Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,621,415 T→C intergenic (+2/‑594) yhhH → / → yhhI hypothetical protein/putative receptor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,621,4150TC99.3% 1893.0 / ‑1.0 578intergenic (+2/‑594)yhhH/yhhIhypothetical protein/putative receptor
Reads supporting (aligned to +/- strand):  ref base T (0/4);  new base C (282/291);  total (283/295)
Fisher's exact test for biased strand distribution p-value = 1.24e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01

Only 100 of 582 total aligned reads displayed.

TTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATG  >  NC_000913/3621325‑3621505
                                                                                          |                                                                                          
ttCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCAt                                                                                          >  1:6051122/1‑93 (MQ=255)
ttCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATAGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCAt                                                                                          >  1:5609072/1‑93 (MQ=255)
   aCTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTa                                                                                       >  2:3796132/1‑93 (MQ=255)
   aCTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTa                                                                                       >  2:6503059/1‑93 (MQ=255)
   aCTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTa                                                                                       <  1:3321478/93‑1 (MQ=255)
    cTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTaa                                                                                      <  1:202292/93‑1 (MQ=255)
    cTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTaa                                                                                      <  2:6705298/93‑1 (MQ=255)
    cTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTaa                                                                                      <  1:4680150/93‑1 (MQ=255)
    cTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTaa                                                                                      >  2:7035242/1‑93 (MQ=255)
      cAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAgg                                                                                    >  2:890218/1‑93 (MQ=255)
       cggccAAATTGGTTGTGGGGTTTTTATTATAAGAATAGGGAAAAAAGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGa                                                                                   <  1:969504/90‑1 (MQ=255)
       aGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGa                                                                                   <  2:8283407/93‑1 (MQ=255)
           cAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAAt                                                                               <  1:5204955/93‑1 (MQ=255)
             aaTTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCa                                                                             >  1:5773352/1‑93 (MQ=255)
              aTTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCaa                                                                            >  1:592884/1‑93 (MQ=255)
              aTTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCaa                                                                            >  2:4843641/1‑93 (MQ=255)
                tGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAAc                                                                          <  2:9196271/93‑1 (MQ=255)
                 gCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACa                                                                         <  1:9881323/93‑1 (MQ=255)
                 gCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACa                                                                         <  1:1750649/93‑1 (MQ=255)
                   tggtggGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATc                                                                       >  2:4239389/1‑93 (MQ=255)
                     gtggGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCgt                                                                     >  1:2533491/1‑93 (MQ=255)
                      tggGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCgtg                                                                    >  1:6559181/1‑93 (MQ=255)
                      tggGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCgtg                                                                    >  1:8695336/1‑93 (MQ=255)
                        gggTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGtgtg                                                                  <  1:8501319/93‑1 (MQ=255)
                        gggTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGtgtg                                                                  >  2:19795/1‑93 (MQ=255)
                         ggTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTACGGATAATCAAACATCGTGTgc                                                                 >  1:3471475/1‑93 (MQ=255)
                          gTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTgcg                                                                >  2:8660809/1‑93 (MQ=255)
                           tttttATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTgcgc                                                               <  1:9029752/93‑1 (MQ=255)
                           tttttATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTgcgc                                                               <  2:2206658/93‑1 (MQ=255)
                            ttttATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCt                                                              >  2:9669899/1‑93 (MQ=255)
                             tttATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTg                                                             >  2:3718856/1‑93 (MQ=255)
                              ttattaTAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGa                                                            <  1:3150226/93‑1 (MQ=255)
                                attatAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATg                                                          <  2:8040839/93‑1 (MQ=255)
                                 ttatAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATgg                                                         >  1:6401859/1‑93 (MQ=255)
                                   ataGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCACACATCGTGTGCGCGGATgcaa                                                       >  1:5686471/1‑90 (MQ=255)
                                    taGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCag                                                      >  2:2399274/1‑93 (MQ=255)
                                    taGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCag                                                      >  1:1925035/1‑93 (MQ=255)
                                     aGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCaga                                                     <  1:7870802/93‑1 (MQ=255)
                                       aaaTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGt                                                   >  2:9828863/1‑93 (MQ=255)
                                       aaaTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGt                                                   <  2:4656930/93‑1 (MQ=255)
                                        aaTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTa                                                  >  2:3588917/1‑93 (MQ=255)
