Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,698,466	A→G	N92S (AAC→AGC)	yhjV →	putative transporter protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,698,466	0	A	G	100.0%	835.0 / NA	258	N92S (AAC→AGC)	yhjV	putative transporter protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (140/118); total (140/118)

Only 100 of 262 total aligned reads displayed.

GGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAACTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCT  >  NC_000913/3698376‑3698555

gggTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCt                                                                                         >  1:265012/1‑93 (MQ=255)

 ggTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTg                                                                                        <  2:4731295/93‑1 (MQ=255)

   tAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTggg                                                                                      <  2:576343/93‑1 (MQ=255)

     gTGCAGGACATTTATTTAAAAGCCCTTTCTCAAAGCGATTCCTGTAATGACTACACCGATATTACCAGTCATTACCTGGGGAAGAGCTGGGGa                                                                                    <  2:5379499/93‑1 (MQ=255)

     gTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGa                                                                                    >  2:4502412/1‑93 (MQ=255)

      tGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGaa                                                                                   <  2:2208287/93‑1 (MQ=255)

       gCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAt                                                                                  >  1:3095234/1‑93 (MQ=255)

       gCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAt                                                                                  <  1:934535/93‑1 (MQ=255)

        cANGACATTTATTTAAAAACCCNTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAtt                                                                                 <  1:4942524/93‑1 (MQ=255)

        cAGGACATTTATTTAAAACCCCTTTCTGAAAGCGATGCCTGTAATGACTACACCGATATTATCAGACATTACCTGGGGAAGAGCTGGGGAAtt                                                                                 <  2:391295/93‑1 (MQ=255)

        cAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAtt                                                                                 <  2:4883937/93‑1 (MQ=255)

         aGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAttt                                                                                >  1:4747938/1‑93 (MQ=255)

          ggccATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAtttt                                                                               >  2:3479189/4‑93 (MQ=255)

          ggACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAtttt                                                                               >  2:483052/1‑93 (MQ=255)

          ggACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAtttt                                                                               >  1:6295582/1‑93 (MQ=255)

          ggACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAtttt                                                                               >  2:4532291/1‑93 (MQ=255)

           gACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTc                                                                              <  1:2091621/93‑1 (MQ=255)

           gACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTc                                                                              >  1:4610433/1‑93 (MQ=255)

            aCATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTcc                                                                             >  1:5991596/1‑93 (MQ=255)

             cATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCt                                                                            <  1:2431466/93‑1 (MQ=255)

              atttatttAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTc                                                                           <  2:5936890/93‑1 (MQ=255)

                 tatttaAAAACTCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCggg                                                                        <  1:1280336/93‑1 (MQ=255)

                   tttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGt                                                                      <  1:342851/93‑1 (MQ=255)

                   tttaAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGt                                                                      >  1:2020121/1‑93 (MQ=255)

                     taAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTa                                                                    >  2:6206161/1‑93 (MQ=255)

                      aaaaaCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTAt                                                                   <  1:5721073/93‑1 (MQ=255)

                      aaaaaCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTAt                                                                   >  2:2831943/1‑93 (MQ=255)

                        aaaCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCt                                                                 >  1:1923477/1‑93 (MQ=255)

                        aaaCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCt                                                                 <  2:5355125/93‑1 (MQ=255)

                          aCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTat                                                               >  2:6252373/1‑92 (MQ=255)

                          aCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTAc                                                               <  2:1039645/93‑1 (MQ=255)

                          aCCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTAc                                                               <  1:5042717/93‑1 (MQ=255)

                           cccTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACt                                                              <  2:3789333/93‑1 (MQ=255)

                           cccTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACt                                                              >  1:4505691/1‑93 (MQ=255)

                            ccTTTCTGAAAGCGATTCCTGTAATGACTACGCCGATATTATCAGTCATTGCCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACtt                                                             <  1:3578455/93‑1 (MQ=255)

                            ccTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACtt                                                             <  1:6150156/93‑1 (MQ=255)

