Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,698,466 A→G N92S (AAC→AGC)  yhjV → putative transporter protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,698,4660AG99.8% 1741.1 / ‑6.2 536N92S (AAC→AGC) yhjVputative transporter protein
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (289/246);  total (290/246)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 563 total aligned reads displayed.

GGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAACTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCT  >  NC_000913/3698376‑3698555
                                                                                          |                                                                                         
gggTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCt                                                                                         >  2:1569163/1‑93 (MQ=255)
  gcaGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTgg                                                                                       >  2:1910249/3‑93 (MQ=255)
  gTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTgg                                                                                       >  2:8632392/1‑93 (MQ=255)
  gTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTgg                                                                                       <  1:2509596/93‑1 (MQ=255)
   gaGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTggg                                                                                      <  2:4161186/92‑1 (MQ=255)
     gTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGa                                                                                    >  2:1694055/1‑93 (MQ=255)
      tGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGaa                                                                                   <  2:8214188/93‑1 (MQ=255)
       gCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAt                                                                                  >  1:9461897/1‑93 (MQ=255)
        cAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACTCCGATATTAACAGTCATTGCCTGGGGAAGAGCTGGGGAAtt                                                                                 <  2:9382214/93‑1 (MQ=255)
         aGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAttt                                                                                >  1:7992134/1‑93 (MQ=255)
         aGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAttt                                                                                <  1:5660668/93‑1 (MQ=255)
         aGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAttt                                                                                <  1:7466170/93‑1 (MQ=255)
         aGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAttt                                                                                >  1:8892068/1‑93 (MQ=255)
          ggACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAtttt                                                                               <  2:2526538/93‑1 (MQ=255)
          ggACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATCATCAGTCATTACCTGGGGAAGAGCTGGGGAAtttt                                                                               >  2:3318127/1‑93 (MQ=255)
           gACATTTATTTAAAAACCCTTGCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTc                                                                              >  2:6446560/1‑93 (MQ=255)
            aCATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTcc                                                                             <  1:2035317/93‑1 (MQ=255)
            aCATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTcc                                                                             >  2:7911757/1‑93 (MQ=255)
            aCATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTcc                                                                             >  1:7030031/1‑93 (MQ=255)
             cagttatttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCt                                                                            <  2:6241937/90‑1 (MQ=255)
             cATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGCATTTTCCt                                                                            >  1:3661889/1‑93 (MQ=255)
             cATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCt                                                                            >  2:6773529/1‑93 (MQ=255)
             cATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCt                                                                            >  1:7140960/1‑93 (MQ=255)
              atttatttAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCtg                                                                           >  2:6114985/1‑92 (MQ=255)
              atttatttAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTc                                                                           <  1:1221940/93‑1 (MQ=255)
               tttatttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGTGAAGAGCTGGGGAATTTTCCTCg                                                                          >  2:5585100/1‑93 (MQ=255)
                 tatttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCggg                                                                        >  1:1729353/1‑93 (MQ=255)
                  atttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCgggg                                                                       <  2:6333215/93‑1 (MQ=255)
                      aaaatCTCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTAt                                                                   <  1:8362601/93‑1 (MQ=255)
                        aaaCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCt                                                                 <  2:5255027/93‑1 (MQ=255)
                        aaaCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCt                                                                 <  2:4614935/93‑1 (MQ=255)
                        aaaCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCt                                                                 <  1:2382252/93‑1 (MQ=255)
                           cccTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACt                                                              >  2:5657239/1‑93 (MQ=255)
                           cccTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACt                                                              >  2:2940082/1‑93 (MQ=255)
                            ccTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACtt                                                             <  1:3827883/93‑1 (MQ=255)
                            ccTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACtt                                                             <  2:6648308/93‑1 (MQ=255)