                                        aaTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTa                                                  >  2:1512642/1‑93 (MQ=255)
                                          tAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAgg                                                <  2:4400672/93‑1 (MQ=255)
                                          tAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAgg                                                >  2:6410003/1‑93 (MQ=255)
                                          tAGGCAAAAATGATGGGAGAATTCCGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAgg                                                <  2:5887442/93‑1 (MQ=255)
                                            ggCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTg                                              >  1:9159297/1‑93 (MQ=255)
                                              cAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTgga                                            <  2:6912052/93‑1 (MQ=255)
                                              cAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTgga                                            <  2:7126535/93‑1 (MQ=255)
                                              cAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTgga                                            <  1:1643474/93‑1 (MQ=255)
                                                aaaaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTggagg                                          <  1:7754007/93‑1 (MQ=255)
                                                 aaaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTggagga                                         <  2:3110103/93‑1 (MQ=255)
                                                 aaaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTggagga                                         <  2:1726846/93‑1 (MQ=255)
                                                  aaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGAc                                        >  1:3699973/1‑93 (MQ=255)
                                                   atgatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACt                                       >  1:1189444/1‑93 (MQ=255)
                                                    tgatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTc                                      <  1:10036168/93‑1 (MQ=255)
                                                    tgatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTc                                      >  1:7244447/1‑93 (MQ=255)
                                                     gatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTcc                                     >  2:2626943/1‑93 (MQ=255)
                                                     gatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTcc                                     <  2:3213631/93‑1 (MQ=255)
                                                     gatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTcc                                     <  2:6784978/93‑1 (MQ=255)
                                                      attggAGAATTCTGAATTTTGGCCACGGAAAATAAGCAGGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCa                                    <  1:8275322/90‑1 (MQ=255)
                                                      atgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGTTGGCAGAGTAGGTGGAGGACTCCa                                    >  1:7498970/1‑93 (MQ=255)
                                                        gggAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGa                                  >  2:1297033/1‑93 (MQ=255)
                                                        gggAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGa                                  <  2:6177464/93‑1 (MQ=255)
                                                         ggATAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATAAAGCAGCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGag                                 <  2:4123732/93‑2 (MQ=255)
                                                         ggAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGAc                                 <  2:4929197/93‑1 (MQ=255)
                                                         ggAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGAc                                 >  1:2239288/1‑93 (MQ=255)
                                                          gagaATTCTGAATTTTGGCCACGCAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACa                                <  1:4836473/93‑1 (MQ=255)
                                                           agaATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAg                               >  1:3936635/1‑93 (MQ=255)
                                                           agaATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAg                               >  2:7690628/1‑93 (MQ=255)
                                                            gaATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGt                              >  2:3022367/1‑93 (MQ=255)
                                                             aaTTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTc                             >  2:10037662/1‑93 (MQ=255)
                                                              aTTCTGAATTTTGGCCACGGAAACTAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCa                            <  2:5518530/93‑1 (MQ=255)
                                                              aTTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCa                            <  2:2755649/93‑1 (MQ=255)
                                                              aTTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCa                            <  1:505004/93‑1 (MQ=255)
                                                               ttCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCaa                           >  2:9307948/1‑93 (MQ=255)
                                                                tCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCaaa                          <  1:4229103/93‑1 (MQ=255)
                                                                tCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCaaa                          <  2:1240575/93‑1 (MQ=255)
                                                                tCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCaaa                          >  2:3917604/1‑93 (MQ=255)
                                                                 cTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAAc                         >  2:8847767/1‑93 (MQ=255)
                                                                   gAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGa                       <  2:2911198/93‑1 (MQ=255)
                                                                   gAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGa                       <  1:8032989/93‑1 (MQ=255)
                                                                     aTTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATa                     <  2:7912474/93‑1 (MQ=255)
                                                                      ttttGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAg                    >  1:9520727/1‑93 (MQ=255)
                                                                      ttttGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAg                    <  2:7543895/93‑1 (MQ=255)
                                                                       tttGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGa                   >  1:3802657/1‑93 (MQ=255)
                                                                        ttGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGaa                  <  2:5290552/93‑1 (MQ=255)
                                                                          ggCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGaaaa                <  1:6774380/93‑1 (MQ=255)