                            ccTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACtt                                                             <  2:2435587/93‑1 (MQ=255)

                             cTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACttt                                                            <  1:3885064/93‑1 (MQ=255)

                             cTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACttt                                                            >  1:320896/1‑93 (MQ=255)

                              tttCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACtttt                                                           >  2:147181/1‑93 (MQ=255)

                               ttCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACttttt                                                          >  1:230408/1‑93 (MQ=255)

                                tCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtg                                                         >  1:2775422/1‑93 (MQ=255)

                                 cTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtga                                                        <  2:1695214/93‑1 (MQ=255)

                                 cTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtga                                                        >  2:5886568/1‑93 (MQ=255)

                                 cTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtga                                                        >  2:3762570/1‑93 (MQ=255)

                                 cTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtga                                                        >  1:2025612/1‑93 (MQ=255)

                                  tGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtgat                                                       <  2:297045/93‑1 (MQ=255)

                                   gAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtgatg                                                      <  1:2551482/93‑1 (MQ=255)

                                   gAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtgatg                                                      >  2:178680/1‑93 (MQ=255)

                                   gAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtgatg                                                      >  2:4167762/1‑93 (MQ=255)

                                   gAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGATATCTACTTTTtgatg                                                      >  2:1124411/1‑93 (MQ=255)

                                    aaaGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTtgatga                                                     >  1:973478/1‑93 (MQ=255)

                                      aGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAtt                                                   >  1:5902508/1‑93 (MQ=255)

                                      aGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAtt                                                   <  1:4153854/93‑1 (MQ=255)

                                      aGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAtt                                                   >  1:1528488/1‑93 (MQ=255)

                                      aGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAtt                                                   <  2:1923477/93‑1 (MQ=255)

                                       gCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTa                                                  <  2:4382661/93‑1 (MQ=255)

                                        cGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTAt                                                 <  2:5154540/93‑1 (MQ=255)

                                        cGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTAt                                                 <  1:802771/93‑1 (MQ=255)

                                          aTTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATcc                                               >  2:4639569/1‑93 (MQ=255)

                                            tCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCAc                                             >  1:6008056/1‑93 (MQ=255)

                                            tCCTGTAATGACTACACCGATATTATCAGTCATTACCGGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCAc                                             <  2:2123973/93‑1 (MQ=255)

                                              cTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACgg                                           >  1:3673294/1‑93 (MQ=255)

                                                gTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGa                                         <  2:2240918/93‑1 (MQ=255)

                                                 tAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAt                                        <  1:1632451/93‑1 (MQ=255)

                                                 tAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAt                                        >  1:694920/1‑93 (MQ=255)

                                                   aTGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAttt                                      >  1:1716443/1‑93 (MQ=255)

                                                    tGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGCtttt                                     >  1:4326917/1‑93 (MQ=255)

                                                      aCTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTa                                   >  2:121693/1‑93 (MQ=255)

                                                        tACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATc                                 <  1:5235496/93‑1 (MQ=255)

                                                          cacCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTa                               >  1:5145002/1‑93 (MQ=255)

                                                           acCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTAc                              <  2:1327803/93‑1 (MQ=255)

                                                           acCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTAc                              >  2:5975553/1‑93 (MQ=255)

                                                           acCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTAc                              >  2:3313955/1‑93 (MQ=255)

                                                           acCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTAc                              >  2:498284/1‑93 (MQ=255)

                                                           acCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTAATTTTTGATGATTATACACGGGATTTTTATCTAc                              >  1:1068591/1‑93 (MQ=255)

                                                            ccGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTAct                             >  1:3742700/1‑93 (MQ=255)

                                                            ccGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTAct                             >  1:5689646/1‑93 (MQ=255)

                                                             cGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActc                            <  2:3596048/93‑1 (MQ=255)

                                                              gATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActct                           >  2:5660256/1‑93 (MQ=255)

                                                                tattatCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctct                         >  1:121836/1‑93 (MQ=255)