                             cTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACttt                                                            <  2:7321933/93‑1 (MQ=255)
                              tttCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACtttt                                                           >  1:6599181/1‑93 (MQ=255)
                                 cTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtgt                                                        >  1:4352329/1‑92 (MQ=255)
                                 cTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTGCCTCGGGGTTATCTACTTTTtga                                                        >  2:5518162/1‑93 (MQ=255)
                                  tGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtgat                                                       >  2:1044354/1‑93 (MQ=255)
                                    acaGCTATTCCTGTAATGACTACACCGATCTTATCAGTCATTACCGGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtgatga                                                     <  1:9195620/91‑1 (MQ=255)
                                    aaaGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtgatga                                                     >  1:2773386/1‑93 (MQ=255)
                                      aGCGATTCCTTGAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAtt                                                   <  1:7258834/93‑1 (MQ=255)
                                      aGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAtt                                                   <  2:9026620/93‑1 (MQ=255)
                                      aGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAtt                                                   <  2:1173007/93‑1 (MQ=255)
                                      aGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAtt                                                   <  1:9849615/93‑1 (MQ=255)
                                       gCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGCTTa                                                  <  2:9835971/93‑1 (MQ=255)
                                         gATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATc                                                <  2:7158192/93‑1 (MQ=255)
                                          aTTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTC‑GGGTTATCTACTTTTTGATGATTATCCa                                              >  2:4709307/1‑93 (MQ=255)
                                           ttCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCa                                              >  2:2297269/1‑93 (MQ=255)
                                            tCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCAc                                             >  2:7534061/1‑93 (MQ=255)
                                             ccTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACg                                            <  1:4446927/93‑1 (MQ=255)
                                             ccTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACg                                            >  1:2890073/1‑93 (MQ=255)
                                                gTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGa                                         >  2:2742520/1‑93 (MQ=255)
                                                gTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGa                                         >  2:7584617/1‑93 (MQ=255)
                                                gTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGa                                         <  2:9588459/93‑1 (MQ=255)
                                                gTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGa                                         >  1:6353465/1‑93 (MQ=255)
                                                gTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGa                                         <  2:5083387/93‑1 (MQ=255)
                                                gTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGa                                         >  1:6953730/1‑93 (MQ=255)
                                                gTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGa                                         >  2:4370863/1‑93 (MQ=255)
                                                 tAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAt                                        <  2:8903741/93‑1 (MQ=255)
                                                  aaTGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAtt                                       >  1:7553008/1‑93 (MQ=255)
                                                    tGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAtttt                                     >  1:8554558/1‑93 (MQ=255)
                                                      aCTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTa                                   >  1:8761012/1‑93 (MQ=255)
                                                        tACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATc                                 >  2:7777246/1‑93 (MQ=255)
                                                         acacCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCt                                <  1:5122898/93‑1 (MQ=255)
                                                         acacCGATATTATCAGTCATTACCTGGGGAAAAGCTGGGGACTGTTCCTCGGGGGTATCTACTTTTTGATGATTATCCACGGGATTTTTATCt                                >  2:4502481/1‑93 (MQ=255)
                                                          cacCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTa                               <  1:1528544/93‑1 (MQ=255)
                                                           acCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTAc                              <  2:7000052/93‑1 (MQ=255)
                                                             cGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActc                            >  1:6444002/1‑93 (MQ=255)
                                                               atatTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctc                          >  2:9110784/1‑93 (MQ=255)
                                                                tattatCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctct                         >  2:7400726/1‑93 (MQ=255)
                                                                tattatCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctct                         >  1:4715831/1‑93 (MQ=255)
                                                                 attatCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctctc                        <  2:846351/93‑1 (MQ=255)
                                                                 attatCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATGTTTATCTActctctc                        >  2:8945276/1‑93 (MQ=255)
                                                                  ttatCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctctct                       >  1:4113156/1‑93 (MQ=255)