                                                                          ggCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGaaaa                <  2:8486373/93‑1 (MQ=255)
                                                                            ccACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAg              >  2:8564065/1‑93 (MQ=255)
                                                                                ggAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAg          >  1:2927685/1‑93 (MQ=255)
                                                                                 gAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGc         >  1:4447346/1‑93 (MQ=255)
                                                                                 gAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGc         <  1:7039706/93‑1 (MQ=255)
                                                                                 gAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGc         >  1:3542943/1‑93 (MQ=255)
                                                                                 gAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGc         >  1:5312468/1‑93 (MQ=255)
                                                                                    aaTAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCtt      >  1:9792898/1‑93 (MQ=255)
                                                                                     aTAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCttt     >  1:5477467/1‑93 (MQ=255)
                                                                                      tAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTa    <  1:884349/93‑1 (MQ=255)
                                                                                      tAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTa    <  1:1443803/93‑1 (MQ=255)
                                                                                      tAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTa    <  2:2054926/93‑1 (MQ=255)
                                                                                        aGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATg  <  1:2815256/93‑1 (MQ=255)
                                                                                          |                                                                                          
TTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATG  >  NC_000913/3621325‑3621505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 312 total aligned reads displayed.
CCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAG  >  NC_000913/3621322‑3621508
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CCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGC                                                                                               <  SRR4302540.3320968/94‑1 (MQ=60)
 CATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCA                                                                                              <  SRR4302540.4346020/94‑1 (MQ=60)
 CATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCA                                                                                              <  SRR4302540.1272434/94‑1 (MQ=60)
 CATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCA                                                                                              <  SRR4302540.1623725/94‑1 (MQ=60)
  ATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCAT                                                                                             >  SRR4302540.6118367/1‑94 (MQ=60)
  ATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCAT                                                                                             <  SRR4302540.1655616/94‑1 (MQ=60)
  ATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCAT                                                                                             >  SRR4302540.549065/1‑94 (MQ=60)
  ATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCAT                                                                                             >  SRR4302540.5320624/1‑94 (MQ=60)
   TTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATG                                                                                            <  SRR4302540.1127092/94‑1 (MQ=60)
   TTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATG                                                                                            >  SRR4302540.5886356/1‑94 (MQ=60)
   TTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATG                                                                                            <  SRR4302540.3793962/94‑1 (MQ=60)
    TCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGT                                                                                           >  SRR4302540.8240946/1‑94 (MQ=60)
    TCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGT                                                                                           >  SRR4302540.8808234/1‑94 (MQ=60)
    TCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGT                                                                                           >  SRR4302540.3953246/1‑94 (MQ=60)
    TCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGT                                                                                           <  SRR4302540.3613844/94‑1 (MQ=60)
     CACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTA                                                                                          >  SRR4302540.3821066/1‑94 (MQ=60)
     CACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTA                                                                                          <  SRR4302540.9823829/94‑1 (MQ=60)
      ACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAA                                                                                         >  SRR4302540.9052588/1‑94 (MQ=60)
      ACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAA                                                                                         <  SRR4302540.4391444/94‑1 (MQ=60)
      ACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAA                                                                                         <  SRR4302540.1382765/94‑1 (MQ=60)
      ACTCAGACCAAATT‑‑TGTTGTGGGTTTTATTATAGAGAAAGAGACAAAAGTGATGGGAGAATTCTGAA‑‑TTGGCCACGGAAAATAAGCATGTAAGG                                                                                       <  SRR4302540.3634487/94‑1 (MQ=21)
       CTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAG                                                                                        <  SRR4302540.4730217/94‑1 (MQ=60)
       CTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAG                                                                                        <  SRR4302540.204287/94‑1 (MQ=60)
       CTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAG                                                                                        <  SRR4302540.6024984/94‑1 (MQ=60)
       CTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAG                                                                                        >  SRR4302540.3029698/1‑94 (MQ=60)
        TCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGG                                                                                       >  SRR4302540.8279753/1‑94 (MQ=60)
        TCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGG                                                                                       <  SRR4302540.352484/94‑1 (MQ=60)
        TCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGG                                                                                       <  SRR4302540.2944765/94‑1 (MQ=60)
          AGACCAAATTTCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGAT                                                                                     <  SRR4302540.6097383/94‑1 (MQ=60)
          AGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGAT                                                                                     >  SRR4302540.4912784/1‑94 (MQ=60)
           GACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATA                                                                                    >  SRR4302540.9201317/1‑94 (MQ=60)
           GACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATA                                                                                    >  SRR4302540.2567792/1‑94 (MQ=60)
             CCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAAT                                                                                  <  SRR4302540.100529/94‑1 (MQ=60)
             CCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAAT                                                                                  <  SRR4302540.4279621/94‑1 (MQ=60)
              CAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATC                                                                                 >  SRR4302540.64696/1‑94 (MQ=60)
              CAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATC                                                                                 <  SRR4302540.5261651/94‑1 (MQ=60)
               AAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCA                                                                                >  SRR4302540.5837123/1‑94 (MQ=60)
                AATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAA                                                                               >  SRR4302540.599263/1‑94 (MQ=60)
                 ATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAA                                                                              <  SRR4302540.3508762/94‑1 (MQ=60)
                  TTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAACTAAGCATGTAAGGATAATacaac                                                                             >  SRR4302540.8301548/1‑89 (MQ=60)
                  TTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAAC                                                                             <  SRR4302540.4045532/94‑1 (MQ=60)
                    GCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACAT                                                                           <  SRR4302540.9968622/94‑1 (MQ=60)
                     CTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATC                                                                          <  SRR4302540.1712801/94‑1 (MQ=60)
                     CTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATC                                                                          >  SRR4302540.9211506/1‑94 (MQ=60)
                     CTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAAGAAGCATGTAAGGATAATCAAACATC                                                                          <  SRR4302540.2674626/94‑1 (MQ=60)
                      TGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCG                                                                         <  SRR4302540.6363113/94‑1 (MQ=60)
                       GGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGT                                                                        >  SRR4302540.2560820/1‑94 (MQ=60)
                       GGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGT                                                                        <  SRR4302540.2076398/94‑1 (MQ=60)
                        GTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTG                                                                       >  SRR4302540.6631902/1‑94 (MQ=60)
                        GTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTG                                                                       >  SRR4302540.8796277/1‑94 (MQ=60)
                         TGGGGTTTTTATTAT‑‑AGAAATAGGCATTACTGATGGGAGACTTCTGAATTTTGGCCGCGGATAATAAGCATGTAAGGATAATCAAACATCGTGT                                                                      <  SRR4302540.9025693/94‑1 (MQ=60)
                         TGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGT                                                                      <  SRR4302540.9105078/94‑1 (MQ=60)
                         TGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGT                                                                      >  SRR4302540.7284696/1‑94 (MQ=60)
                          GGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTG                                                                     >  SRR4302540.9703289/1‑94 (MQ=60)
                          GGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTG                                                                     <  SRR4302540.9612118/94‑1 (MQ=60)
                          GGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTG                                                                     >  SRR4302540.1940955/1‑94 (MQ=60)
                           GGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGC                                                                    <  SRR4302540.3106645/94‑1 (MQ=60)
                           GGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGC                                                                    <  SRR4302540.8600102/94‑1 (MQ=60)
                           GGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGC                                                                    <  SRR4302540.7539591/94‑1 (MQ=60)
                           GGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGC                                                                    >  SRR4302540.1113999/1‑94 (MQ=60)
                            GGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCG                                                                   <  SRR4302540.5174452/94‑1 (MQ=60)
                            GGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCG                                                                   <  SRR4302540.7899847/94‑1 (MQ=60)
                             GTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGC                                                                  >  SRR4302540.335237/1‑94 (MQ=60)
                             GTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGC                                                                  <  SRR4302540.9624446/94‑1 (MQ=60)
                              TTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCT                                                                 <  SRR4302540.7909188/94‑1 (MQ=60)
                              TTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCT                                                                 >  SRR4302540.2391702/1‑94 (MQ=60)
                              TTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCT                                                                 <  SRR4302540.8012170/94‑1 (MQ=60)
                              TTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCT                                                                 <  SRR4302540.9138111/94‑1 (MQ=60)
                              TTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCT                                                                 <  SRR4302540.3697578/94‑1 (MQ=60)
                               TTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTG                                                                >  SRR4302540.7690263/1‑94 (MQ=60)
                               TTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTG                                                                >  SRR4302540.3425636/1‑94 (MQ=60)
                                TTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGA                                                               >  SRR4302540.653972/1‑94 (MQ=60)
