Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,743,603 Δ1 bp coding (1171/1275 nt) yiaN → putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,743,6030C.100.0% 2942.5 / NA 641coding (1171/1275 nt)yiaNputative membrane protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (313/328);  total (313/328)

Only 100 of 649 total aligned reads displayed.

TATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGATCGATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTC  >  NC_000913/3743515‑3743690
                                                                                        |                                                                                       
tATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGc                                                                                    >  2:6030684/1‑93 (MQ=255)
 aTCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCa                                                                                   <  2:1348053/93‑1 (MQ=255)
  tCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAg                                                                                  <  2:885337/93‑1 (MQ=255)
    tttAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTc                                                                                >  2:8591332/2‑93 (MQ=255)
    aTTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTc                                                                                >  2:6315899/1‑93 (MQ=255)
     ttAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCa                                                                               >  1:4527475/1‑93 (MQ=255)
      tAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCag                                                                              <  1:2100796/93‑1 (MQ=255)
       aaCTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCaga                                                                             <  2:6743779/93‑1 (MQ=255)
        aCTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCagag                                                                            <  1:5370769/93‑1 (MQ=255)
         cTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAgg                                                                           >  1:929920/1‑93 (MQ=255)
          tGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGc                                                                          <  1:4914462/93‑1 (MQ=255)
           gCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCg                                                                         <  2:4652950/93‑1 (MQ=255)
           gCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCg                                                                         >  2:1851134/1‑93 (MQ=255)
             tCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGtt                                                                       >  2:1536744/1‑93 (MQ=255)
              cAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGttt                                                                      <  2:4004868/93‑1 (MQ=255)
              cAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGttt                                                                      <  1:5767971/93‑1 (MQ=255)
              cAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGttt                                                                      <  1:8470286/93‑1 (MQ=255)
               aaTCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGtttt                                                                     >  2:3574584/1‑93 (MQ=255)
               aaTCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGtttt                                                                     <  1:7439744/93‑1 (MQ=255)
                   ggCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCt                                                                 >  1:646684/1‑93 (MQ=255)
                    gCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCtt                                                                >  1:1713965/1‑93 (MQ=255)
                    gCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCtt                                                                <  1:637283/93‑1 (MQ=255)
                     cTTAATTACGCCGCCTATCGGTAATATACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTa                                                               <  2:45214/93‑1 (MQ=255)
                     cTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTa                                                               <  1:6966262/93‑1 (MQ=255)
                     cTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTa                                                               <  2:6884363/93‑1 (MQ=255)
                     cTTAATAACCCCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCATa                                                               <  2:8967985/93‑1 (MQ=255)
                       tAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACg                                                             >  1:424660/1‑93 (MQ=255)
                       tAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACg                                                             >  2:5935388/1‑93 (MQ=255)
                          ttACACCGCCTGTCGGTAATGTAATTAACGTTATTTCGGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTcc                                                          <  2:9266650/93‑1 (MQ=255)
                          ttACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTcc                                                          <  2:1993131/93‑1 (MQ=255)
                          ttACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTcc                                                          <  1:1142217/93‑1 (MQ=255)
                           tACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCt                                                         <  2:2576424/93‑1 (MQ=255)
                            acacCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTg                                                        >  2:5662585/1‑93 (MQ=255)
                               ccGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGtt                                                     <  2:2679744/93‑1 (MQ=255)
                               ccGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGtt                                                     <  2:3264838/93‑1 (MQ=255)
                                cGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGttt                                                    >  1:1921698/1‑93 (MQ=255)
                                cGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGttt                                                    <  1:3559679/93‑1 (MQ=255)
                                 gCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGtttt                                                   <  1:3935870/93‑1 (MQ=255)
                                  ccTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTta                                                  >  1:3031625/1‑93 (MQ=255)
                                   cTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTtat                                                 <  1:7603394/93‑1 (MQ=255)
                                    tATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTtatt                                                >  2:7591369/1‑92 (MQ=255)
                                    tATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTtata                                                >  2:5744317/1‑93 (MQ=255)
                                    tATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTtata                                                >  2:622096/1‑93 (MQ=255)
                                     aTCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTatat                                               >  2:3761878/1‑93 (MQ=255)
                                      tCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATAtt                                              <  2:4977592/93‑1 (MQ=255)
                                      tCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATAtt                                              >  1:9856679/1‑93 (MQ=255)
                                       cGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTc                                             <  1:10034749/93‑1 (MQ=255)
                                         gTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCat                                           <  2:7012946/93‑1 (MQ=255)
                                          tAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCatt                                          >  2:4910854/1‑93 (MQ=255)
                                          tAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCatt                                          <  1:8147064/93‑1 (MQ=255)