                                                                    atCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTcc                     >  2:3876958/1‑93 (MQ=255)
                                                                       aGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTg                  <  1:7781613/93‑1 (MQ=255)
                                                                         tCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGt                >  2:2451334/1‑93 (MQ=255)
                                                                          cATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGtt               <  1:9546539/93‑1 (MQ=255)
                                                                           aTTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGttt              <  1:10022216/93‑1 (MQ=255)
                                                                           aTTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGttt              <  2:3981808/93‑1 (MQ=255)
                                                                            ttACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGtttt             >  1:4603120/1‑93 (MQ=255)
                                                                            ttACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGtttt             <  1:5515111/93‑1 (MQ=255)
                                                                            ttACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGtttt             >  1:8222316/1‑93 (MQ=255)
                                                                            ttACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGtttt             <  1:9062801/93‑1 (MQ=255)
                                                                            ttACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGtttt             <  2:1387051/93‑1 (MQ=255)
                                                                             tACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTc            <  1:5957180/93‑1 (MQ=255)
                                                                             tACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTc            >  2:9799629/1‑93 (MQ=255)
                                                                             tACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTc            <  1:6789526/93‑1 (MQ=255)
                                                                             tACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTc            <  1:3327528/93‑1 (MQ=255)
                                                                             tACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTc            <  2:3178241/93‑1 (MQ=255)
                                                                                cTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGAc         <  1:4889941/93‑1 (MQ=255)
                                                                                  ggggAAGAGCTGGTGAATTTTCCTCGGGGTTATCTACGTTGTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAg       <  1:3299011/93‑1 (MQ=255)
                                                                                  ggggAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTACCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAg       <  2:2175412/93‑1 (MQ=255)
                                                                                   gggAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAgc      <  2:5939717/93‑1 (MQ=255)
                                                                                   ggaaagagCTGGGGAATGTTCCTCGGTGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTGCTCTCTCTCCGTGGTTTTCGACAgc      <  1:9399188/90‑1 (MQ=255)
                                                                                     gaagagCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAgcgc    <  1:2696380/93‑1 (MQ=255)
                                                                                     gaagagCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAgcgc    >  1:6206602/1‑93 (MQ=255)
                                                                                          |                                                                                         
GGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAACTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCT  >  NC_000913/3698376‑3698555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 278 total aligned reads displayed.
CCTGGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAACTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTCGT  >  NC_000913/3698373‑3698558
                                                                                             |                                                                                            
CCTGGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAG                                                                                              >  SRR4302540.3957181/1‑94 (MQ=60)
CCTGGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAG                                                                                              <  SRR4302540.2921135/94‑1 (MQ=60)
 CTGGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGC                                                                                             >  SRR4302540.7424968/1‑94 (MQ=60)
 CTGGGTAGTGCAGGACATTTATTTAAAAACCCTGTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGTAAGAGC                                                                                             <  SRR4302540.9800795/94‑1 (MQ=60)
  TGGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCT                                                                                            >  SRR4302540.4918660/1‑94 (MQ=60)
   GGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTG                                                                                           <  SRR4302540.5008138/94‑1 (MQ=60)
    GGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGG                                                                                          >  SRR4302540.3342080/1‑94 (MQ=60)
     GTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGG                                                                                         >  SRR4302540.5804470/1‑94 (MQ=60)
     GTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGG                                                                                         <  SRR4302540.2536699/94‑1 (MQ=60)
     GTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGG                                                                                         <  SRR4302540.6924716/94‑1 (MQ=60)
     GTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGG                                                                                         <  SRR4302540.9561275/94‑1 (MQ=60)
      TAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGG                                                                                        <  SRR4302540.3806158/94‑1 (MQ=60)
      TAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGCGAAGAGCTGGGG                                                                                        >  SRR4302540.2887344/1‑94 (MQ=60)
        GTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAA                                                                                      >  SRR4302540.5689152/1‑94 (MQ=60)
        GTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAA                                                                                      >  SRR4302540.7796432/1‑94 (MQ=60)
        GTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAA                                                                                      >  SRR4302540.6923368/1‑94 (MQ=60)
         TGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGCAGAGCTGGGGAAT                                                                                     >  SRR4302540.4741467/1‑94 (MQ=60)
         TGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAT                                                                                     >  SRR4302540.9574163/1‑94 (MQ=60)
         TGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAT                                                                                     >  SRR4302540.686887/1‑94 (MQ=60)
         TGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAT                                                                                     <  SRR4302540.9258318/94‑1 (MQ=60)
          GCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATT                                                                                    <  SRR4302540.7563025/94‑1 (MQ=60)
           CAGGACATTTATTTAAAAGCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTT                                                                                   <  SRR4302540.9263635/94‑1 (MQ=60)
           CAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTT                                                                                   <  SRR4302540.6222203/94‑1 (MQ=60)
           CAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTT                                                                                   <  SRR4302540.361321/94‑1 (MQ=60)
           CAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTT                                                                                   >  SRR4302540.8085175/1‑94 (MQ=60)
           CAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTT                                                                                   >  SRR4302540.8995001/1‑94 (MQ=60)
           CAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTT                                                                                   >  SRR4302540.4452313/1‑94 (MQ=60)
           CAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAAGGACTAAACGGATATATTAAGTCATTACCTGGGGAAGGGCGGGGGAATTT                                                                                   >  SRR4302540.2571275/1‑94 (MQ=57)
            AGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTT                                                                                  <  SRR4302540.7549450/94‑1 (MQ=60)
            AGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTT                                                                                  <  SRR4302540.7549451/94‑1 (MQ=60)
            AGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTT                                                                                  >  SRR4302540.9622096/1‑94 (MQ=60)
            AGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTT                                                                                  >  SRR4302540.3193576/1‑94 (MQ=60)
             GGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTC                                                                                 >  SRR4302540.8543490/1‑94 (MQ=60)
              GACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCC                                                                                <  SRR4302540.443339/94‑1 (MQ=60)
              GACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCC                                                                                >  SRR4302540.245355/1‑94 (MQ=60)
              GACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCC                                                                                >  SRR4302540.7108146/1‑94 (MQ=60)
              GACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCC                                                                                >  SRR4302540.1154280/1‑94 (MQ=60)
              GACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCC                                                                                >  SRR4302540.5833323/1‑94 (MQ=60)
              GACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGCGAAGAGCTGGGGAATTTTCC                                                                                <  SRR4302540.9546462/94‑1 (MQ=60)
               ACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCT                                                                               >  SRR4302540.7220512/1‑94 (MQ=60)
               ACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCT                                                                               >  SRR4302540.3702288/1‑94 (MQ=60)
               ACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCT                                                                               <  SRR4302540.2057266/94‑1 (MQ=60)
                CATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTC                                                                              <  SRR4302540.6490916/94‑1 (MQ=60)
                CATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTC                                                                              >  SRR4302540.9815368/1‑94 (MQ=60)
                 ATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCG                                                                             <  SRR4302540.9877806/94‑1 (MQ=60)
                 ATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCG                                                                             <  SRR4302540.1234443/94‑1 (MQ=60)
                  TTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGG                                                                            >  SRR4302540.2105444/1‑94 (MQ=60)
                   TTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGTG                                                                           >  SRR4302540.8888572/1‑94 (MQ=60)
                   TTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGG                                                                           >  SRR4302540.1748019/1‑94 (MQ=60)
                   TTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGG                                                                           <  SRR4302540.8603720/94‑1 (MQ=60)