                                 TTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGAT                                                              >  SRR4302540.8753332/1‑94 (MQ=60)
                                 TTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGAT                                                              >  SRR4302540.1454215/1‑94 (MQ=60)
                                 TTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGAT                                                              <  SRR4302540.3184532/94‑1 (MQ=60)
                                  TATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATG                                                             <  SRR4302540.5706777/94‑1 (MQ=60)
                                   ATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGG                                                            >  SRR4302540.6473114/1‑94 (MQ=60)
                                   ATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGG                                                            <  SRR4302540.7090856/94‑1 (MQ=60)
                                   ATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGG                                                            >  SRR4302540.4604207/1‑94 (MQ=60)
                                   ATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGG                                                            >  SRR4302540.4604034/1‑94 (MQ=60)
                                    TTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGC                                                           <  SRR4302540.4572070/94‑1 (MQ=60)
                                     TAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCACACATCGTGTGCGCggatgcaa                                                          >  SRR4302540.5749068/1‑86 (MQ=60)
                                     TAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCA                                                          >  SRR4302540.9729116/1‑94 (MQ=60)
                                     TAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCA                                                          <  SRR4302540.9467294/94‑1 (MQ=60)
                                     TAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCA                                                          >  SRR4302540.487031/1‑94 (MQ=60)
                                       T‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGA                                                        >  SRR4302540.2334102/1‑94 (MQ=60)
                                       T‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGA                                                        <  SRR4302540.3531876/94‑1 (MQ=60)
                                       T‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGA                                                        >  SRR4302540.5308679/1‑94 (MQ=60)
                                       T‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGA                                                        <  SRR4302540.9735457/94‑1 (MQ=60)
                                          AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAG                                                       <  SRR4302540.8761406/94‑1 (MQ=60)
                                          AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAG                                                       <  SRR4302540.7962744/94‑1 (MQ=60)
                                           GAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAGCATCGTGTGCGCTGATGGCAGAGT                                                      >  SRR4302540.3515017/1‑94 (MQ=60)
                                           GAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGT                                                      <  SRR4302540.2826622/94‑1 (MQ=60)
                                             AATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAG                                                    <  SRR4302540.7459509/94‑1 (MQ=60)
                                             AATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAG                                                    <  SRR4302540.3086358/94‑1 (MQ=60)
                                             AATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAG                                                    <  SRR4302540.5716627/94‑1 (MQ=60)
                                              ATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGG                                                   >  SRR4302540.522060/1‑94 (MQ=60)
                                              ATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGG                                                   >  SRR4302540.7971704/1‑94 (MQ=60)
                                              ATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGG                                                   >  SRR4302540.8400182/1‑94 (MQ=60)
                                               TAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGT                                                  >  SRR4302540.1483612/1‑94 (MQ=60)
                                                AGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTG                                                 <  SRR4302540.7364351/94‑1 (MQ=60)
                                                AGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTG                                                 >  SRR4302540.9269236/1‑94 (MQ=60)
                                                AGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTG                                                 >  SRR4302540.5506535/1‑94 (MQ=60)
                                                 GGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGG                                                <  SRR4302540.5915878/94‑1 (MQ=60)
                                                 GGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGG                                                <  SRR4302540.1650030/94‑1 (MQ=60)
                                                 GGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGG                                                <  SRR4302540.415712/94‑1 (MQ=60)
                                                 GGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGG                                                >  SRR4302540.6372925/1‑94 (MQ=60)
                                                  GCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGG                                               >  SRR4302540.7193237/1‑94 (MQ=60)
                                                   CAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAG                                              <  SRR4302540.1870052/94‑1 (MQ=60)
                                                   CAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAG                                              <  SRR4302540.1017389/94‑1 (MQ=60)
                                                   CAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAG                                              >  SRR4302540.2007165/1‑94 (MQ=60)
                                                   CAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAG                                              <  SRR4302540.5639140/94‑1 (MQ=60)
                                                   CAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAG                                              <  SRR4302540.1514573/94‑1 (MQ=60)
                                                   CAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAG                                              <  SRR4302540.1661429/94‑1 (MQ=60)
                                                   CAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGGGGAG                                              >  SRR4302540.5723892/1‑94 (MQ=60)
                                                    AAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGG                                             >  SRR4302540.4781540/1‑94 (MQ=60)
