Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,731,386 T→C V13A (GTA→GCA)  xylH → XylH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,731,3860TC99.6% 1427.4 / ‑4.7 447V13A (GTA→GCA) xylHXylH
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (223/222);  total (224/223)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01

Only 100 of 460 total aligned reads displayed.

TCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGTACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCT  >  NC_000913/3731296‑3731475
                                                                                          |                                                                                         
tCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCAc                                                                                         >  1:3583965/1‑93 (MQ=255)
tCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCAc                                                                                         <  1:1822711/93‑1 (MQ=255)
 cATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCAcc                                                                                        <  1:5308054/93‑1 (MQ=255)
    aaCCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGAc                                                                                     <  1:9313317/93‑1 (MQ=255)
     aCCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACa                                                                                    <  1:3271772/93‑1 (MQ=255)
      ccTGACTCAGGAGCAGGTGATGGAAGCCGCATTTAGGAGCGAACATCATGTCGAAAAGCACTCCGTCTGGAGTGAAATTGGCCGCAACGACac                                                                                   >  2:3218104/1‑92 (MQ=255)
      ccTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACAt                                                                                   <  2:6812561/93‑1 (MQ=255)
       cTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAGCATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATc                                                                                  <  2:674786/93‑1 (MQ=255)
       cTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATc                                                                                  >  2:343636/1‑93 (MQ=255)
         gACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCg                                                                                <  1:6010840/93‑1 (MQ=255)
          aCTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCgg                                                                               >  1:8261843/1‑93 (MQ=255)
           cTCAGGAGCAGGGGATGGAAGCCGCATTTAGGAGGGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGCCCTCACCGACAGCCggg                                                                              >  2:6861498/1‑92 (MQ=255)
            tCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTg                                                                             >  2:4128328/1‑93 (MQ=255)
            tCAGGAGCAGGGGGTGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTg                                                                             <  1:7695056/93‑1 (MQ=255)
             cAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTgg                                                                            <  2:1018016/93‑1 (MQ=255)
               ggAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCt                                                                          <  1:9503143/93‑1 (MQ=255)
               ggAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCt                                                                          >  2:5651960/1‑93 (MQ=255)
               ggAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTAAAGTGAAATTGGCCGCACCGACATCCGGTGGCt                                                                          >  2:7046672/1‑93 (MQ=255)
                  gCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTtct                                                                       >  2:1242516/1‑93 (MQ=255)
                    aGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCTTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTcc                                                                     <  2:7493027/93‑1 (MQ=255)
                    aGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTcc                                                                     <  2:4666196/93‑1 (MQ=255)
                     ggTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCg                                                                    >  2:1554394/1‑93 (MQ=255)
                     ggTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCg                                                                    >  2:9468358/1‑93 (MQ=255)
                      gTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCgg                                                                   <  1:2533256/93‑1 (MQ=255)
                       tGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCggg                                                                  >  2:1703116/1‑93 (MQ=255)
                       tGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCggg                                                                  >  1:8821407/1‑93 (MQ=255)
                       tGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCggg                                                                  >  2:812655/1‑93 (MQ=255)
                       tGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCggg                                                                  >  1:839536/1‑93 (MQ=255)
                        gATGGAAGCCGCATTTAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGc                                                                 <  1:2272942/93‑1 (MQ=255)
                        gATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGTGc                                                                 <  2:7199278/93‑1 (MQ=255)
                          tGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTg                                                               >  2:391126/1‑93 (MQ=255)
                          tGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTg                                                               >  1:10043564/1‑93 (MQ=255)
                            gAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGaa                                                             <  2:8724735/93‑1 (MQ=255)
                            gAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGaa                                                             <  1:1752730/93‑1 (MQ=255)
                             aaGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGaaa                                                            >  1:7136863/1‑93 (MQ=255)
                             aaGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGaaa                                                            <  1:9658444/93‑1 (MQ=255)