                   TTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGG                                                                           >  SRR4302540.8793051/1‑94 (MQ=60)
                   TTATTTAAAAACCCTTTCTGAAAGCGATTCCTGCAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGCGACTTTTCCTCGGG                                                                           >  SRR4302540.1762251/1‑94 (MQ=60)
                    TATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGG                                                                          >  SRR4302540.6405187/1‑94 (MQ=60)
                     ATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGT                                                                         >  SRR4302540.4218911/1‑94 (MQ=60)
                      TTTAAAAACCCTTTCTGACAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGca                                                                        >  SRR4302540.7734599/1‑92 (MQ=60)
                      TTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTT                                                                        <  SRR4302540.5519166/94‑1 (MQ=60)
                      TTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTT                                                                        >  SRR4302540.5885816/1‑94 (MQ=60)
                       TTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTA                                                                       <  SRR4302540.8948984/94‑1 (MQ=60)
                        TAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTAT                                                                      >  SRR4302540.7039999/1‑94 (MQ=60)
                         AAAATCTCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATC                                                                     <  SRR4302540.8459647/94‑1 (MQ=60)
                         AAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATC                                                                     <  SRR4302540.4910128/94‑1 (MQ=60)
                          AAAACCCTTTCTGACAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGCAGAGCTGGGGAATTTGCCTCGGGGTTATCT                                                                    >  SRR4302540.9138066/1‑94 (MQ=60)
                          AAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGtatctca                                                                    >  SRR4302540.2970699/1‑87 (MQ=60)
                          AAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCT                                                                    <  SRR4302540.5284780/94‑1 (MQ=60)
                           AAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTgtctc                                                                   >  SRR4302540.8816599/1‑89 (MQ=60)
                           AAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTA                                                                   <  SRR4302540.2407919/94‑1 (MQ=60)
                           AAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTA                                                                   <  SRR4302540.8692253/94‑1 (MQ=60)
                           AAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTA                                                                   >  SRR4302540.8816600/1‑94 (MQ=60)
                             ACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACT                                                                 <  SRR4302540.347518/94‑1 (MQ=60)
                             ACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACT                                                                 >  SRR4302540.9330521/1‑94 (MQ=60)
                             ACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACT                                                                 >  SRR4302540.1884285/1‑94 (MQ=60)
                               CCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTT                                                               <  SRR4302540.3869537/94‑1 (MQ=60)
                                CTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTT                                                              >  SRR4302540.3354485/1‑94 (MQ=60)
                                CTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTT                                                              >  SRR4302540.2204953/1‑94 (MQ=60)
                                CTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTT                                                              >  SRR4302540.6456551/1‑94 (MQ=60)
                                CTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTT                                                              <  SRR4302540.1881762/94‑1 (MQ=60)
                                 TTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGGATTTTCCTCGGGGGTATCTACTTTTT                                                             >  SRR4302540.5058333/1‑94 (MQ=60)
                                 TTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTT                                                             <  SRR4302540.9173396/94‑1 (MQ=60)
                                  TTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTG                                                            >  SRR4302540.1351362/1‑94 (MQ=60)
                                   TCTGAAAGCGATTCCTGTAATGACTACACC‑ATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGAT                                                          >  SRR4302540.4399671/1‑94 (MQ=60)
                                    CTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGAT                                                          <  SRR4302540.2746877/94‑1 (MQ=60)
                                    CTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGAT                                                          >  SRR4302540.496708/1‑94 (MQ=60)
                                      GAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGT                                                        >  SRR4302540.7231374/1‑94 (MQ=60)
                                      GAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGA                                                        >  SRR4302540.8883550/1‑94 (MQ=60)
                                       AAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAT                                                       <  SRR4302540.5769748/94‑1 (MQ=60)
                                       AAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAT                                                       <  SRR4302540.9305923/94‑1 (MQ=60)
                                       AAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAT                                                       >  SRR4302540.1001408/1‑94 (MQ=60)
                                       AAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAT                                                       <  SRR4302540.8499003/94‑1 (MQ=60)
