Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,621,415 T→C intergenic (+2/‑594) yhhH → / → yhhI hypothetical protein/putative receptor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,621,4150TC100.0% 677.5 / NA 205intergenic (+2/‑594)yhhH/yhhIhypothetical protein/putative receptor
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (88/117);  total (88/117)

Only 100 of 205 total aligned reads displayed.

TTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTAT  >  NC_000913/3621325‑3621504
                                                                                          |                                                                                         
atCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCAt                                                                                         <  1:162222/92‑1 (MQ=255)
   aCTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTa                                                                                      <  2:4880017/93‑1 (MQ=255)
   aCTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTa                                                                                      <  1:5562716/93‑1 (MQ=255)
   aCTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTa                                                                                      >  1:2478863/1‑93 (MQ=255)
    cTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTaa                                                                                     <  1:3719302/93‑1 (MQ=255)
    cTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTaa                                                                                     <  1:2261870/93‑1 (MQ=255)
      cAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAgg                                                                                   <  2:2383294/93‑1 (MQ=255)
       aGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGa                                                                                  <  2:679456/93‑1 (MQ=255)
       aGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGa                                                                                  <  2:2257000/93‑1 (MQ=255)
       aGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGa                                                                                  <  1:2417030/93‑1 (MQ=255)
        gACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGAt                                                                                 <  2:5703911/93‑1 (MQ=255)
            aaaTTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATc                                                                             <  1:728267/93‑1 (MQ=255)
             aaTTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCa                                                                            >  1:4408827/1‑93 (MQ=255)
              aTTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCaa                                                                           >  1:1693797/1‑93 (MQ=255)
              aTTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCaa                                                                           >  1:3163291/1‑93 (MQ=255)
                tGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAAc                                                                         <  1:2184842/93‑1 (MQ=255)
                tGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAAc                                                                         <  2:1584249/93‑1 (MQ=255)
                tGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAAc                                                                         <  2:2525907/93‑1 (MQ=255)
                  cTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACAt                                                                       >  2:1631278/1‑93 (MQ=255)
                  cTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACAt                                                                       >  1:3632811/1‑93 (MQ=255)
                      tggGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCgtg                                                                   >  1:6195556/1‑93 (MQ=255)
                        gggTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGtgtg                                                                 >  1:3888288/1‑93 (MQ=255)
                        gggTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGtgtg                                                                 >  2:4319717/1‑93 (MQ=255)
                         ggTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTgc                                                                <  1:2369616/93‑1 (MQ=255)
                         ggTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTgc                                                                >  2:5230273/1‑93 (MQ=255)
                           tttttATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTgcgc                                                              >  2:578907/1‑93 (MQ=255)
                            ttttATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTTAGGATAATCAAACATCGTGTGCGCt                                                             >  2:5386342/1‑93 (MQ=255)
                             tttATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTg                                                            <  2:5151722/93‑1 (MQ=255)
                              ttattaTAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGa                                                           <  1:2408614/93‑1 (MQ=255)
                              ttattaTAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGa                                                           <  1:916491/93‑1 (MQ=255)
                              ttattaTAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGa                                                           <  2:6294406/93‑1 (MQ=255)
                               tattatAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGAt                                                          >  2:3745993/1‑93 (MQ=255)
                                attatAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATg                                                         <  2:3479505/93‑1 (MQ=255)
                                attatAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATg                                                         >  2:1002598/1‑93 (MQ=255)
                                 ttatAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATgg                                                        >  1:3329357/1‑93 (MQ=255)
                                   ataGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCa                                                      <  2:3054866/93‑1 (MQ=255)
                                      gAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCagag                                                   >  1:914065/1‑93 (MQ=255)
                                       aaaTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGt                                                  <  2:2765208/93‑1 (MQ=255)
                                        aaTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTa                                                 >  1:1740650/1‑93 (MQ=255)
                                        aaTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTa                                                 >  1:518577/1‑93 (MQ=255)
                                        aaTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTa                                                 <  1:1554043/93‑1 (MQ=255)
                                         aTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAg                                                <  1:5126541/93‑1 (MQ=255)
                                          tAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAgg                                               <  2:3877702/93‑1 (MQ=255)
                                           aGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGt                                              <  2:5835132/93‑1 (MQ=255)