                             aaGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGaaa                                                            >  1:737984/1‑93 (MQ=255)
                               gCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGACATc                                                          >  1:3689481/1‑93 (MQ=255)
                                ccGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCa                                                         >  2:2428059/1‑93 (MQ=255)
                                 cGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCAc                                                        <  1:5497392/93‑1 (MQ=255)
                                 cGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCAc                                                        >  1:2751947/1‑93 (MQ=255)
                                  gCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACt                                                       <  1:4781711/93‑1 (MQ=255)
                                   cATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTg                                                      <  2:5998739/93‑1 (MQ=255)
                                   cATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTg                                                      <  1:6654496/93‑1 (MQ=255)
                                     ttGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGaa                                                    >  1:6468022/1‑93 (MQ=255)
                                     ttGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGaa                                                    >  2:1121341/1‑93 (MQ=255)
                                     ttGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGaa                                                    >  2:5920948/1‑93 (MQ=255)
                                       gaggagCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAAtt                                                  >  2:5238739/1‑93 (MQ=255)
                                        aggagCGAACATCATGTCGAAAAGCACTCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAAttt                                                 <  1:4484672/93‑1 (MQ=255)
                                           agCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCa                                              <  1:6989837/93‑1 (MQ=255)
                                            gCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAg                                             <  1:157521/93‑1 (MQ=255)
                                            gCGAACATCATGCCGAAAAGCAATCCGTCTGAAGTTAAAGTGGCCGCACCGACATCCGGTTGCTTCTCCGGGCTGAAATCACTGAATTTGCAg                                             <  1:8130498/93‑1 (MQ=255)
                                              gAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGt                                           <  2:5504119/93‑1 (MQ=255)
                                               aaCATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTc                                          >  1:7897968/1‑93 (MQ=255)
                                               aaCATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTc                                          >  2:4028064/1‑93 (MQ=255)
                                                aCATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGCAATCACTGAATCTGCAGGTCt                                         >  2:4463171/1‑93 (MQ=255)
                                                aCATCATGTCGAAAAGCAATCCGGCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCt                                         <  2:3847843/93‑1 (MQ=255)
                                                 catcatGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCtt                                        >  1:613376/1‑93 (MQ=255)
                                                 catcatGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCtt                                        <  2:7387528/93‑1 (MQ=255)
                                                 catcatGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCtt                                        >  1:2139034/1‑93 (MQ=255)
                                                  atcatGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTc                                       <  2:6310576/93‑1 (MQ=255)
                                                    catGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGt                                     <  2:6461850/93‑1 (MQ=255)
                                                      tGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGtgt                                   >  2:3716053/1‑92 (MQ=255)
                                                      tGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGtga                                   <  2:8560652/93‑1 (MQ=255)
                                                        tCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGtgatg                                 <  2:2698416/93‑1 (MQ=255)
                                                        tCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGtgatg                                 >  1:3834212/1‑93 (MQ=255)
                                                         cGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGtgatga                                <  2:8496460/93‑1 (MQ=255)
                                                          gAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAAGTTGCAGGTCTTCGTgatgat                               >  2:2229747/1‑93 (MQ=255)
                                                           aaaaGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGAtt                              >  1:2017862/1‑93 (MQ=255)
                                                           aaaaGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGAtt                              >  1:7297454/1‑93 (MQ=255)
                                                            aaaGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTg                             >  2:9351750/1‑93 (MQ=255)
                                                             aaGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGc                            <  1:1375541/93‑1 (MQ=255)
                                                              aGCAATCCGGCTGAAGGGAAATTTGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGGCTTCGTGATGATTGCa                           >  2:6580653/1‑93 (MQ=255)
                                                               gCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAg                          >  2:7991035/1‑93 (MQ=255)
                                                                 aaTCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCt                        <  2:3074167/93‑1 (MQ=255)
                                                                 aaTCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCt                        >  2:9015672/1‑93 (MQ=255)
                                                                   tCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTat                      >  2:9757581/1‑93 (MQ=255)