                                       AAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAT                                                       >  SRR4302540.3806409/1‑94 (MQ=60)
                                       AAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGCGAATTTTCCTCGGGGTTATCTACTTTTTGATGAT                                                       >  SRR4302540.6280945/1‑94 (MQ=60)
                                       AAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGCGAATTTTCCTCGGGGTTATCTACTTTTTGATGAT                                                       >  SRR4302540.6280941/1‑94 (MQ=60)
                                       AAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAACTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAT                                                       >  SRR4302540.7556721/1‑94 (MQ=60)
                                       AAAGCGATTCCTGTAATGACTACACCGATATTAACAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAT                                                       <  SRR4302540.9033532/94‑1 (MQ=60)
                                         AGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTA                                                     <  SRR4302540.7035408/94‑1 (MQ=60)
                                         AGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTA                                                     <  SRR4302540.4590760/94‑1 (MQ=60)
                                         AGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTA                                                     <  SRR4302540.7339825/94‑1 (MQ=60)
                                         AGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTA                                                     <  SRR4302540.9964744/94‑1 (MQ=60)
                                          GCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTAT                                                    >  SRR4302540.7175049/1‑94 (MQ=60)
                                          GCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTAT                                                    >  SRR4302540.4423451/1‑94 (MQ=60)
                                           CGATTCCTGTAATGACTACACCGATATTATCAGTCATTGCCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGTTGATTATC                                                   >  SRR4302540.2451514/1‑94 (MQ=60)
                                           CGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATC                                                   <  SRR4302540.10107759/94‑1 (MQ=60)
                                           CGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATC                                                   >  SRR4302540.4201739/1‑94 (MQ=60)
                                            GATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCC                                                  <  SRR4302540.9941220/94‑1 (MQ=60)
                                            GATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCC                                                  >  SRR4302540.4531434/1‑94 (MQ=60)
                                             ATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCA                                                 <  SRR4302540.1373248/94‑1 (MQ=60)
                                             ATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCA                                                 >  SRR4302540.1597852/1‑94 (MQ=60)
                                             ATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCA                                                 <  SRR4302540.7713588/94‑1 (MQ=60)
                                              TTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCAC                                                <  SRR4302540.4722136/94‑1 (MQ=60)
                                              TTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCAC                                                >  SRR4302540.706976/1‑94 (MQ=60)
                                               TCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACG                                               >  SRR4302540.2921562/1‑94 (MQ=60)
                                                CCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGG                                              >  SRR4302540.5701639/1‑94 (MQ=60)
                                                CCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGG                                              <  SRR4302540.4495125/94‑1 (MQ=60)
                                                CCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGG                                              >  SRR4302540.466051/1‑94 (MQ=60)
                                                 CTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGG                                             >  SRR4302540.7940546/1‑94 (MQ=60)
                                                  TGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGA                                            >  SRR4302540.6424222/1‑94 (MQ=60)
                                                   GTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAT                                           <  SRR4302540.4961984/94‑1 (MQ=60)
                                                   GTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAT                                           <  SRR4302540.6473244/94‑1 (MQ=60)
                                                    TAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATT                                          <  SRR4302540.787905/94‑1 (MQ=60)
                                                    TAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATT                                          <  SRR4302540.1124294/94‑1 (MQ=60)
                                                    TAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATT                                          >  SRR4302540.7637692/1‑94 (MQ=60)
                                                    TAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATT                                          >  SRR4302540.4571049/1‑94 (MQ=60)
                                                    TAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATT                                          >  SRR4302540.4339574/1‑94 (MQ=60)
                                                      ATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTT                                        >  SRR4302540.8653915/1‑94 (MQ=60)
                                                       TGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTT                                       <  SRR4302540.8440265/94‑1 (MQ=60)
                                                       TGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTT                                       >  SRR4302540.3070607/1‑94 (MQ=60)
                                                       TGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTT                                       <  SRR4302540.710999/94‑1 (MQ=60)