                                            aTGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCTGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCattat                                        >  1:6717144/1‑93 (MQ=255)
                                            aTGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGCGGCGTTTTCCCTTACGTCCTGGTTTTATATTCattat                                        >  2:8704929/1‑93 (MQ=255)
                                            aTGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCattat                                        >  2:2179676/1‑93 (MQ=255)
                                            aTGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCattat                                        >  1:1187824/1‑93 (MQ=255)
                                            aTGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCattat                                        >  1:52417/1‑93 (MQ=255)
                                            aTGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCattat                                        <  1:4077208/93‑1 (MQ=255)
                                             tGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCattatt                                       <  2:5113234/93‑1 (MQ=255)
                                              gTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCAttatta                                      <  2:4336256/93‑1 (MQ=255)
                                              gTACTTAACGTTATTTCAGGGGGTGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCAttatta                                      <  2:7221682/93‑1 (MQ=255)
                                                 cTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTc                                   >  2:9083654/1‑93 (MQ=255)
                                                  ttAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCg                                  >  2:2857637/1‑93 (MQ=255)
                                                  ttAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCg                                  <  1:1389104/93‑1 (MQ=255)
                                                  ttAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCg                                  >  2:10000814/1‑93 (MQ=255)
                                                   tAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGt                                 >  2:8335830/1‑93 (MQ=255)
                                                     aCGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTAt                               <  2:7352574/93‑1 (MQ=255)
                                                     aCGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTAt                               <  2:4175158/93‑1 (MQ=255)
                                                      cGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTAtt                              >  1:7331285/1‑93 (MQ=255)
                                                      cGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTAtt                              >  1:2643180/1‑93 (MQ=255)
                                                        ttATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTg                            <  2:2265017/93‑1 (MQ=255)
                                                          aTTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGtt                          >  1:3235166/1‑93 (MQ=255)
                                                           tttCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGttt                         >  1:5559783/1‑93 (MQ=255)
                                                           tttCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGttt                         <  2:525772/93‑1 (MQ=255)
                                                           tttCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGttt                         <  1:9045318/93‑1 (MQ=255)
                                                           tttCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGttt                         >  1:2904785/1‑93 (MQ=255)
                                                           tttCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATGCATTATTAGTCGTATTTGttt                         <  1:2204515/93‑1 (MQ=255)
                                                           ttacAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTGCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGttt                         <  1:3789462/90‑1 (MQ=255)
                                                            ttCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGtttt                        <  1:7824547/93‑1 (MQ=255)
                                                              cAGGGGTGGCAAAACTCAAATTCGAT‑GATACAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTa                      <  2:4820645/93‑1 (MQ=255)
                                                                ggggTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTAtt                    >  2:2939836/1‑93 (MQ=255)
                                                                ggggTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTAtt                    <  2:6514344/93‑1 (MQ=255)
                                                                ggggTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTAtt                    <  1:9718580/93‑1 (MQ=255)
                                                                    tGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCg                >  2:9593797/1‑93 (MQ=255)
                                                                    tGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCg                >  1:5910683/1‑93 (MQ=255)
                                                                     ggCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGa               <  2:6623661/93‑1 (MQ=255)
                                                                       cAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGAtc             <  2:7984883/93‑1 (MQ=255)
                                                                       cAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGAtc             <  1:9587383/93‑1 (MQ=255)
                                                                        aaaaCTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGAtct            <  2:3390270/93‑1 (MQ=255)
                                                                         aaaCTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGAtctc           >  1:2467076/1‑93 (MQ=255)
                                                                         aaaCTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGAtctc           >  1:4727074/1‑93 (MQ=255)
                                                                          aaCTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCtca          >  2:114867/1‑93 (MQ=255)
                                                                           aCTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCtcat         >  2:9825181/1‑93 (MQ=255)
                                                                             tCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCtcatca       <  1:8817478/93‑1 (MQ=255)
                                                                              cAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTcatcat      <  2:8157343/93‑1 (MQ=255)
                                                                               aaaTTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCatcatc     <  1:7183486/93‑1 (MQ=255)
                                                                                aaTTCGAT‑GATGTAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCAtcc    <  1:6108451/93‑1 (MQ=255)
                                                                                aaTTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCAtcc    <  2:7714477/93‑1 (MQ=255)
                                                                                aaTTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCAtcc    >  2:7478846/1‑93 (MQ=255)
                                                                                aaTTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCAtcc    <  2:9375466/93‑1 (MQ=255)
                                                                                 aTTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCAtcct   <  1:1450799/93‑1 (MQ=255)
                                                                                 aTTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCAtcct   <  2:2425364/93‑1 (MQ=255)
                                                                                        |                                                                                       
TATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGATCGATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTC  >  NC_000913/3743515‑3743690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 333 total aligned reads displayed.
ATGTTTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGATCGATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTCCCTTTG  >  NC_000913/3743510‑3743696
                                                                                             |                                                                                             
ATGTTTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGATG                                                                                               >  SRR4302540.8868129/1‑94 (MQ=60)
ATGTTTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGATG                                                                                               <  SRR4302540.672649/94‑1 (MQ=60)
ATGTTTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGATG                                                                                               >  SRR4302540.9764243/1‑94 (MQ=60)
  GTTTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GAT                                                                                            >  SRR4302540.8691965/1‑94 (MQ=60)
  GTTTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GAT                                                                                            <  SRR4302540.303269/94‑1 (MQ=60)
  GTTTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GAT                                                                                            <  SRR4302540.9871572/94‑1 (MQ=60)
  GTTTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GAT                                                                                            <  SRR4302540.5728052/94‑1 (MQ=60)
  GTTTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GAT                                                                                            <  SRR4302540.9153229/94‑1 (MQ=60)
  GTTTATCATTAACTGCTCAATCGGCTTAATTACAACGCCTATAGGTAATGTACTTAACGTTATTTAAGGGGTGGCAAAACTAAAATTCGAT‑GAT                                                                                            <  SRR4302540.9024430/94‑1 (MQ=60)
   TTTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATG                                                                                           >  SRR4302540.1919727/1‑94 (MQ=60)
   TTTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATG                                                                                           >  SRR4302540.7674496/1‑94 (MQ=60)
    TTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGC                                                                                          <  SRR4302540.8479688/94‑1 (MQ=60)
    TTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGC                                                                                          >  SRR4302540.379915/1‑94 (MQ=60)
    TTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGC                                                                                          >  SRR4302540.1464881/1‑94 (MQ=60)
     TATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCA                                                                                         <  SRR4302540.5606595/94‑1 (MQ=60)
     TATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCA                                                                                         <  SRR4302540.2029757/94‑1 (MQ=60)
     TATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCA                                                                                         <  SRR4302540.7352980/94‑1 (MQ=60)
     TATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCA                                                                                         <  SRR4302540.4727775/94‑1 (MQ=60)
      ATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAG                                                                                        <  SRR4302540.8203106/94‑1 (MQ=60)
      ATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAG                                                                                        <  SRR4302540.9722148/94‑1 (MQ=60)
        CATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTC                                                                                      >  SRR4302540.9936404/1‑94 (MQ=60)
        CATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGCGGCAAAACTCAAATTCGAT‑GATGCAGTC                                                                                      <  SRR4302540.1146298/94‑1 (MQ=60)
         ATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCA                                                                                     >  SRR4302540.4576495/1‑94 (MQ=60)
          TTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAG                                                                                    <  SRR4302540.8324344/94‑1 (MQ=60)
          TTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAG                                                                                    >  SRR4302540.2266366/1‑94 (MQ=60)
           ttatTGCTCAATCTGCTTAAATACACCTCTTCTCGGTAATGTACTTAACCTTATTTCAGTTGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGA                                                                                   <  SRR4302540.1380003/90‑1 (MQ=41)
           TAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGA                                                                                   <  SRR4302540.2123349/94‑1 (MQ=60)
            AACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAG                                                                                  <  SRR4302540.8030080/94‑1 (MQ=60)
            AACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAG                                                                                  <  SRR4302540.1683114/94‑1 (MQ=60)
            AACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTAAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAG                                                                                  <  SRR4302540.3184501/94‑1 (MQ=60)
             ACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGG                                                                                 <  SRR4302540.3875173/94‑1 (MQ=60)
             ACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGG                                                                                 <  SRR4302540.5429800/94‑1 (MQ=60)
             ACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGG                                                                                 <  SRR4302540.6264990/94‑1 (MQ=60)
             ACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGG                                                                                 >  SRR4302540.1712114/1‑94 (MQ=60)
             ACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGG                                                                                 >  SRR4302540.939702/1‑94 (MQ=60)
              CTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGC                                                                                <  SRR4302540.7550263/94‑1 (MQ=60)
              CTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGC                                                                                <  SRR4302540.5076126/94‑1 (MQ=60)
              CTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGC                                                                                <  SRR4302540.3769245/94‑1 (MQ=60)
              CTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGGTATTTCACGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGACGC                                                                                >  SRR4302540.3433980/1‑94 (MQ=60)
               TGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCG                                                                               >  SRR4302540.1956529/1‑94 (MQ=60)
                GCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGT                                                                              >  SRR4302540.2207865/1‑94 (MQ=60)
                 CTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTT                                                                             >  SRR4302540.4465983/1‑94 (MQ=60)
                 CTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTT                                                                             >  SRR4302540.5723215/1‑94 (MQ=60)
                 CTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTT                                                                             >  SRR4302540.8971689/1‑94 (MQ=60)
                  TCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTT                                                                            <  SRR4302540.6524489/94‑1 (MQ=60)
                  TCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTT                                                                            <  SRR4302540.7887142/94‑1 (MQ=60)
                  TCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAAGTCGAT‑GATGCAGTCAGAGGCGTTT                                                                            <  SRR4302540.7887143/94‑1 (MQ=60)
                  TCAATCGACTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTT                                                                            >  SRR4302540.362613/1‑94 (MQ=60)
                   CAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTT                                                                           >  SRR4302540.6906469/1‑94 (MQ=60)
                   CAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTT                                                                           <  SRR4302540.8568648/94‑1 (MQ=60)
                    AATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTC                                                                          <  SRR4302540.7522643/94‑1 (MQ=60)
                    AATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTC                                                                          >  SRR4302540.2727821/1‑94 (MQ=60)
                     ATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCC                                                                         >  SRR4302540.6514715/1‑94 (MQ=60)
                     ATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCC                                                                         >  SRR4302540.2989975/1‑94 (MQ=60)
                      TCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCC                                                                        <  SRR4302540.9549611/94‑1 (MQ=60)
                      TCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCC                                                                        >  SRR4302540.882073/1‑94 (MQ=60)
                      TCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCC                                                                        <  SRR4302540.7628937/94‑1 (MQ=60)
                       CGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCT                                                                       >  SRR4302540.653572/1‑94 (MQ=60)
                       CGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCT                                                                       <  SRR4302540.1177365/94‑1 (MQ=60)
                       CGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCT                                                                       <  SRR4302540.154833/94‑1 (MQ=60)
                        GGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTT                                                                      <  SRR4302540.6134842/94‑1 (MQ=60)
                        GGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTT                                                                      >  SRR4302540.7378296/1‑94 (MQ=60)
                         GCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTA                                                                     <  SRR4302540.644060/94‑1 (MQ=60)
                         GCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTA                                                                     <  SRR4302540.4261960/94‑1 (MQ=60)
                         GCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTA                                                                     <  SRR4302540.8080827/94‑1 (MQ=60)
                          CTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTAC                                                                    >  SRR4302540.9901000/1‑94 (MQ=60)
                          CTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTAC                                                                    <  SRR4302540.7043720/94‑1 (MQ=60)
                          CTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTAC                                                                    <  SRR4302540.7459364/94‑1 (MQ=60)
                           TTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACG                                                                   >  SRR4302540.9731495/1‑94 (MQ=60)
                           TTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTACCTTACG                                                                   >  SRR4302540.429129/1‑94 (MQ=60)
                             AATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTC                                                                 >  SRR4302540.7423408/1‑94 (MQ=60)
                               TTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCT                                                               >  SRR4302540.7669684/1‑94 (MQ=60)
                               TTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCT                                                               <  SRR4302540.752865/94‑1 (MQ=60)
                               ATACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCT                                                               <  SRR4302540.2815662/94‑1 (MQ=60)
                                TACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTG                                                              <  SRR4302540.1384270/94‑1 (MQ=60)
                                TACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTG                                                              >  SRR4302540.2277264/1‑94 (MQ=60)
                                TACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTG                                                              >  SRR4302540.9154896/1‑94 (MQ=60)
                                 ACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGG                                                             <  SRR4302540.3961228/94‑1 (MQ=60)
                                 ACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGGTTTCCCTTACGTCCTGG                                                             <  SRR4302540.9346612/94‑1 (MQ=60)
                                  CACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGT                                                            <  SRR4302540.7389775/94‑1 (MQ=60)