                                                                 attatCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctctc                        >  1:3304715/1‑93 (MQ=255)

                                                                  ttatCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctctct                       >  2:1978624/1‑93 (MQ=255)

                                                                  ttatCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTActctctct                       >  1:5284804/1‑93 (MQ=255)

                                                                     tCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCg                    <  2:2401781/93‑1 (MQ=255)

                                                                       aGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTg                  <  2:4105685/93‑1 (MQ=255)

                                                                          cATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGtt               >  2:789002/1‑93 (MQ=255)

                                                                            ttACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGtttt             >  1:5371794/1‑93 (MQ=255)

                                                                             tACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTc            >  1:1367447/1‑93 (MQ=255)

                                                                              aCCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCg           >  2:2061180/1‑93 (MQ=255)

                                                                                cTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTTGAc         >  2:5465212/1‑93 (MQ=255)

                                                                                cTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGAc         >  1:5465243/1‑93 (MQ=255)

                                                                                cTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGAc         <  1:4849517/93‑1 (MQ=255)

                                                                                cTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGAc         <  2:3140533/93‑1 (MQ=255)

                                                                                 tGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACa        >  1:4284675/1‑93 (MQ=255)

                                                                                 tGGGGAAGAGCTGGGGAATTTTCCTCGGGGATATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTATCTCTCCGTGGTTTTCGACa        >  1:625996/1‑93 (MQ=255)

                                                                                  ggggAAGAGCTGGGGAATTCTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAg       <  2:3387769/93‑1 (MQ=255)

                                                                                   gggAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAgc      >  2:2673704/1‑93 (MQ=255)

                                                                                   gggAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTATCTCTCCGTGGTTTTCGACAgc      <  2:1581233/93‑1 (MQ=255)

                                                                                     gaagagCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAgcgc    >  1:1413879/1‑93 (MQ=255)

GGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAACTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCT  >  NC_000913/3698376‑3698555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAACTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTCG  >  NC_000913/3698375‑3698557

TGGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCT                                                                                           >  SRR4302533.266624/1‑94 (MQ=60)

  GGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGG                                                                                         >  SRR4302533.2315655/1‑94 (MQ=60)

    TAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGG                                                                                       <  SRR4302533.2547015/94‑1 (MQ=60)

    TAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGG                                                                                       <  SRR4302533.337659/94‑1 (MQ=60)

     AGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGA                                                                                      >  SRR4302533.468635/1‑94 (MQ=60)

      GTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAA                                                                                     >  SRR4302533.3479945/1‑94 (MQ=60)

       TGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAAT                                                                                    >  SRR4302533.3114263/1‑94 (MQ=60)

        GCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATT                                                                                   <  SRR4302533.940024/94‑1 (MQ=60)

        GCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATT                                                                                   <  SRR4302533.843860/94‑1 (MQ=60)

        GCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATT                                                                                   <  SRR4302533.6043911/94‑1 (MQ=60)

         CANGACATTTATTTAAAAACCCNTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTT                                                                                  <  SRR4302533.4972442/94‑1 (MQ=60)

         CAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTT                                                                                  >  SRR4302533.4776721/1‑94 (MQ=60)

          AGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTT                                                                                 >  SRR4302533.6333127/1‑94 (MQ=60)

          AGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTT                                                                                 >  SRR4302533.5734788/1‑94 (MQ=60)

           GGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTC                                                                                >  SRR4302533.4638354/1‑94 (MQ=60)

            GACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCC                                                                               <  SRR4302533.2104503/94‑1 (MQ=60)

            GACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCC                                                                               >  SRR4302533.6027888/1‑94 (MQ=60)

             ACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCT                                                                              >  SRR4302533.3699537/1‑94 (MQ=60)

              CATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTC                                                                             <  SRR4302533.2446494/94‑1 (MQ=60)

               ATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCG                                                                            >  SRR4302533.2245614/1‑94 (MQ=60)

                TTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGG                                                                           <  SRR4302533.241740/94‑1 (MQ=60)