                                                                    ccGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTatc                     <  1:4127245/93‑1 (MQ=255)
                                                                      gTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTatcat                   <  1:484465/93‑1 (MQ=255)
                                                                      gTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTatcat                   >  2:7726568/1‑93 (MQ=255)
                                                                       tCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTatcatc                  >  2:5098453/1‑93 (MQ=255)
                                                                       tCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTatcatc                  >  1:1150252/1‑93 (MQ=255)
                                                                       tCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTatcatc                  <  1:3005277/93‑1 (MQ=255)
                                                                       tCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTatcatc                  <  2:1813157/93‑1 (MQ=255)
                                                                        ttGAAGTGAATTTGGCCGCACCGACATCCGGTTGCTTCTCCGGGCTGAAATCACTGAATATGCAGGTCGATGTTATGATCGCAGCTATCATCg                 >  1:8954763/2‑93 (MQ=255)
                                                                         tGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTTCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGc                >  1:4596665/1‑93 (MQ=255)
                                                                         tGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGc                >  1:9895086/1‑93 (MQ=255)
                                                                          gcaGTGAAATTGGCCGCCCCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCa               <  1:3097143/91‑1 (MQ=255)
                                                                          gAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATTGCa               >  1:7797753/1‑93 (MQ=255)
                                                                          gAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCa               <  1:4073966/93‑1 (MQ=255)
                                                                           aaGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCaa              <  1:144317/93‑1 (MQ=255)
                                                                            aGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAAt             <  2:488232/93‑1 (MQ=255)
                                                                             gTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATc            <  1:5589279/93‑1 (MQ=255)
                                                                             gTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATc            <  1:5115371/93‑1 (MQ=255)
                                                                              tGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCa           <  2:8291723/93‑1 (MQ=255)
                                                                                 aaTTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGc        <  2:5788419/93‑1 (MQ=255)
                                                                                    tGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGt     <  1:8603787/93‑1 (MQ=255)
                                                                                     ggCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGtt    >  2:1352182/1‑93 (MQ=255)
                                                                                     ggCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGtt    <  2:4276613/93‑1 (MQ=255)
                                                                                      gCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTc   >  1:5737023/1‑93 (MQ=255)
                                                                                          |                                                                                         
TCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGTACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCT  >  NC_000913/3731296‑3731475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 241 total aligned reads displayed.
AAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGTACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCTTTAC  >  NC_000913/3731293‑3731479
                                                                                             |                                                                                             
AAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGC                                                                                               <  SRR4302540.3142690/94‑1 (MQ=60)
  ATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCAC                                                                                             >  SRR4302540.3623112/1‑94 (MQ=60)
  ATCATAACCTGACGCAGGAGCGGGTGATGGTAGCCGCAGTGAGGAGCGGCCATCATGCCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCAC                                                                                             <  SRR4302540.7229419/94‑1 (MQ=60)
   TCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACC                                                                                            <  SRR4302540.9861608/94‑1 (MQ=60)
   TCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACC                                                                                            <  SRR4302540.1842630/94‑1 (MQ=60)
   TCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACC                                                                                            <  SRR4302540.8868269/94‑1 (MQ=60)
    CATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCG                                                                                           >  SRR4302540.8857452/1‑94 (MQ=60)
    CATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCG                                                                                           <  SRR4302540.6559922/94‑1 (MQ=60)
    CATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCG                                                                                           <  SRR4302540.5366148/94‑1 (MQ=60)
    CATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCG                                                                                           >  SRR4302540.8106183/1‑94 (MQ=60)
    CATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCG                                                                                           >  SRR4302540.4749947/1‑94 (MQ=60)
     ATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGA                                                                                          >  SRR4302540.7346294/1‑94 (MQ=60)
      TAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGAC                                                                                         <  SRR4302540.5041728/94‑1 (MQ=60)
      TAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGAC                                                                                         >  SRR4302540.2028224/1‑94 (MQ=60)
      TAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGAC                                                                                         <  SRR4302540.1672792/94‑1 (MQ=60)
       AACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACA                                                                                        <  SRR4302540.9424480/94‑1 (MQ=60)
       AACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACA                                                                                        <  SRR4302540.959598/94‑1 (MQ=60)
        ACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACAT                                                                                       <  SRR4302540.3307483/94‑1 (MQ=60)
        ACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACAT                                                                                       <  SRR4302540.1125905/94‑1 (MQ=60)
        ACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACAT                                                                                       <  SRR4302540.1125904/94‑1 (MQ=60)
        ACCTAGCTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACAT                                                                                       <  SRR4302540.3307481/94‑1 (MQ=60)
         CCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATC                                                                                      >  SRR4302540.7146347/1‑94 (MQ=60)
          CTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCG                                                                                     >  SRR4302540.2777903/1‑94 (MQ=60)
          CTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCC                                                                                     <  SRR4302540.10086143/94‑1 (MQ=60)
          CTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCC                                                                                     >  SRR4302540.5298502/1‑94 (MQ=60)
          CTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTAGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCC                                                                                     >  SRR4302540.2669121/1‑94 (MQ=60)
          CTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGACCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCC                                                                                     <  SRR4302540.2397550/94‑1 (MQ=60)
           TGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCG                                                                                    <  SRR4302540.7819912/94‑1 (MQ=60)
            GACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGG                                                                                   >  SRR4302540.8357848/1‑94 (MQ=60)
            GACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGG                                                                                   <  SRR4302540.6077495/94‑1 (MQ=60)
            GACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGG                                                                                   >  SRR4302540.5717797/1‑94 (MQ=60)
             ACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGT                                                                                  <  SRR4302540.2967715/94‑1 (MQ=60)
             ACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGT                                                                                  <  SRR4302540.4454021/94‑1 (MQ=60)
             ACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGT                                                                                  <  SRR4302540.2176494/94‑1 (MQ=60)
             ACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGG                                                                                  >  SRR4302540.3087707/1‑94 (MQ=60)
              CTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTG                                                                                 >  SRR4302540.665813/1‑94 (MQ=60)
               TCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGG                                                                                <  SRR4302540.7953058/94‑1 (MQ=60)
               TCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAACTGGCCGCACCGACATCCGGTGG                                                                                <  SRR4302540.5343203/94‑1 (MQ=60)
               TCAGGAGCAGGGGGTGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGG                                                                                <  SRR4302540.7782709/94‑1 (MQ=60)
                CAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTTGCCGCACCGACATCCGGTGGC                                                                               <  SRR4302540.7660312/94‑1 (MQ=60)
                 AGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCT                                                                              <  SRR4302540.1509476/94‑1 (MQ=60)
                  GGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTT                                                                             <  SRR4302540.9615743/94‑1 (MQ=60)
                  GGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTT                                                                             <  SRR4302540.1228415/94‑1 (MQ=60)
                   GAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTC                                                                            >  SRR4302540.6061420/1‑94 (MQ=60)
                    AGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTTGCCGCACCGACATCCGGTGGCTTCT                                                                           <  SRR4302540.4872165/94‑1 (MQ=60)
                    AGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCT                                                                           <  SRR4302540.4872166/94‑1 (MQ=60)
                    AGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCT                                                                           <  SRR4302540.1621406/94‑1 (MQ=60)
                     GCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTC                                                                          >  SRR4302540.61096/1‑94 (MQ=60)
                     GCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCAACATCCGGTGGCTTCTC                                                                          >  SRR4302540.5433043/1‑94 (MQ=60)
                      CAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCC                                                                         >  SRR4302540.9265844/1‑94 (MQ=60)