                                  CACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGT                                                            <  SRR4302540.4588924/94‑1 (MQ=60)
                                  CACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGT                                                            <  SRR4302540.6675285/94‑1 (MQ=60)
                                   NCCGCCTNTCGGTAATGTACTNAACGTTATTTCAGGTGTGGCAAACCTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTT                                                           <  SRR4302540.8039459/94‑1 (MQ=60)
                                   ACCGCCTATCGGTAATGTACTTAACGATATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTT                                                           >  SRR4302540.6971755/1‑94 (MQ=60)
                                    CCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTT                                                          <  SRR4302540.5635625/94‑1 (MQ=60)
                                    CCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTT                                                          <  SRR4302540.4063896/94‑1 (MQ=60)
                                    CCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTT                                                          >  SRR4302540.1942654/1‑94 (MQ=60)
                                    CCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTT                                                          <  SRR4302540.2191055/94‑1 (MQ=60)
                                     CGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTT                                                         <  SRR4302540.3598565/94‑1 (MQ=60)
                                     CGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTT                                                         >  SRR4302540.1061697/1‑94 (MQ=60)
                                     CGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTT                                                         >  SRR4302540.4857702/1‑94 (MQ=60)
                                      GCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTA                                                        >  SRR4302540.10013620/1‑94 (MQ=60)
                                      GCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTA                                                        >  SRR4302540.10013619/1‑94 (MQ=60)
                                      GCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTA                                                        >  SRR4302540.3980574/1‑94 (MQ=60)
                                      GCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTA                                                        <  SRR4302540.2227836/94‑1 (MQ=60)
                                      GCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTA                                                        >  SRR4302540.3064910/1‑94 (MQ=60)
                                      GCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTA                                                        >  SRR4302540.6729090/1‑94 (MQ=60)
                                       CCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTAT                                                       >  SRR4302540.2017881/1‑94 (MQ=60)
                                       CCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTAT                                                       <  SRR4302540.5836303/94‑1 (MQ=60)
                                       CCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCATACGTCCTGGTTTTAT                                                       >  SRR4302540.9742912/1‑94 (MQ=60)
                                        CTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATT                                                      >  SRR4302540.2494294/1‑94 (MQ=60)
                                        CTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATA                                                      >  SRR4302540.2919175/1‑94 (MQ=60)
                                        CTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATA                                                      >  SRR4302540.7208029/1‑94 (MQ=60)
                                        CTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATA                                                      <  SRR4302540.1747413/94‑1 (MQ=60)
                                        CTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATA                                                      <  SRR4302540.547117/94‑1 (MQ=60)
                                        CTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGGTTTCCCTTACGTCCTGGTTTTATA                                                      >  SRR4302540.9045084/1‑94 (MQ=60)
                                         TATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATAT                                                     >  SRR4302540.4757241/1‑94 (MQ=60)
                                          ATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATT                                                    >  SRR4302540.9971903/1‑94 (MQ=60)
                                           TCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTC                                                   <  SRR4302540.8973480/94‑1 (MQ=60)
                                           TCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTC                                                   >  SRR4302540.5993240/1‑94 (MQ=60)
                                            CGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCA                                                  <  SRR4302540.10151458/94‑1 (MQ=60)
                                            CGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCA                                                  <  SRR4302540.9043976/94‑1 (MQ=60)
                                             GGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCAT                                                 <  SRR4302540.6014224/94‑1 (MQ=60)
                                             GGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCAT                                                 <  SRR4302540.6040734/94‑1 (MQ=60)
                                              GTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATT                                                <  SRR4302540.9162295/94‑1 (MQ=60)
                                               TAATGTACTTAACTTTATTTCAGGGGTGGCATAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTA                                               <  SRR4302540.8298679/94‑1 (MQ=60)
                                               TAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTA                                               >  SRR4302540.3180129/1‑94 (MQ=60)
                                               TAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTA                                               >  SRR4302540.5879742/1‑94 (MQ=60)
                                               TAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTA                                               <  SRR4302540.8241641/94‑1 (MQ=60)
                                                AATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCTGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTAT                                              >  SRR4302540.6791250/1‑94 (MQ=60)
                                                AATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTAT                                              >  SRR4302540.52940/1‑94 (MQ=60)
