAGAGGGCCGCAAACATTAGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTC             <  SRR4302540.7729785/94‑1 (MQ=60)

                                                                                 ACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTC             >  SRR4302540.4504458/1‑94 (MQ=60)

                                                                                 ACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTC             >  SRR4302540.4147945/1‑94 (MQ=60)

                                                                                   CTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGG           >  SRR4302540.6373004/1‑94 (MQ=60)

                                                                                    TTCGGCTTCCCCTGACAAAATACCCCTCTTCCCACGAAGGGGGCCGCTACCCTTAGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGA          <  SRR4302540.6163239/94‑1 (MQ=60)

                                                                                     TCGGCTTCCCCTGACAAAATAGCCCTCTCCCCACGAAGAGGGCGGCTAACCTGAGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGAT         <  SRR4302540.9791655/94‑1 (MQ=60)

                                                                                     TCGGCTTCCCCTGACAAAATAGCCCTCTCCCCACGAAGAGGGCCGCTACCCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGAT         <  SRR4302540.4351655/94‑1 (MQ=60)

                                                                                     TCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGAT         >  SRR4302540.5896793/1‑94 (MQ=60)

                                                                                     TCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGAT         >  SRR4302540.3310253/1‑94 (MQ=60)

                                                                                     TCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGAT         >  SRR4302540.1381090/1‑94 (MQ=60)

                                                                                     TCGGCTCCCCCTGACAAAATACCCCTCTCCCCACGAAGAGGGCCGTTAACCTGAGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGAT         <  SRR4302540.10142489/94‑1 (MQ=60)

                                                                                     TCGCCTTACCCTGACAAAATAGCTCTCTTCCCACGAAGAGGGCCGCTAACCTTAGCCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGAT         <  SRR4302540.2565572/94‑1 (MQ=60)

                                                                                      CGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATG        >  SRR4302540.8255225/1‑94 (MQ=60)

                                                                                      CGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATG        >  SRR4302540.8259510/1‑94 (MQ=60)

                                                                                       GGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGC       >  SRR4302540.3687083/1‑94 (MQ=60)

                                                                                       GGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGC       >  SRR4302540.9950334/1‑94 (MQ=60)

                                                                                       GGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGC       >  SRR4302540.9608458/1‑94 (MQ=60)

                                                                                        GCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCG      >  SRR4302540.8698192/1‑94 (MQ=60)

                                                                                         CTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGGGGGGCGGATGCGC     >  SRR4302540.1961898/1‑94 (MQ=60)

                                                                                         CTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGC     >  SRR4302540.6808934/1‑94 (MQ=60)

                                                                                         CTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGC     >  SRR4302540.3981136/1‑94 (MQ=60)

                                                                                         CTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGC     >  SRR4302540.6808933/1‑94 (MQ=60)

                                                                                          TTCCCCTGAAAAAATACCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCC    <  SRR4302540.7817956/94‑1 (MQ=60)

                                                                                           TACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCG   >  SRR4302540.4057812/1‑94 (MQ=60)

                                                                                           TACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGGCGGATGCGCCG   >  SRR4302540.3075032/1‑94 (MQ=60)

                                                                                            ACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGT  >  SRR4302540.3145707/1‑94 (MQ=60)

AAAGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAACCGCTGGAAGAATATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTTAGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGT  >  NC_000913/3582576‑3582761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`