                         GTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGG                                                                      >  SRR4302540.8923405/1‑94 (MQ=60)
                         GTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGG                                                                      >  SRR4302540.848440/1‑94 (MQ=60)
                         GTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGG                                                                      <  SRR4302540.3056550/94‑1 (MQ=60)
                         GTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGG                                                                      <  SRR4302540.809821/94‑1 (MQ=60)
                         GTAATGGAAGCCACATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGG                                                                      <  SRR4302540.5151845/94‑1 (MQ=60)
                          gaATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGC                                                                     <  SRR4302540.7321586/92‑1 (MQ=60)
                          TGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGC                                                                     >  SRR4302540.1652421/1‑94 (MQ=60)
                           GATGGAAGCCGCATTTAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCT                                                                    <  SRR4302540.2297339/94‑1 (MQ=60)
                           GATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCT                                                                    >  SRR4302540.8063233/1‑94 (MQ=60)
                           GATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCT                                                                    <  SRR4302540.9013059/94‑1 (MQ=60)
                            ATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTG                                                                   <  SRR4302540.5845117/94‑1 (MQ=60)
                            ATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTG                                                                   >  SRR4302540.10160329/1‑94 (MQ=60)
                             TGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGA                                                                  >  SRR4302540.3944020/1‑94 (MQ=60)
                              GGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAA                                                                 <  SRR4302540.9363585/94‑1 (MQ=60)
                              GGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAA                                                                 >  SRR4302540.5941697/1‑94 (MQ=60)
                              GGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAA                                                                 <  SRR4302540.416856/94‑1 (MQ=60)
                               GAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAA                                                                >  SRR4302540.745863/1‑94 (MQ=60)
                               GAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAA                                                                <  SRR4302540.1771720/94‑1 (MQ=60)
                               GAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAA                                                                >  SRR4302540.7216380/1‑94 (MQ=60)
                                AAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAAT                                                               <  SRR4302540.6564183/94‑1 (MQ=60)
                                AAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAAT                                                               <  SRR4302540.9772140/94‑1 (MQ=60)
                                AAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAAT                                                               <  SRR4302540.8460168/94‑1 (MQ=60)
                                 AGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATC                                                              <  SRR4302540.4791308/94‑1 (MQ=60)
                                  GCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCGGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCA                                                             <  SRR4302540.1829429/94‑1 (MQ=60)
                                  GCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCA                                                             >  SRR4302540.6884389/1‑94 (MQ=60)
                                  GCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCA                                                             <  SRR4302540.3722847/94‑1 (MQ=60)
                                  GCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCA                                                             <  SRR4302540.5610994/94‑1 (MQ=60)
                                  GCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCA                                                             >  SRR4302540.56605/1‑94 (MQ=60)
                                   CCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCAC                                                            >  SRR4302540.2781687/1‑94 (MQ=60)
                                    CGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACT                                                           <  SRR4302540.178438/94‑1 (MQ=60)
                                    CGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACT                                                           >  SRR4302540.7514261/1‑94 (MQ=60)
                                    CGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACT                                                           <  SRR4302540.5557922/94‑1 (MQ=60)
                                     GCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTG                                                          <  SRR4302540.3850440/94‑1 (MQ=60)
                                     GCATTGAGGAGCGAACAGCATGTCGACAAGCAATCGGTCTGAAGGGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTG                                                          <  SRR4302540.4832826/94‑1 (MQ=60)
                                      CATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGA                                                         >  SRR4302540.2212339/1‑94 (MQ=60)
                                      CATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGA                                                         <  SRR4302540.6728096/94‑1 (MQ=60)
                                       ATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAA                                                        >  SRR4302540.6539993/1‑94 (MQ=60)
                                       ATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAA                                                        >  SRR4302540.9532786/1‑94 (MQ=60)
                                       ATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAA                                                        >  SRR4302540.7988188/1‑94 (MQ=60)