                                                AATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTAT                                              >  SRR4302540.8850350/1‑94 (MQ=60)
                                                AATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTAT                                              <  SRR4302540.10103454/94‑1 (MQ=60)
                                                AATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTAA                                              <  SRR4302540.3870307/94‑1 (MQ=60)
                                                 ATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATT                                             <  SRR4302540.4020888/94‑1 (MQ=60)
                                                 ATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATT                                             <  SRR4302540.4121161/94‑1 (MQ=60)
                                                 ATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATT                                             >  SRR4302540.418837/1‑94 (MQ=60)
                                                 ATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATT                                             >  SRR4302540.2991620/1‑94 (MQ=60)
                                                 ATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATT                                             >  SRR4302540.5670548/1‑94 (MQ=60)
                                                 ATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATT                                             <  SRR4302540.9453443/94‑1 (MQ=60)
                                                  TGTACTTAACGTTATTTCAGGTGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTA                                            <  SRR4302540.5125454/94‑1 (MQ=60)
                                                  TGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTA                                            >  SRR4302540.1195777/1‑94 (MQ=60)
                                                   GTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCTTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAG                                           <  SRR4302540.1156489/94‑1 (MQ=60)
                                                   GTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAG                                           >  SRR4302540.5422498/1‑94 (MQ=60)
                                                   GTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAG                                           <  SRR4302540.2452339/94‑1 (MQ=60)
                                                   GTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAG                                           <  SRR4302540.6530747/94‑1 (MQ=60)
                                                    TACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCCGTCAGAGGCGTTTTCCCTTACGTCCTGGTGTTATATTCATTATTAGT                                          >  SRR4302540.5349626/1‑94 (MQ=60)
                                                     ACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTC                                         >  SRR4302540.4813753/1‑94 (MQ=60)
                                                     ACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTC                                         >  SRR4302540.1904601/1‑94 (MQ=60)
                                                      CTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCG                                        >  SRR4302540.9929489/1‑94 (MQ=60)
                                                       TTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGT                                       <  SRR4302540.1403969/94‑1 (MQ=60)
                                                        TAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTA                                      >  SRR4302540.4985044/1‑94 (MQ=60)
                                                        TAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTA                                      >  SRR4302540.6563494/1‑94 (MQ=60)
                                                        TAACGTTATGTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTA                                      <  SRR4302540.4305261/94‑1 (MQ=60)
                                                         AACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTAT                                     >  SRR4302540.1408901/1‑94 (MQ=60)
                                                         AACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTAT                                     <  SRR4302540.4869535/94‑1 (MQ=60)
                                                         AACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTAT                                     <  SRR4302540.9374390/94‑1 (MQ=60)
                                                         AACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTAT                                     >  SRR4302540.4796639/1‑94 (MQ=60)
                                                          ACGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATT                                    >  SRR4302540.2671852/1‑94 (MQ=60)
                                                           CGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTT                                   <  SRR4302540.134586/94‑1 (MQ=60)
                                                           CGTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTT                                   <  SRR4302540.5385190/94‑1 (MQ=60)
                                                            GTTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTG                                  <  SRR4302540.2437703/94‑1 (MQ=60)
                                                             TTATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGT                                 <  SRR4302540.3661997/94‑1 (MQ=60)
                                                              TATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTT                                >  SRR4302540.3270349/1‑94 (MQ=60)
                                                               ATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTT                               <  SRR4302540.8396762/94‑1 (MQ=60)
                                                               ATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTT                               >  SRR4302540.6953706/1‑94 (MQ=60)
                                                               ATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTT                               <  SRR4302540.8664683/94‑1 (MQ=60)
                                                               ATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTT                               <  SRR4302540.1183207/94‑1 (MQ=60)
                                                               ATTTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTT                               >  SRR4302540.2936493/1‑94 (MQ=60)
                                                                 TTCATGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTT                             <  SRR4302540.5950974/94‑1 (MQ=60)
                                                                 TTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTT                             <  SRR4302540.7915984/94‑1 (MQ=60)
                                                                 TTCAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTT                             <  SRR4302540.4117137/94‑1 (MQ=60)