                                           aGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGt                                              <  2:1156054/93‑1 (MQ=255)
                                            ggCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTg                                             <  1:3065476/93‑1 (MQ=255)
                                            ggCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTg                                             >  2:5333097/1‑93 (MQ=255)
                                             gCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTgg                                            <  1:4640276/93‑1 (MQ=255)
                                              cAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGCGTAGGTgga                                           >  2:2282383/1‑93 (MQ=255)
                                               aaaaaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTggag                                          <  2:3648344/93‑1 (MQ=255)
                                               aaaaaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTggag                                          <  2:4144401/93‑1 (MQ=255)
                                               aaaaaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTggag                                          >  1:1464490/1‑93 (MQ=255)
                                                  aaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGAc                                       <  1:4554496/93‑1 (MQ=255)
                                                   atgatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACt                                      >  1:6102218/1‑93 (MQ=255)
                                                   atgatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACt                                      <  1:5451520/93‑1 (MQ=255)
                                                     tatgGGAGAAGTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTcc                                    <  1:416781/92‑1 (MQ=255)
                                                     gatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTcc                                    >  1:569026/1‑93 (MQ=255)
                                                      atgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCa                                   <  1:3829818/93‑1 (MQ=255)
                                                        gggAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAATCATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGCCTCCAGa                                 <  1:801374/93‑1 (MQ=255)
                                                         ggAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGAc                                >  1:5231456/1‑93 (MQ=255)
                                                         ggAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGAc                                <  1:1833018/93‑1 (MQ=255)
                                                            gaATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGt                             >  2:5536761/1‑93 (MQ=255)
                                                             aaTTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTc                            >  2:2945063/1‑93 (MQ=255)
                                                              aTTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCGGAGTAGGTGGAGGACTCCAGACAGTCa                           >  2:147686/1‑93 (MQ=255)
                                                              aTTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCa                           <  2:5729375/93‑1 (MQ=255)
                                                              aTTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCa                           >  1:6268236/1‑93 (MQ=255)
                                                               ttCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCaa                          >  1:4010649/1‑93 (MQ=255)
                                                                tCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCaaa                         <  1:4848820/93‑1 (MQ=255)
                                                                tCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCaaa                         <  2:4491266/93‑1 (MQ=255)
                                                                tCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCaaa                         >  1:1259409/1‑93 (MQ=255)
                                                                tCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCaaa                         <  2:5623807/93‑1 (MQ=255)
                                                                 cTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCATAc                        <  2:4751044/93‑1 (MQ=255)
                                                                  tGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACg                       <  2:2504224/93‑1 (MQ=255)
                                                                   gAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGa                      >  2:296738/1‑93 (MQ=255)
                                                                    aaTTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGAt                     <  1:1173257/93‑1 (MQ=255)
                                                                    aaTTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGAt                     <  1:4374206/93‑1 (MQ=255)
                                                                    aaTTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGAt                     >  2:5060663/1‑93 (MQ=255)
                                                                    aaTTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGAt                     <  2:1368391/93‑1 (MQ=255)
                                                                        ttGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGaa                 >  2:2592541/1‑93 (MQ=255)
                                                                         tGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGaaa                >  1:4497161/1‑93 (MQ=255)
                                                                          ggCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGaaaa               <  1:3483460/93‑1 (MQ=255)
                                                                           gCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGaaaaa              >  1:5007168/1‑93 (MQ=255)
                                                                            ccACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAg             <  1:1072142/93‑1 (MQ=255)
                                                                            ccACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAg             >  1:963460/1‑93 (MQ=255)
                                                                               ctgAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATa          <  1:5768440/91‑1 (MQ=255)
                                                                               cGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATa          >  1:2134271/1‑93 (MQ=255)
                                                                               cGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATa          <  2:6098519/93‑1 (MQ=255)
                                                                               cGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATa          <  2:172733/93‑1 (MQ=255)
                                                                                ggAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAg         <  1:2821554/93‑1 (MQ=255)
                                                                                ggAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAg         >  2:3265720/1‑93 (MQ=255)
                                                                                 gAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGc        >  2:3212282/1‑93 (MQ=255)
                                                                                  aaaaTAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGcc       <  2:1560756/93‑1 (MQ=255)