                                       ATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAA                                                        >  SRR4302540.1580378/1‑94 (MQ=60)
                                        TTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCAGGGGGCTTCTCCGGGCTGAAATCACTGAAT                                                       >  SRR4302540.3638610/1‑94 (MQ=60)
                                         TGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATT                                                      <  SRR4302540.6242490/94‑1 (MQ=60)
                                         TGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATT                                                      >  SRR4302540.3467485/1‑94 (MQ=60)
                                          GAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTT                                                     <  SRR4302540.8936524/94‑1 (MQ=60)
                                          GAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTT                                                     <  SRR4302540.3265086/94‑1 (MQ=60)
                                           AGGAGCGAGCATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTG                                                    <  SRR4302540.8296198/94‑1 (MQ=60)
                                           AGGAGCGAACATCATGTCGAAAAGCACTCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTG                                                    <  SRR4302540.4533313/94‑1 (MQ=60)
                                            GGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGC                                                   >  SRR4302540.9006258/1‑94 (MQ=60)
                                              AGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAG                                                 <  SRR4302540.7067429/94‑1 (MQ=60)
                                              AGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAG                                                 <  SRR4302540.716781/94‑1 (MQ=60)
                                               GCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGG                                                >  SRR4302540.1573789/1‑94 (MQ=60)
                                               GCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGG                                                <  SRR4302540.6912767/94‑1 (MQ=60)
                                               GCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGG                                                <  SRR4302540.7025653/94‑1 (MQ=60)
                                               GCGAACATCATGCCGAAAAGCAATCCGTCTGAAGTTAAAGTGGCCGCACCGACATCCGGTTGCTTCTCCGGGCTGAAATCACTGAATTTGCAGG                                                <  SRR4302540.8224869/94‑1 (MQ=60)
                                                CGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGT                                               >  SRR4302540.3788525/1‑94 (MQ=60)
                                                CGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGT                                               >  SRR4302540.3676118/1‑94 (MQ=60)
                                                 GAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTC                                              >  SRR4302540.7990104/1‑94 (MQ=60)
                                                 GAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTC                                              >  SRR4302540.6100966/1‑94 (MQ=60)
                                                 GAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTC                                              <  SRR4302540.4847164/94‑1 (MQ=60)
                                                  AACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCT                                             >  SRR4302540.3024817/1‑94 (MQ=60)
                                                   ACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGTACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTT                                            <  SRR4302540.2042512/94‑1 (MQ=60)
                                                   ACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTT                                            >  SRR4302540.619923/1‑94 (MQ=60)
                                                    CATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTC                                           >  SRR4302540.2389935/1‑94 (MQ=60)
                                                    CATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTC                                           >  SRR4302540.2085928/1‑94 (MQ=60)
                                                    CATCATGTAGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTC                                           <  SRR4302540.961298/94‑1 (MQ=60)
                                                     ATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCG                                          <  SRR4302540.6382130/94‑1 (MQ=60)
                                                     ATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCG                                          >  SRR4302540.7720336/1‑94 (MQ=60)
                                                      TCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGT                                         >  SRR4302540.854673/1‑94 (MQ=60)
                                                       CATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTG                                        >  SRR4302540.825043/1‑94 (MQ=60)
                                                       CATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTG                                        >  SRR4302540.54216/1‑94 (MQ=60)
                                                        ATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGTCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGT                                       >  SRR4302540.2907884/1‑94 (MQ=60)
                                                          GTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATG                                     >  SRR4302540.645821/1‑94 (MQ=60)
                                                          GTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATG                                     >  SRR4302540.3875936/1‑94 (MQ=60)
                                                            CGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGAT                                   <  SRR4302540.7238139/94‑1 (MQ=60)
                                                            CGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGAT                                   <  SRR4302540.2766296/94‑1 (MQ=60)
                                                            CGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGAT                                   <  SRR4302540.4549994/94‑1 (MQ=60)