                 TTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGG                                                                          <  SRR4302533.2972597/94‑1 (MQ=60)

                 TTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGG                                                                          >  SRR4302533.504812/1‑94 (MQ=60)

                 TTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGG                                                                          >  SRR4302533.5022873/1‑94 (MQ=60)

                 TTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGG                                                                          >  SRR4302533.4524381/1‑94 (MQ=60)

                 TTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGG                                                                          >  SRR4302533.6307859/1‑94 (MQ=60)

                  TATTTAAAAACTCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGG                                                                         <  SRR4302533.1288033/94‑1 (MQ=60)

                  TATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGG                                                                         <  SRR4302533.1717629/94‑1 (MQ=60)

                  TATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGG                                                                         >  SRR4302533.634946/1‑94 (MQ=60)

                   ATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGT                                                                        >  SRR4302533.2032562/1‑94 (MQ=60)

                   ATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGT                                                                        >  SRR4302533.1768716/1‑94 (MQ=60)

                    TTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTT                                                                       >  SRR4302533.947752/1‑94 (MQ=60)

                    TTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTT                                                                       <  SRR4302533.344946/94‑1 (MQ=60)

                     TTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTA                                                                      >  SRR4302533.2610271/1‑94 (MQ=60)

                       AAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATC                                                                    <  SRR4302533.5755615/94‑1 (MQ=60)

                       AAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATC                                                                    >  SRR4302533.5810740/1‑94 (MQ=60)

                       AAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATC                                                                    >  SRR4302533.6018002/1‑94 (MQ=60)

                        AAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCT                                                                   <  SRR4302533.204801/94‑1 (MQ=60)

                        AAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCT                                                                   >  SRR4302533.1935213/1‑94 (MQ=60)

                           ACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACT                                                                <  SRR4302533.5073236/94‑1 (MQ=60)

                           ACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACT                                                                >  SRR4302533.4532983/1‑94 (MQ=60)

                            CCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTT                                                               >  SRR4302533.6112339/1‑94 (MQ=60)

                             CCTTTCTGAAAGCGATTCCTGTAATGACTACGCCGATATTATCAGTCATTGCCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTT                                                              <  SRR4302533.3600505/94‑1 (MQ=60)

                             CCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTT                                                              >  SRR4302533.5233471/1‑94 (MQ=60)

                             CCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTT                                                              >  SRR4302533.322858/1‑94 (MQ=60)

                             CCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTT                                                              <  SRR4302533.6187176/94‑1 (MQ=60)

                             CCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTT                                                              >  SRR4302533.2010402/1‑94 (MQ=60)

                              CTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTT                                                             <  SRR4302533.3908767/94‑1 (MQ=60)

                               TTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTT                                                            >  SRR4302533.231836/1‑94 (MQ=60)

                               TTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTT                                                            <  SRR4302533.4907286/94‑1 (MQ=60)

                               TTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTT                                                            <  SRR4302533.2762682/94‑1 (MQ=60)

                                TTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTG                                                           >  SRR4302533.2792466/1‑94 (MQ=60)

                                TTCTGAAAGCGATTCCTGTAATGACAACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTG                                                           <  SRR4302533.4351808/94‑1 (MQ=60)

                                 TCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGA                                                          >  SRR4302533.2038118/1‑94 (MQ=60)

                                  CTGAAAGCGATTCCTGTAATGACTACACCGATATTATCGGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGAT                                                         >  SRR4302533.6271832/1‑94 (MQ=60)

                                  CTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGAT                                                         >  SRR4302533.3668156/1‑94 (MQ=60)

                                    GAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGA                                                       <  SRR4302533.2567185/94‑1 (MQ=60)

                                    GAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGA                                                       >  SRR4302533.4302014/1‑94 (MQ=60)

                                    GAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGA                                                       >  SRR4302533.979193/1‑94 (MQ=60)

                                     AAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGAT                                                      >  SRR4302533.3324598/1‑94 (MQ=60)