                                                                                   aaaTAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCt      >  1:5626885/1‑93 (MQ=255)
                                                                                   aaaTAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCt      >  1:2698079/1‑93 (MQ=255)
                                                                                   aaaTAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCt      <  2:1826520/93‑1 (MQ=255)
                                                                                     aTAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCttt    >  1:2716849/1‑93 (MQ=255)
                                                                                     aTAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCttt    <  1:3962840/93‑1 (MQ=255)
                                                                                      tAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTa   <  2:6058329/93‑1 (MQ=255)
                                                                                       aaGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTAt  <  1:1320346/93‑1 (MQ=255)
                                                                                       aaGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTAt  <  1:6308235/93‑1 (MQ=255)
                                                                                          |                                                                                         
TTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTAT  >  NC_000913/3621325‑3621504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAG  >  NC_000913/3621322‑3621508
                                                                                             |                                                                                             
CCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGC                                                                                               <  SRR4302533.5023786/94‑1 (MQ=60)
 CATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCA                                                                                              >  SRR4302533.819432/1‑94 (MQ=60)
  ATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCAT                                                                                             <  SRR4302533.3707479/94‑1 (MQ=60)
  ATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCAT                                                                                             >  SRR4302533.1904333/1‑94 (MQ=60)
  ATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCAT                                                                                             <  SRR4302533.2850847/94‑1 (MQ=60)
   ATCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATG                                                                                            <  SRR4302533.163256/94‑1 (MQ=60)
     CACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTA                                                                                          >  SRR4302533.2494151/1‑94 (MQ=60)
     CACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTA                                                                                          >  SRR4302533.1606173/1‑94 (MQ=60)
      ACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAA                                                                                         <  SRR4302533.5596339/94‑1 (MQ=60)
       CTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAG                                                                                        <  SRR4302533.2275858/94‑1 (MQ=60)
       CTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAG                                                                                        >  SRR4302533.920862/1‑94 (MQ=60)
       CTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAG                                                                                        <  SRR4302533.3742134/94‑1 (MQ=60)
         CAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGA                                                                                      >  SRR4302533.2794805/1‑94 (MQ=60)
          AGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGAT                                                                                     <  SRR4302533.2430907/94‑1 (MQ=60)
          AGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGAT                                                                                     <  SRR4302533.718090/94‑1 (MQ=60)
          AGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGAT                                                                                     <  SRR4302533.2431956/94‑1 (MQ=60)
           GACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATA                                                                                    >  SRR4302533.321347/1‑94 (MQ=60)
            ACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAA                                                                                   <  SRR4302533.4892526/94‑1 (MQ=60)
            ACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAA                                                                                   <  SRR4302533.5666973/94‑1 (MQ=60)
             CCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGTGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAAT                                                                                  >  SRR4302533.3816605/1‑94 (MQ=60)
             CCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAAT                                                                                  >  SRR4302533.1710254/1‑94 (MQ=60)
               AAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCA                                                                                >  SRR4302533.4435452/1‑94 (MQ=60)
               AAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCA                                                                                <  SRR4302533.732570/94‑1 (MQ=60)
                AATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAA                                                                               >  SRR4302533.1704058/1‑94 (MQ=60)
                AATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAA                                                                               >  SRR4302533.3182761/1‑94 (MQ=60)
                AATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAA                                                                               >  SRR4302533.5242540/1‑94 (MQ=60)
                 ATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAA                                                                              >  SRR4302533.1697762/1‑94 (MQ=60)
                   TGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACA                                                                            <  SRR4302533.2198311/94‑1 (MQ=60)
                    GCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACAT                                                                           >  SRR4302533.3655160/1‑94 (MQ=60)
                    GCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACAT                                                                           <  SRR4302533.5645514/94‑1 (MQ=60)
                      TGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCG                                                                         >  SRR4302533.4072539/1‑94 (MQ=60)
                      TGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCG                                                                         <  SRR4302533.5042896/94‑1 (MQ=60)
                      TGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCG                                                                         <  SRR4302533.3116916/94‑1 (MQ=60)
                       GGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGT                                                                        >  SRR4302533.5217477/1‑94 (MQ=60)
                        GTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTG                                                                       >  SRR4302533.6232727/1‑94 (MQ=60)