                                                             GAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATT                                  <  SRR4302540.2235839/94‑1 (MQ=60)
                                                             GAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATT                                  >  SRR4302540.2039672/1‑94 (MQ=60)
                                                             GAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATT                                  <  SRR4302540.9861312/94‑1 (MQ=60)
                                                             GAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATT                                  <  SRR4302540.743025/94‑1 (MQ=60)
                                                             GAAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATT                                  >  SRR4302540.7378899/1‑94 (MQ=60)
                                                              AAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTG                                 >  SRR4302540.5583497/1‑94 (MQ=60)
                                                              AAAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTG                                 >  SRR4302540.844617/1‑94 (MQ=60)
                                                               AAAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGC                                <  SRR4302540.4200820/94‑1 (MQ=60)
                                                                AAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCA                               >  SRR4302540.4543943/1‑94 (MQ=60)
                                                                AAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCA                               >  SRR4302540.1716145/1‑94 (MQ=60)
                                                                AAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCA                               <  SRR4302540.4131122/94‑1 (MQ=60)
                                                                AAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCA                               <  SRR4302540.4131121/94‑1 (MQ=60)
                                                                AAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCA                               >  SRR4302540.3833667/1‑94 (MQ=60)
                                                                AAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCA                               <  SRR4302540.1348043/94‑1 (MQ=60)
                                                                AAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCA                               >  SRR4302540.7274735/1‑94 (MQ=60)
                                                                AAGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCA                               <  SRR4302540.1390136/94‑1 (MQ=60)
                                                                 AGCAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAG                              >  SRR4302540.9725501/1‑94 (MQ=60)
                                                                   CAATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCT                            >  SRR4302540.3460752/1‑94 (MQ=60)
                                                                    AATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTA                           >  SRR4302540.141216/1‑94 (MQ=60)
                                                                     ATCCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTAT                          <  SRR4302540.3208138/94‑1 (MQ=60)
                                                                       CCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCA                        >  SRR4302540.3832666/1‑94 (MQ=60)
                                                                       CCGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCA                        <  SRR4302540.4171840/94‑1 (MQ=60)
                                                                        CGTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCAT                       <  SRR4302540.8797804/94‑1 (MQ=60)
                                                                         GTCTGAAGTGAAATTGGCCGCGCCGACATCCGGTGGTTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATC                      <  SRR4302540.9277344/94‑1 (MQ=60)
                                                                         GTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATC                      >  SRR4302540.1162242/1‑94 (MQ=60)
                                                                         GTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATC                      >  SRR4302540.8672101/1‑94 (MQ=60)
                                                                         GTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATC                      <  SRR4302540.7877401/94‑1 (MQ=60)
                                                                         GTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATC                      <  SRR4302540.9934207/94‑1 (MQ=60)
                                                                         GTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATC                      >  SRR4302540.4780032/1‑94 (MQ=60)
                                                                         GTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATC                      <  SRR4302540.489647/94‑1 (MQ=60)
                                                                         GTCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATC                      >  SRR4302540.3973029/1‑94 (MQ=60)
                                                                         GTCTGAAGTGAAATTGGCCGCACCGACATCCGGGGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGAGTGCAGCTATCATC                      >  SRR4302540.9039770/1‑94 (MQ=60)
                                                                          TCTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCG                     <  SRR4302540.3038365/94‑1 (MQ=60)
                                                                           CTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTTCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGC                    >  SRR4302540.4646098/1‑94 (MQ=60)
                                                                           CTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGC                    >  SRR4302540.10010641/1‑94 (MQ=60)
                                                                           CTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGC                    <  SRR4302540.1889787/94‑1 (MQ=60)
                                                                           CTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGC                    <  SRR4302540.4427241/94‑1 (MQ=60)
                                                                           CTGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGC                    <  SRR4302540.1464365/94‑1 (MQ=60)