                                     AAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGGTATCTACTTTTTGATTAT                                                      >  SRR4302533.469438/1‑94 (MQ=60)

                                      AAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATT                                                     >  SRR4302533.5938151/1‑94 (MQ=60)

                                      AAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATT                                                     >  SRR4302533.1537684/1‑94 (MQ=60)

                                       AGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTA                                                    <  SRR4302533.4179024/94‑1 (MQ=60)

                                       AGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTA                                                    <  SRR4302533.5298899/94‑1 (MQ=60)

                                        GCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTAT                                                   >  SRR4302533.4255016/1‑94 (MQ=60)

                                        GCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTAT                                                   <  SRR4302533.890798/94‑1 (MQ=60)

                                         CGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATC                                                  <  SRR4302533.807486/94‑1 (MQ=60)

                                          GATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCC                                                 <  SRR4302533.5371690/94‑1 (MQ=60)

                                          GATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCC                                                 >  SRR4302533.3906020/1‑94 (MQ=60)

                                          GATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCC                                                 <  SRR4302533.5716169/94‑1 (MQ=60)

                                           ATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCA                                                >  SRR4302533.3169920/1‑94 (MQ=60)

                                            TTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCAC                                               >  SRR4302533.6044458/1‑94 (MQ=60)

                                            TTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCAC                                               >  SRR4302533.113793/1‑94 (MQ=60)

                                            TTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCAC                                               <  SRR4302533.6027531/94‑1 (MQ=60)

                                            TTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCAC                                               >  SRR4302533.4638283/1‑94 (MQ=60)

                                            TTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCAC                                               <  SRR4302533.3507200/94‑1 (MQ=60)

                                              CCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGG                                             >  SRR4302533.3695868/1‑94 (MQ=60)

                                              CCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGG                                             >  SRR4302533.1327159/1‑94 (MQ=60)

                                               CTGTAATGACTACACCGATATTATCATTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGG                                            >  SRR4302533.1233860/1‑94 (MQ=60)

                                               CTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGG                                            >  SRR4302533.4105857/1‑94 (MQ=60)

                                                TGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGA                                           <  SRR4302533.5146742/94‑1 (MQ=60)

                                                TGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGA                                           >  SRR4302533.5826659/1‑94 (MQ=60)

                                                 GTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGAT                                          >  SRR4302533.699027/1‑94 (MQ=60)

                                                  TAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATT                                         >  SRR4302533.5699833/1‑94 (MQ=60)

                                                  TAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATT                                         <  SRR4302533.1642339/94‑1 (MQ=60)

                                                   AATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTT                                        <  SRR4302533.4850243/94‑1 (MQ=60)

                                                   AATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTT                                        >  SRR4302533.1726849/1‑94 (MQ=60)

                                                   AATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTT                                        >  SRR4302533.977122/1‑94 (MQ=60)

                                                    ATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGCTTTT                                       >  SRR4302533.4352982/1‑94 (MQ=60)

                                                        CTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATC                                   >  SRR4302533.1387214/1‑94 (MQ=60)

                                                        CTACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATC                                   <  SRR4302533.4443152/94‑1 (MQ=60)

                                                         TACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCT                                  <  SRR4302533.6305521/94‑1 (MQ=60)

                                                         TACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCT                                  <  SRR4302533.5266976/94‑1 (MQ=60)

                                                          ACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTC                                 >  SRR4302533.1393576/1‑94 (MQ=60)

                                                          ACACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTA                                 >  SRR4302533.5176093/1‑94 (MQ=60)

                                                           CACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTAC                                <  SRR4302533.1445182/94‑1 (MQ=60)

                                                           CACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTAC                                >  SRR4302533.1578817/1‑94 (MQ=60)

                                                           CACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTAATTTTTGATGATTATACACGGGATTTTTATCTAC                                >  SRR4302533.1074883/1‑94 (MQ=60)

                                                            ACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACT                               <  SRR4302533.5440065/94‑1 (MQ=60)