                         TGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGT                                                                      <  SRR4302533.4425009/94‑1 (MQ=60)
                         TGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGT                                                                      <  SRR4302533.1281143/94‑1 (MQ=60)
                          GGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTG                                                                     >  SRR4302533.6183832/1‑94 (MQ=60)
                          GGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTG                                                                     >  SRR4302533.3912012/1‑94 (MQ=60)
                           GGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGC                                                                    <  SRR4302533.4445580/94‑1 (MQ=60)
                            GGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCG                                                                   <  SRR4302533.2384275/94‑1 (MQ=60)
                            GGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCG                                                                   <  SRR4302533.217584/94‑1 (MQ=60)
                             GTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGC                                                                  >  SRR4302533.3513144/1‑94 (MQ=60)
                              TTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCT                                                                 >  SRR4302533.4589869/1‑94 (MQ=60)
                                 TTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCACACATCGTGTGCGCTGAT                                                              >  SRR4302533.4302722/1‑94 (MQ=60)
                                 TTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGAT                                                              <  SRR4302533.1253385/94‑1 (MQ=60)
                                 TTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGAT                                                              >  SRR4302533.2732928/1‑94 (MQ=60)
                                 TTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGAT                                                              <  SRR4302533.921876/94‑1 (MQ=60)
                                 TTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGAT                                                              <  SRR4302533.2423494/94‑1 (MQ=60)
                                   ATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGG                                                            <  SRR4302533.786887/94‑1 (MQ=60)
                                   ATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGG                                                            >  SRR4302533.3349935/1‑94 (MQ=60)
                                     TATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCA                                                          <  SRR4302533.5751143/94‑1 (MQ=60)
                                        AGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAG                                                       >  SRR4302533.919440/1‑94 (MQ=60)
                                         GAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGT                                                      >  SRR4302533.2492380/1‑94 (MQ=60)
                                          AAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTA                                                     >  SRR4302533.521659/1‑94 (MQ=60)
                                          AAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTA                                                     <  SRR4302533.4873432/94‑1 (MQ=60)
                                          AAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTA                                                     >  SRR4302533.1751205/1‑94 (MQ=60)
                                           AATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAG                                                    <  SRR4302533.1563399/94‑1 (MQ=60)
                                           AATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAG                                                    <  SRR4302533.24018/94‑1 (MQ=60)
                                           AATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAG                                                    <  SRR4302533.3703657/94‑1 (MQ=60)
                                            ATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGG                                                   <  SRR4302533.5157511/94‑1 (MQ=60)
                                             TAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGT                                                  >  SRR4302533.3019096/1‑94 (MQ=60)
                                               GGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGG                                                <  SRR4302533.3084305/94‑1 (MQ=60)
                                                GCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGA                                               <  SRR4302533.6290872/94‑1 (MQ=60)
                                                GCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGA                                               <  SRR4302533.4668392/94‑1 (MQ=60)
                                                 CAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAG                                              >  SRR4302533.1473317/1‑94 (MQ=60)
                                                     AATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACT                                          >  SRR4302533.6139058/1‑94 (MQ=60)
                                                     AATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACT                                          <  SRR4302533.4582117/94‑1 (MQ=60)
                                                      ATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTC                                         >  SRR4302533.1000874/1‑94 (MQ=60)
                                                      ATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTC                                         <  SRR4302533.5413901/94‑1 (MQ=60)
                                                      ATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTC                                         <  SRR4302533.5484361/94‑1 (MQ=60)
                                                       TGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCC                                        >  SRR4302533.5578772/1‑94 (MQ=60)
                                                       TGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCC                                        >  SRR4302533.572391/1‑94 (MQ=60)
                                                        TATGGGAGAAGTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCA                                       <  SRR4302533.419283/94‑1 (MQ=60)
                                                         ATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAG                                      <  SRR4302533.3853231/94‑1 (MQ=60)
                                                           GGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAATCATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGCCTCCAGAC                                    <  SRR4302533.806086/94‑1 (MQ=60)
                                                           GGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGAC                                    >  SRR4302533.5262922/1‑94 (MQ=60)
                                                            GGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACA                                   <  SRR4302533.1844205/94‑1 (MQ=60)
                                                               GAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTC                                <  SRR4302533.3856923/94‑1 (MQ=60)