                                                                            TGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATTGCA                   >  SRR4302540.7888900/1‑94 (MQ=60)
                                                                            TGAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCA                   >  SRR4302540.3549956/1‑94 (MQ=60)
                                                                             GCAGTGAAATTGGCCGCCCCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAA                  <  SRR4302540.3131088/94‑1 (MQ=60)
                                                                             GAAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAA                  <  SRR4302540.4117880/94‑1 (MQ=60)
                                                                              AAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAAT                 <  SRR4302540.145820/94‑1 (MQ=60)
                                                                              AAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAAT                 <  SRR4302540.315879/94‑1 (MQ=60)
                                                                              AAGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAAT                 <  SRR4302540.519464/94‑1 (MQ=60)
                                                                               AGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATC                <  SRR4302540.1223601/94‑1 (MQ=60)
                                                                               AGTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATC                <  SRR4302540.5616380/94‑1 (MQ=60)
                                                                                GTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCA               <  SRR4302540.5170751/94‑1 (MQ=60)
                                                                                GTGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCA               <  SRR4302540.2437138/94‑1 (MQ=60)
                                                                                 TGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCAT              <  SRR4302540.5612778/94‑1 (MQ=60)
                                                                                 TGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCAT              <  SRR4302540.7666069/94‑1 (MQ=60)
                                                                                 TGAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCAT              <  SRR4302540.9462743/94‑1 (MQ=60)
                                                                                  GAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATG             >  SRR4302540.8474496/1‑94 (MQ=60)
                                                                                  GAAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATG             <  SRR4302540.143571/94‑1 (MQ=60)
                                                                                   AAATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGC            >  SRR4302540.2090755/1‑94 (MQ=60)
                                                                                    AATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGATATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCT           >  SRR4302540.7932425/1‑94 (MQ=60)
                                                                                    AATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCT           <  SRR4302540.833078/94‑1 (MQ=60)
                                                                                    AATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCT           >  SRR4302540.4950955/1‑94 (MQ=60)
                                                                                    AATTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCT           >  SRR4302540.1924580/1‑94 (MQ=60)
                                                                                      TTGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGT         <  SRR4302540.7188336/94‑1 (MQ=60)
                                                                                       TGGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTT        <  SRR4302540.8703776/94‑1 (MQ=60)
                                                                                        GGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGACTTTGCAGGCCTTCGTGATGATTGAAGCTATCATCGCAATCATGCTGTTC       >  SRR4302540.5800237/1‑94 (MQ=60)
                                                                                        GGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTT       >  SRR4302540.7436391/1‑94 (MQ=60)
                                                                                        GGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTC       >  SRR4302540.5800238/1‑94 (MQ=60)
                                                                                        GGCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTC       <  SRR4302540.6151204/94‑1 (MQ=60)
                                                                                         GCCGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCT      <  SRR4302540.2240834/94‑1 (MQ=60)
                                                                                           CGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCTTT    <  SRR4302540.512137/94‑1 (MQ=60)
                                                                                           CGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCTTT    >  SRR4302540.10116294/1‑94 (MQ=60)
                                                                                           CGCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCTTT    >  SRR4302540.10116293/1‑94 (MQ=60)
                                                                                            GCACCGANATCCGGTGGCTTNNCNGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCTTTA   <  SRR4302540.2357968/94‑1 (MQ=60)
                                                                                            GCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCTTTA   >  SRR4302540.136705/1‑94 (MQ=60)
                                                                                            GCACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCTTTA   <  SRR4302540.4251002/94‑1 (MQ=60)
                                                                                             CACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCTTTAC  <  SRR4302540.7605766/94‑1 (MQ=60)
                                                                                             CACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATAATCGCAATCATGCTGTTCTTTAC  >  SRR4302540.2864433/1‑94 (MQ=60)
                                                                                             |                                                                                             
AAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGTACCGACATCCGGTGGCTTCTCCGGGCTGAAATCACTGAATTTGCAGGTCTTCGTGATGATTGCAGCTATCATCGCAATCATGCTGTTCTTTAC  >  NC_000913/3731293‑3731479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