                                                        GACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTT                                      >  SRR4302540.3648964/1‑94 (MQ=60)
                                                         ACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTAT                                     <  SRR4302540.7257994/94‑1 (MQ=60)
                                                         ACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTAT                                     <  SRR4302540.6999822/94‑1 (MQ=60)
                                                         ACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTAT                                     <  SRR4302540.779440/94‑1 (MQ=60)
                                                         ACTACACCGATATTATCAGACCTTACCTGGGCTACAGCTGGGGAAGTTTCCTCGGGGCTATCTACTTTTTGATGATTATCCACGGGATTTTTAT                                     >  SRR4302540.2863447/1‑94 (MQ=60)
                                                          CTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATC                                    >  SRR4302540.940657/1‑94 (MQ=60)
                                                          CTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATC                                    <  SRR4302540.961732/94‑1 (MQ=60)
                                                          CTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATC                                    >  SRR4302540.6137051/1‑94 (MQ=60)
                                                          CTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATC                                    >  SRR4302540.6804892/1‑94 (MQ=60)
                                                           TACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCT                                   <  SRR4302540.2057617/94‑1 (MQ=60)
                                                            ACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTA                                  >  SRR4302540.8417261/1‑94 (MQ=60)
                                                            ACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTA                                  >  SRR4302540.8294941/1‑94 (MQ=60)
                                                            ACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTA                                  <  SRR4302540.5178370/94‑1 (MQ=60)
                                                             CACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTAC                                 >  SRR4302540.4733351/1‑94 (MQ=60)
                                                              ACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACT                                >  SRR4302540.2740669/1‑94 (MQ=60)
                                                              ACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACT                                <  SRR4302540.392408/94‑1 (MQ=60)
                                                               CCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTC                               >  SRR4302540.6515735/1‑94 (MQ=60)
                                                                CGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCT                              <  SRR4302540.7176707/94‑1 (MQ=60)
                                                                CGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCT                              >  SRR4302540.7983487/1‑94 (MQ=60)
                                                                CGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCT                              >  SRR4302540.6741169/1‑94 (MQ=60)
                                                                 GATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTC                             >  SRR4302540.1531763/1‑94 (MQ=60)
                                                                 GATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTC                             <  SRR4302540.9607102/94‑1 (MQ=60)
                                                                  ATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCT                            >  SRR4302540.157683/1‑94 (MQ=60)
                                                                  ATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCT                            >  SRR4302540.4766214/1‑94 (MQ=60)
                                                                  ATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCT                            <  SRR4302540.2782062/94‑1 (MQ=60)
                                                                   TATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTC                           <  SRR4302540.7444568/94‑1 (MQ=60)
                                                                    ATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCT                          >  SRR4302540.4157566/1‑94 (MQ=60)
                                                                    ATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCT                          <  SRR4302540.4488605/94‑1 (MQ=60)
                                                                    ATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCT                          >  SRR4302540.8414095/1‑94 (MQ=60)
                                                                     TTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTC                         >  SRR4302540.9171820/1‑94 (MQ=60)
                                                                     TTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTC                         <  SRR4302540.6584634/94‑1 (MQ=60)
                                                                     TTATCAGTCATTACCTGAGGAATAGCTGGTGAATGTTCCTCGGTTTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTC                         <  SRR4302540.6584930/94‑1 (MQ=60)
                                                                      TATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCC                        <  SRR4302540.9488958/94‑1 (MQ=60)
                                                                      TATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCC                        >  SRR4302540.6545509/1‑94 (MQ=60)
                                                                       ATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCG                       >  SRR4302540.3061068/1‑94 (MQ=60)
                                                                        TCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGT                      <  SRR4302540.1707458/94‑1 (MQ=60)
                                                                           GTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGT                   >  SRR4302540.7332825/1‑94 (MQ=60)
                                                                           GTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGT                   >  SRR4302540.4906176/1‑94 (MQ=60)