                                                     AAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGA                                            <  SRR4302540.7844562/94‑1 (MQ=60)
                                                     AAAATGATGGGAGAATTATGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGA                                            <  SRR4302540.7844565/94‑1 (MQ=60)
                                                      AAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGAC                                           >  SRR4302540.6138661/1‑94 (MQ=60)
                                                      AAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGAC                                           >  SRR4302540.3740360/1‑94 (MQ=60)
                                                      AAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGAC                                           <  SRR4302540.7651423/94‑1 (MQ=60)
                                                      AAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGAC                                           <  SRR4302540.4159553/94‑1 (MQ=60)
                                                       AATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACT                                          >  SRR4302540.1924747/1‑94 (MQ=60)
                                                         TGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCC                                        <  SRR4302540.10152886/94‑1 (MQ=60)
                                                          GATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCA                                       <  SRR4302540.3362164/94‑1 (MQ=60)
                                                          GATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCA                                       >  SRR4302540.3849863/1‑94 (MQ=60)
                                                           ATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAG                                      >  SRR4302540.8557172/1‑94 (MQ=60)
                                                           ATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAG                                      >  SRR4302540.2640456/1‑94 (MQ=60)
                                                           ATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAG                                      >  SRR4302540.5510531/1‑94 (MQ=60)
                                                           ATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAG                                      <  SRR4302540.8916862/94‑1 (MQ=60)
                                                            TGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGA                                     >  SRR4302540.7317146/1‑94 (MQ=60)
                                                            TGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGA                                     >  SRR4302540.8346373/1‑94 (MQ=60)
                                                             GGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGAC                                    <  SRR4302540.5091758/94‑1 (MQ=60)
                                                             GGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGAC                                    <  SRR4302540.2424584/94‑1 (MQ=60)
                                                             GGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGAC                                    >  SRR4302540.2263362/1‑94 (MQ=60)
                                                              GGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACA                                   <  SRR4302540.5810322/94‑1 (MQ=60)
                                                              GGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACA                                   <  SRR4302540.7028101/94‑1 (MQ=60)
                                                               GAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAG                                  <  SRR4302540.3930819/94‑1 (MQ=60)
                                                               GAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAG                                  >  SRR4302540.1768304/1‑94 (MQ=60)
                                                                AGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGT                                 <  SRR4302540.6675897/94‑1 (MQ=60)
                                                                AGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGT                                 >  SRR4302540.6595364/1‑94 (MQ=60)
                                                                  AATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCA                               <  SRR4302540.5609705/94‑1 (MQ=60)
                                                                  AATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCA                               <  SRR4302540.676242/94‑1 (MQ=60)
                                                                   ATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAA                              >  SRR4302540.1000911/1‑94 (MQ=60)
                                                                   ATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAA                              >  SRR4302540.6976188/1‑94 (MQ=60)
                                                                   ATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAA                              <  SRR4302540.5669501/94‑1 (MQ=60)
                                                                   ATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAA                              <  SRR4302540.510410/94‑1 (MQ=60)
                                                                   ATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAA                              <  SRR4302540.1960425/94‑1 (MQ=60)
                                                                     TCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAAC                            >  SRR4302540.5857201/1‑94 (MQ=60)
                                                                     TCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAAC                            <  SRR4302540.4275141/94‑1 (MQ=60)
                                                                      CTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACG                           <  SRR4302540.4670445/94‑1 (MQ=60)
                                                                      CTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGAAGGTGGAGGACTCCAGACAGTCAAACG                           >  SRR4302540.8943091/1‑94 (MQ=60)
                                                                       TGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGA                          <  SRR4302540.8631358/94‑1 (MQ=60)
                                                                        GAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGAT                         <  SRR4302540.8126375/94‑1 (MQ=60)
                                                                        GAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGAT                         <  SRR4302540.969566/94‑1 (MQ=60)
                                                                          ATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAG                       >  SRR4302540.9973797/1‑94 (MQ=60)
                                                                          ATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAG                       <  SRR4302540.2244869/94‑1 (MQ=60)
                                                                          ATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAG                       <  SRR4302540.5279912/94‑1 (MQ=60)
                                                                           TTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGA                      <  SRR4302540.1735582/94‑1 (MQ=60)