                                                                 TTCAGGGGGGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTACTGGTTTTATATTCATTATTATTCGTTTTTTTTTTT                             >  SRR4302540.2916659/1‑94 (MQ=60)
                                                                   CAGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTAT                           <  SRR4302540.7417439/94‑1 (MQ=60)
                                                                    AGGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATT                          <  SRR4302540.3460530/94‑1 (MQ=60)
                                                                     GGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTC                         <  SRR4302540.9832762/94‑1 (MQ=60)
                                                                     GGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTC                         <  SRR4302540.2004103/94‑1 (MQ=60)
                                                                     GGGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTC                         <  SRR4302540.7269134/94‑1 (MQ=60)
                                                                      GGGTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCC                        <  SRR4302540.2415044/94‑1 (MQ=60)
                                                                        GTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCG                      >  SRR4302540.5975981/1‑94 (MQ=60)
                                                                        GTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCG                      >  SRR4302540.10161248/1‑94 (MQ=60)
                                                                        GTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCG                      <  SRR4302540.4411323/94‑1 (MQ=60)
                                                                        GTGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCG                      >  SRR4302540.5003603/1‑94 (MQ=60)
                                                                         TGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGA                     <  SRR4302540.4491627/94‑1 (MQ=60)
                                                                         GGGCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGA                     <  SRR4302540.3446805/94‑1 (MQ=60)
                                                                           GCAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTCTTTGTTTTTATTCCCGATC                   >  SRR4302540.3134260/1‑94 (MQ=60)
                                                                            CAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCT                  >  SRR4302540.7117679/1‑94 (MQ=60)
                                                                            CAAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCT                  >  SRR4302540.1469006/1‑94 (MQ=60)
                                                                             AAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCCTTATTAGTCGTATTTGTTTTTATTACCGATCTC                 >  SRR4302540.1830643/1‑94 (MQ=60)
                                                                             AAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTC                 >  SRR4302540.4777560/1‑94 (MQ=60)
                                                                             AAAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTC                 >  SRR4302540.1486480/1‑94 (MQ=60)
                                                                              AAACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCA                <  SRR4302540.7186641/94‑1 (MQ=60)
                                                                               AACTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCAT               >  SRR4302540.5501383/1‑94 (MQ=60)
                                                                                 CTCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCA             <  SRR4302540.7699630/94‑1 (MQ=60)
                                                                                  TCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTTCGTCCTGGTTTTATATTCATTATTAGTCGTATTTTTTTTTATTCCCGATCTCATCAT            <  SRR4302540.2598581/94‑1 (MQ=60)
                                                                                  TCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCAT            <  SRR4302540.5750005/94‑1 (MQ=60)
                                                                                  TCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCAT            <  SRR4302540.2598576/94‑1 (MQ=60)
                                                                                  TCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCAT            >  SRR4302540.6264469/1‑94 (MQ=60)
                                                                                  TCAAATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCAT            >  SRR4302540.3851559/1‑94 (MQ=60)
                                                                                     AATTCGAT‑GATGTAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCT         <  SRR4302540.6176480/94‑1 (MQ=60)
                                                                                     AATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCT         >  SRR4302540.1422154/1‑94 (MQ=60)
                                                                                      ATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTC        <  SRR4302540.9565345/94‑1 (MQ=60)
                                                                                      ATTCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTC        >  SRR4302540.7410092/1‑94 (MQ=60)
                                                                                        TCGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTCCC      >  SRR4302540.6232485/1‑94 (MQ=60)
                                                                                         CGAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTCCCT     >  SRR4302540.1210604/1‑94 (MQ=60)
                                                                                          GAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTCCCTT    <  SRR4302540.2729437/94‑1 (MQ=60)
                                                                                          GAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTCCCTT    >  SRR4302540.1227887/1‑94 (MQ=60)
                                                                                          GAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTCCCTT    <  SRR4302540.3062357/94‑1 (MQ=60)
                                                                                          GAT‑GATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTCCCTT    <  SRR4302540.7331037/94‑1 (MQ=60)
                                                                                             TGATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTCCCTTTG  >  SRR4302540.6992086/1‑94 (MQ=60)
                                                                                             |                                                                                             
ATGTTTATCATTAACTGCTCAATCGGCTTAATTACACCGCCTATCGGTAATGTACTTAACGTTATTTCAGGGGTGGCAAAACTCAAATTCGATCGATGCAGTCAGAGGCGTTTTCCCTTACGTCCTGGTTTTATATTCATTATTAGTCGTATTTGTTTTTATTCCCGATCTCATCATCCTCCCTTTG  >  NC_000913/3743510‑3743696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