                                                            ACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACT                               >  SRR4302533.3136867/1‑94 (MQ=60)

                                                            ACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACT                               >  SRR4302533.3765655/1‑94 (MQ=60)

                                                            ACCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACT                               >  SRR4302533.5724012/1‑94 (MQ=60)

                                                             CCGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTC                              >  SRR4302533.5314332/1‑94 (MQ=60)

                                                              CGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCT                             <  SRR4302533.2327683/94‑1 (MQ=60)

                                                              CGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCT                             <  SRR4302533.3025595/94‑1 (MQ=60)

                                                              CGATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCT                             >  SRR4302533.5079930/1‑94 (MQ=60)

                                                                ATATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCT                           >  SRR4302533.122603/1‑94 (MQ=60)

                                                                 TATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTC                          >  SRR4302533.3325123/1‑94 (MQ=60)

                                                                  ATTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCT                         >  SRR4302533.5316461/1‑94 (MQ=60)

                                                                   TTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTC                        >  SRR4302533.20377/1‑94 (MQ=60)

                                                                   TTATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTC                        <  SRR4302533.4100884/94‑1 (MQ=60)

                                                                    TATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCC                       >  SRR4302533.203841/1‑94 (MQ=60)

                                                                    TATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCC                       <  SRR4302533.3348034/94‑1 (MQ=60)

                                                                     ATCAGTCATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCG                      >  SRR4302533.653331/1‑94 (MQ=60)

                                                                           CATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTT                >  SRR4302533.1726013/1‑94 (MQ=60)

                                                                           CATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTT                <  SRR4302533.4793243/94‑1 (MQ=60)

                                                                            ATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTT               >  SRR4302533.2019812/1‑94 (MQ=60)

                                                                            ATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTT               >  SRR4302533.3727395/1‑94 (MQ=60)

                                                                            ATTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTT               >  SRR4302533.5404068/1‑94 (MQ=60)

                                                                             TTACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTC              >  SRR4302533.1375667/1‑94 (MQ=60)

                                                                               TCCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGA            <  SRR4302533.1246775/94‑1 (MQ=60)

                                                                               ACCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGA            <  SRR4302533.5461061/94‑1 (MQ=60)

                                                                                CCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGAC           >  SRR4302533.709168/1‑94 (MQ=60)

                                                                                CCTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGAC           >  SRR4302533.5498179/1‑94 (MQ=60)

                                                                                 CTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACA          <  SRR4302533.4878906/94‑1 (MQ=60)

                                                                                 CTGGGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACA          >  SRR4302533.4310422/1‑94 (MQ=60)

                                                                                 CTGGGGAAGAGCTGGGGAATTTTCCTCGGGGATATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTATCTCTCCGTGGTTTTCGACA          >  SRR4302533.629671/1‑94 (MQ=60)

                                                                                    GGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCG       >  SRR4302533.6069807/1‑94 (MQ=60)

                                                                                    GGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCG       <  SRR4302533.1439936/94‑1 (MQ=60)

                                                                                    GGGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCG       <  SRR4302533.1003836/94‑1 (MQ=60)

                                                                                     GGAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGC      >  SRR4302533.1422431/1‑94 (MQ=60)

                                                                                      GAAGAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCC     >  SRR4302533.2604886/1‑94 (MQ=60)

                                                                                         GAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTCG  >  SRR4302533.300954/1‑94 (MQ=60)

                                                                                         GAGCTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCGCTCCGTGGTTTTCGACAGCGCCTCG  >  SRR4302533.6125118/1‑94 (MQ=60)

TGGGTAGTGCAGGACATTTATTTAAAAACCCTTTCTGAAAGCGATTCCTGTAATGACTACACCGATATTATCAGTCATTACCTGGGGAAGAACTGGGGAATTTTCCTCGGGGTTATCTACTTTTTGATGATTATCCACGGGATTTTTATCTACTCTCTCTCCGTGGTTTTCGACAGCGCCTCG  >  NC_000913/3698375‑3698557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`