                                                                             CATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTT                 <  SRR4302540.9659482/94‑1 (MQ=60)
                                                                             CATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTT                 >  SRR4302540.6697521/1‑94 (MQ=60)
                                                                              ATTGCCTGGGGAAGAGCTGGGGAAATTTCCTCGGGGTTATCTTCTTTTTGAAGATTATCATAGAGATTTTTATCTACTCTCTCTCCGAGGTTTT                <  SRR4302540.9092901/94‑1 (MQ=44)
                                                                              ATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTT                >  SRR4302540.3859772/1‑94 (MQ=60)
                                                                              ATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTT                >  SRR4302540.5224943/1‑94 (MQ=60)
                                                                              ATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTT                >  SRR4302540.8317896/1‑94 (MQ=60)
                                                                              ATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTT                <  SRR4302540.10138846/94‑1 (MQ=60)
                                                                               TTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTC               <  SRR4302540.5575858/94‑1 (MQ=60)
                                                                               TTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTC               <  SRR4302540.5674945/94‑1 (MQ=60)
                                                                               TTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTC               <  SRR4302540.9171615/94‑1 (MQ=60)
                                                                                TACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCG              <  SRR4302540.6023069/94‑1 (MQ=60)
                                                                                TACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCG              <  SRR4302540.6864609/94‑1 (MQ=60)
                                                                                  CCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGAC            >  SRR4302540.7367223/1‑94 (MQ=60)
                                                                                  CCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGAC            >  SRR4302540.2654031/1‑94 (MQ=60)
                                                                                  CCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGAC            >  SRR4302540.3463235/1‑94 (MQ=60)
                                                                                  CCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGAC            <  SRR4302540.6599947/94‑1 (MQ=60)
                                                                                   CTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACA           <  SRR4302540.2406254/94‑1 (MQ=60)
                                                                                   CTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACA           <  SRR4302540.8172996/94‑1 (MQ=60)
                                                                                   CTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACA           >  SRR4302540.3954522/1‑94 (MQ=60)
                                                                                    TGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAG          <  SRR4302540.2730973/94‑1 (MQ=60)
                                                                                     GGGGAAGAGCTGGTGAATTTTCCTCGGGGTTATCTACGTTGTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGC         <  SRR4302540.3335117/94‑1 (MQ=60)
                                                                                     GGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGC         >  SRR4302540.1259849/1‑94 (MQ=60)
                                                                                     GGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGC         >  SRR4302540.6167046/1‑94 (MQ=60)
                                                                                     GGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGC         <  SRR4302540.3335118/94‑1 (MQ=60)
                                                                                     GGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCAACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGC         <  SRR4302540.2854112/94‑1 (MQ=60)
                                                                                      GGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCG        <  SRR4302540.9511014/94‑1 (MQ=60)
                                                                                      GGAAAGAGCTGGGGAATGTTCCTCGGTGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTGCTCTCTCTCCGTGGTTTTCGACAGCG        <  SRR4302540.9511013/94‑1 (MQ=60)
                                                                                       GGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGTTTTTCGACAGCCC       >  SRR4302540.7557389/1‑94 (MQ=60)
                                                                                       GGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGC       >  SRR4302540.6275684/1‑94 (MQ=60)
                                                                                        GAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCC      <  SRR4302540.2725485/94‑1 (MQ=60)
                                                                                         AAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCT     <  SRR4302540.1108016/94‑1 (MQ=60)
                                                                                         AAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCT     <  SRR4302540.2687379/94‑1 (MQ=60)
                                                                                          AGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTC    <  SRR4302540.8089191/94‑1 (MQ=60)
                                                                                           GAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTCG   >  SRR4302540.2560673/1‑94 (MQ=60)
                                                                                            AGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTCGT  >  SRR4302540.8208638/1‑94 (MQ=60)
                                                                                            AGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTCGT  >  SRR4302540.3478065/1‑94 (MQ=60)
                                                                                             |                                                                                            
CCTGGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAACTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTCGT  >  NC_000913/3698373‑3698558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