                                                                           TTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGA                      >  SRR4302540.3844080/1‑94 (MQ=60)
                                                                            TTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAA                     >  SRR4302540.4884747/1‑94 (MQ=60)
                                                                             TTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAA                    <  SRR4302540.4765803/94‑1 (MQ=60)
                                                                               GGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAA                  <  SRR4302540.7685747/94‑1 (MQ=60)
                                                                               GGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAA                  <  SRR4302540.6849250/94‑1 (MQ=60)
                                                                               GGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAA                  >  SRR4302540.4395473/1‑94 (MQ=60)
                                                                                 CCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGA                >  SRR4302540.3560452/1‑94 (MQ=60)
                                                                                  CACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGAT               <  SRR4302540.6695843/94‑1 (MQ=60)
                                                                                  CACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGAT               <  SRR4302540.2234304/94‑1 (MQ=60)
                                                                                   ACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATA              <  SRR4302540.3429425/94‑1 (MQ=60)
                                                                                   ACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATA              >  SRR4302540.9953852/1‑94 (MQ=60)
                                                                                   ACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATA              <  SRR4302540.2863647/94‑1 (MQ=60)
                                                                                    CGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAG             >  SRR4302540.3274053/1‑94 (MQ=60)
                                                                                    CGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAG             <  SRR4302540.3047965/94‑1 (MQ=60)
                                                                                     GGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGC            >  SRR4302540.4495545/1‑94 (MQ=60)
                                                                                     GGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGC            >  SRR4302540.5370629/1‑94 (MQ=60)
                                                                                     GGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGC            <  SRR4302540.1946477/94‑1 (MQ=60)
                                                                                     GGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGAAGGTGGAGGACTCCAGACAGTCACACGTTAGAAAAAGATAGC            >  SRR4302540.8386001/1‑94 (MQ=60)
                                                                                      GAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCC           <  SRR4302540.7117968/94‑1 (MQ=60)
                                                                                      GAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCC           >  SRR4302540.5802650/1‑94 (MQ=60)
                                                                                        AAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTT         >  SRR4302540.5034254/1‑94 (MQ=60)
                                                                                        AAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTT         >  SRR4302540.9907609/1‑94 (MQ=60)
                                                                                        AAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTT         >  SRR4302540.9907607/1‑94 (MQ=60)
                                                                                        AAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTT         <  SRR4302540.1872830/94‑1 (MQ=60)
                                                                                         AATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTT        >  SRR4302540.1261968/1‑94 (MQ=60)
                                                                                         AATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTT        >  SRR4302540.5537760/1‑94 (MQ=60)
                                                                                         AATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTT        >  SRR4302540.2878129/1‑94 (MQ=60)
                                                                                          ATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTA       >  SRR4302540.981622/1‑94 (MQ=60)
                                                                                          ATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTA       >  SRR4302540.7537103/1‑94 (MQ=60)
                                                                                           TAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTAT      <  SRR4302540.893729/94‑1 (MQ=60)
                                                                                           TAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTAT      <  SRR4302540.1459496/94‑1 (MQ=60)
                                                                                             AGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGG    <  SRR4302540.2845668/94‑1 (MQ=60)
                                                                                             AGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGG    <  SRR4302540.3356991/94‑1 (MQ=60)
                                                                                             AGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGG    >  SRR4302540.5009478/1‑94 (MQ=60)
                                                                                              GCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGA   <  SRR4302540.9489796/94‑1 (MQ=60)
                                                                                              GCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGA   <  SRR4302540.5698112/94‑1 (MQ=60)
                                                                                              GCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGA   >  SRR4302540.9867313/1‑94 (MQ=60)
                                                                                               CATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAG  >  SRR4302540.226409/1‑94 (MQ=60)
                                                                                               CATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAG  <  SRR4302540.3398420/94‑1 (MQ=60)
                                                                                               CATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAG  >  SRR4302540.7952755/1‑94 (MQ=60)
                                                                                               CATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAG  >  SRR4302540.3703755/1‑94 (MQ=60)
                                                                                               |                                                                                             
CCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTAT‑‑AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAG  >  NC_000913/3621322‑3621508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