                                                               GAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTC                                >  SRR4302533.1550348/1‑94 (MQ=60)
                                                                AATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCA                               >  SRR4302533.6305692/1‑94 (MQ=60)
                                                                 ATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAA                              >  SRR4302533.4035064/1‑94 (MQ=60)
                                                                  TTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAA                             >  SRR4302533.1266940/1‑94 (MQ=60)
                                                                   TCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAAC                            <  SRR4302533.4878203/94‑1 (MQ=60)
                                                                   TCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAAC                            >  SRR4302533.1458819/1‑94 (MQ=60)
                                                                    CTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAACCATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACG                           <  SRR4302533.4534201/94‑1 (MQ=60)
                                                                      GAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGAT                         >  SRR4302533.5913063/1‑94 (MQ=60)
                                                                       AATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATA                        <  SRR4302533.1180300/94‑1 (MQ=60)
                                                                       AATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATA                        <  SRR4302533.4400609/94‑1 (MQ=60)
                                                                          TTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAA                     <  SRR4302533.6338590/94‑1 (MQ=60)
                                                                           TTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAA                    >  SRR4302533.4524394/1‑94 (MQ=60)
                                                                            TGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAA                   <  SRR4302533.5173798/94‑1 (MQ=60)
                                                                             GGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAA                  >  SRR4302533.5037509/1‑94 (MQ=60)
                                                                             GGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAA                  <  SRR4302533.3504947/94‑1 (MQ=60)
                                                                             GGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAA                  <  SRR4302533.3039103/94‑1 (MQ=60)
                                                                              GCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAG                 >  SRR4302533.969119/1‑94 (MQ=60)
                                                                              GCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAG                 <  SRR4302533.4010327/94‑1 (MQ=60)
                                                                               CCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGA                <  SRR4302533.1078460/94‑1 (MQ=60)
                                                                                CACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGAT               >  SRR4302533.1142380/1‑94 (MQ=60)
                                                                                CACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGAT               <  SRR4302533.1752785/94‑1 (MQ=60)
                                                                                 ACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATA              >  SRR4302533.2147432/1‑94 (MQ=60)
                                                                                  CTGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAG             <  SRR4302533.5803262/94‑1 (MQ=60)
                                                                                  CGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAG             >  SRR4302533.3429037/1‑94 (MQ=60)
                                                                                  CGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAG             <  SRR4302533.2371979/94‑1 (MQ=60)
                                                                                  AGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAG             <  SRR4302533.2199068/94‑1 (MQ=60)
                                                                                   GGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGC            <  SRR4302533.2838919/94‑1 (MQ=60)
                                                                                    GAAAATAAGCATGTAAGGATAATCAACCATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCC           <  SRR4302533.953712/94‑1 (MQ=60)
                                                                                     AAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCT          >  SRR4302533.2714612/1‑94 (MQ=60)
                                                                                     AAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCT          >  SRR4302533.5660906/1‑94 (MQ=60)
                                                                                      AAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGACAGCCTT         <  SRR4302533.2533186/94‑1 (MQ=60)
                                                                                       AATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTT        >  SRR4302533.2733528/1‑94 (MQ=60)
                                                                                       AATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTT        >  SRR4302533.3977824/1‑94 (MQ=60)
                                                                                        ATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTA       <  SRR4302533.3986982/94‑1 (MQ=60)
                                                                                         TAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTAT      <  SRR4302533.854498/94‑1 (MQ=60)
                                                                                          AAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATG     <  SRR4302533.6346094/94‑1 (MQ=60)
                                                                                          AAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATG     <  SRR4302533.1328273/94‑1 (MQ=60)
                                                                                           AGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGCCTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGG    <  SRR4302533.6051000/94‑1 (MQ=60)
                                                                                           AGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGG    >  SRR4302533.1566290/1‑94 (MQ=60)
                                                                                            GCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGA   <  SRR4302533.1967216/94‑1 (MQ=60)
                                                                                            GCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGA   <  SRR4302533.5921166/94‑1 (MQ=60)
                                                                                            GCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGA   <  SRR4302533.5208235/94‑1 (MQ=60)
                                                                                             CATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAG  >  SRR4302533.3725616/1‑94 (MQ=60)
                                                                                             |                                                                                             
CCATTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAG  >  NC_000913/3621322‑3621508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