Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,778,658 |
(C)5→4 |
intergenic (+14/‑184) |
lldD → / → yibK |
L‑lactate dehydrogenase/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,778,654 | 0 | C | . | 96.4%
| 680.3
/ 15.9
| 167 | intergenic (+10/‑188) | lldD/yibK | L‑lactate dehydrogenase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (6/0); new base . (6/153); total (13/154) |
| Fisher's exact test for biased strand distribution p-value = 3.61e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 |
Only 100 of 205 total aligned reads displayed.
TTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTT > NC_000913/3778562‑3778745
|
tACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcc > 2:6200590/1‑93 (MQ=255)
agCATGATTGGCTGGTCATGGGGCTGGGTAAAGTGTTGGCTGCGGCAGTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccc < 1:6823894/92‑1 (MQ=255)
gCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcgccc > 2:4232858/1‑93 (MQ=255)
cAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccctc < 1:5174157/93‑3 (MQ=255)
cAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGccccgc > 2:4879517/1‑91 (MQ=255)
cAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccccc > 1:2389978/1‑92 (MQ=255)
aaGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGccccccc > 2:7593661/1‑91 (MQ=255)
gATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCAcc < 1:7654175/93‑1 (MQ=255)
ttCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCcccccccccc > 2:8345672/1‑93 (MQ=255)
cGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCcccccccccccc > 1:545043/1‑91 (MQ=255)
gCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGGccccccccccccc > 1:5655153/1‑90 (MQ=255)
cTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGGccccccccccccac > 1:896369/1‑89 (MQ=255)
cTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAAcc < 2:32054/93‑1 (MQ=255)
cTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAAcc < 2:639340/93‑1 (MQ=255)
tGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAAccc < 1:6830852/93‑1 (MQ=255)
tGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAAccc < 1:408764/93‑1 (MQ=255)
tGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAAccc < 1:2851245/93‑1 (MQ=255)
ggTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCct < 1:978972/93‑1 (MQ=255)
ggTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCct < 2:5351942/93‑1 (MQ=255)
gTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAAacccc > 1:1706251/1‑91 (MQ=255)
gTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCctc < 2:5452370/93‑1 (MQ=255)
gCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCtctc < 1:8034700/93‑1 (MQ=255)
gCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCtctc < 2:6973829/93‑1 (MQ=255)
gCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCtctc < 2:65654/93‑1 (MQ=255)
aGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTccc < 1:2143053/93‑1 (MQ=255)
aGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTccc < 1:7945277/93‑1 (MQ=255)
aGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTccc < 1:9991056/93‑1 (MQ=255)
ggggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCC‑CCCCCCCACCCCCTcccc > 1:2974168/1‑92 (MQ=255)
ggggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCATCCTAACCCTCTcccc > 1:13229/1‑92 (MQ=255)
ggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCAAACCC‑CTcccccc > 1:8779779/1‑90 (MQ=255)
ggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCa < 1:3226409/93‑1 (MQ=255)
ggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCa < 2:9554903/93‑1 (MQ=255)
gCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTACCCCTCTCCCTCAg < 1:2084543/93‑1 (MQ=255)
gtGGGTAAAGAGTTGCCTGCGGTACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAgg < 1:3105669/92‑1 (MQ=255)
cTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAgg < 2:9790412/93‑1 (MQ=255)
tGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCCCACCCcctccctccccc > 1:245178/1‑89 (MQ=255)
tGGGTAAAGAGTTGCATGCGGCACTAGAACCCATGACGAAAGGAAATGCGACATAGTCGATAGC‑ACCACTCACCCTAACCCACTCCCTCAggg < 2:9207198/93‑1 (MQ=255)
gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGga < 2:5647791/93‑1 (MQ=255)
gTAAAGAGTTGCCTGCGGGACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCCCCCTAACCCTCTCCCTCAGGgaga < 2:7573275/93‑1 (MQ=255)
gTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGgaga < 1:1295749/93‑1 (MQ=255)
aaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAGGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTACCCCTCTCCCTCAGGGAGAggg < 2:4017378/93‑1 (MQ=255)
agagTTGCCTGCGGCACTGGCTCCCAGGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCCCCCTAACCCTCTCCCTCAGGGAGAgggg < 1:7144091/93‑1 (MQ=39)
gagTTACCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTGGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGa < 2:8172223/93‑1 (MQ=38)
agTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAc < 1:5649429/93‑1 (MQ=255)
gTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAcc < 2:4401722/93‑1 (MQ=255)
ttGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCg < 1:6471215/93‑1 (MQ=255)
gCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGtt < 1:9793811/93‑1 (MQ=255)
ccTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTc < 2:2324952/93‑1 (MQ=255)
cgCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCGCAGGGAGAGGGGACCGTTCgg < 1:8239182/92‑1 (MQ=255)
gCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc < 2:7861797/93‑1 (MQ=255)
ggCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcgc < 1:1048268/93‑1 (MQ=255)
cACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtg < 1:7347648/93‑1 (MQ=255)
cTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgta < 1:2019925/93‑1 (MQ=255)
cTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgta < 2:752014/93‑1 (MQ=255)
cTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgta < 1:4392442/93‑1 (MQ=255)
cTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgta < 1:5343765/93‑1 (MQ=255)
cTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgta < 2:4471912/93‑1 (MQ=255)
ggCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatg < 1:6688538/93‑1 (MQ=255)
gCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatgt < 1:1999051/93‑1 (MQ=255)
gCTCCCATGCCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatgt < 1:7161301/93‑1 (MQ=255)
cTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTACCCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatgta < 1:7468934/93‑1 (MQ=255)
cTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatgta < 1:6995697/93‑1 (MQ=255)
tCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCC‑CCCCCCCACCCTCTCCCCCCCGGGGAGGGGGCCGGTTGGGGCggtgtgtta > 2:1626306/1‑91 (MQ=255)
tCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTAc < 2:9962110/93‑1 (MQ=255)
ccATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTtctc < 2:8456301/93‑1 (MQ=255)
cATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTcc < 2:870701/93‑1 (MQ=255)
aTGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTccc < 2:2735544/93‑1 (MQ=255)
aTGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTccc < 1:2339406/93‑1 (MQ=255)
aTGGCGAAAGGGAATACAGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTATATGAACTcca < 2:8985444/93‑2 (MQ=37)
tGGCGAAAGGGAATGCGTCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCt < 2:6424674/93‑1 (MQ=255)
tGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCt < 1:6290788/93‑1 (MQ=255)
tGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCCAACCCTCTCCCCCAAGGGGGGGGGGCCGGTCCGCGCGGTGTGTTCTcccc > 2:1569269/1‑92 (MQ=19)
gAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAct < 1:4906364/93‑1 (MQ=255)
aaaGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCActc < 2:9448678/93‑1 (MQ=255)
aaaGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCActc < 1:8539323/93‑1 (MQ=255)
gggAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTATTCCCTCACTCTGa < 1:6407614/93‑1 (MQ=255)
gggAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCACCCTCCGGGAGAGGGGGGCGGTCGGCGCTGTATGTTCTCCCTCCCTCTGa > 2:6332229/1‑93 (MQ=255)
gAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa < 2:3265898/93‑1 (MQ=255)
gAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa < 2:7456019/93‑1 (MQ=255)
gAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa < 1:8397496/93‑1 (MQ=255)
gAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa < 2:51156/93‑1 (MQ=255)
aaTGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAc < 1:7570311/93‑1 (MQ=255)
aaTGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTATGAAAc < 1:3703430/93‑1 (MQ=255)
tGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGa < 2:2495325/93‑1 (MQ=255)
gCGTCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGac < 2:9683096/93‑1 (MQ=255)
gCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGac < 2:7396610/93‑1 (MQ=255)
gCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGac < 2:1176646/93‑1 (MQ=255)
gCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGac < 2:1665999/93‑1 (MQ=255)
gCGGCATAGTAGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGac < 2:2052505/93‑1 (MQ=255)
ggCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGacac < 2:3857254/93‑1 (MQ=255)
gCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACAcc < 1:9469627/93‑1 (MQ=255)
gCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACAcc < 1:8117188/93‑1 (MQ=255)
aTAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGc < 1:328090/93‑1 (MQ=255)
tAGTCGTTTGCGCCCCC‑CACCCCAACCCTCTCCCTCCCGGGGAGGGGGCCGGTCGGCGCCGTATGTACTCCCTCACTCTGCAACGACAccccc > 2:1768026/1‑90 (MQ=255)
tAGTCGTTTGCG‑CCCCTCACCCTAGCCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATATACTCCCTCACTCTGAAACGACACCGCa < 2:9237380/93‑1 (MQ=38)
tAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCa < 2:2175823/93‑1 (MQ=255)
tAGTCGTTTGCG‑CACCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCgac > 1:362164/1‑91 (MQ=38)
aGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAc < 1:8638426/93‑1 (MQ=255)
cGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCActct < 1:4833905/93‑1 (MQ=255)
cGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCActct < 1:9338140/93‑1 (MQ=255)
|
TTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTT > NC_000913/3778562‑3778745
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT > NC_000913/3778565‑3778751
|
agcatgattggctggtcatGGGGCTGGGTAAAGTGTTGGCTGCGGCAGTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCT < SRR4302540.6899436/75‑1 (MQ=60)
CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCT < SRR4302540.6899437/94‑1 (MQ=60)
GCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCGCCC > SRR4302540.2403215/1‑94 (MQ=60)
GCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCC > SRR4302540.2415739/1‑94 (MQ=60)
CAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCA < SRR4302540.5230472/94‑1 (MQ=60)
CAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCA < SRR4302540.3048912/94‑1 (MQ=60)
CAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCA < SRR4302540.4253403/94‑1 (MQ=60)
GATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCC < SRR4302540.7740346/94‑1 (MQ=60)
GATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCC < SRR4302540.1331086/94‑1 (MQ=60)
AATTCGCTGGTGCAGGGGCTTGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCTGCATAGTCGTTTGCG‑C‑CCCTCACCC < SRR4302540.7740345/94‑1 (MQ=60)
TCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccc > SRR4302540.550973/1‑86 (MQ=60)
GCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACC < SRR4302540.6485560/94‑1 (MQ=60)
TGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCT < SRR4302540.2882134/94‑1 (MQ=60)
TGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCT < SRR4302540.4898017/94‑1 (MQ=60)
TGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCT < SRR4302540.6906488/94‑1 (MQ=60)
TGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCT < SRR4302540.413042/94‑1 (MQ=60)
GGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAAacccc > SRR4302540.1724694/1‑89 (MQ=60)
GGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTC < SRR4302540.989006/94‑1 (MQ=60)
GTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCccccccacaccccc > SRR4302540.9675670/1‑80 (MQ=60)
TGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTC < SRR4302540.9117767/94‑1 (MQ=60)
GCGGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCC < SRR4302540.2918473/94‑1 (MQ=60)
GCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCC < SRR4302540.8128093/94‑1 (MQ=60)
AGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccaccccctcccc > SRR4302540.3007046/1‑76 (MQ=60)
AGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCATCCTAACCCTCTCCCC > SRR4302540.13374/1‑94 (MQ=60)
AGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCT < SRR4302540.8037888/94‑1 (MQ=60)
AGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCT < SRR4302540.10107500/94‑1 (MQ=60)
AGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCT < SRR4302540.6634914/94‑1 (MQ=60)
AGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCT < SRR4302540.8037889/94‑1 (MQ=60)
AGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCT < SRR4302540.2166083/94‑1 (MQ=60)
AGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGCTTGCGCC‑CCCcacccccaacccctcccc > SRR4302540.5220300/1‑76 (MQ=60)
GGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCccccccaaacccctcccccc > SRR4302540.8881436/1‑74 (MQ=60)
GGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCccccccccccacccccccccc > SRR4302540.6427356/1‑73 (MQ=60)
GGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAG < SRR4302540.3261484/94‑1 (MQ=60)
GCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTACCCCTCTCCCTCAGG < SRR4302540.2106936/94‑1 (MQ=60)
GTGGGTAAAGAGTTGCCTGCGGTACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGG < SRR4302540.3139666/94‑1 (MQ=60)
CTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccaccccccccccccccc > SRR4302540.2647261/1‑71 (MQ=60)
GTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcaccccccccccccccccccccgggcg > SRR4302540.5072043/1‑67 (MQ=60)
GTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCGCCCTAACCCTCTCCCTCAGGGAGAG < SRR4302540.3180870/94‑1 (MQ=60)
GTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAG < SRR4302540.1309162/94‑1 (MQ=60)
TAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCCCACCCcccccccccccctccccggggg > SRR4302540.4952921/1‑72 (MQ=60)
TAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGG < SRR4302540.8208645/94‑1 (MQ=60)
TAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGG < SRR4302540.6918328/94‑1 (MQ=60)
AAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCccccccccccccccccccctcgcacgggg > SRR4302540.4903872/1‑65 (MQ=60)
AAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGG < SRR4302540.6368545/94‑1 (MQ=60)
AGAGTTGCCTGCGGCACTGGCTCCCAGGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCCCCCTAACCCTCTCCCTCAGGGAGAGGGGA < SRR4302540.7223689/94‑1 (MQ=60)
GAGTTACCTGCGGCACTGCCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAC < SRR4302540.2762108/94‑1 (MQ=60)
AGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC < SRR4302540.5711615/94‑1 (MQ=60)
GTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCG < SRR4302540.7526948/94‑1 (MQ=60)
TTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGT < SRR4302540.6543217/94‑1 (MQ=60)
TTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGT < SRR4302540.2111876/94‑1 (MQ=60)
TCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC < SRR4302540.7560045/94‑1 (MQ=60)
GCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC < SRR4302540.9908526/94‑1 (MQ=60)
GCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTC < SRR4302540.9908527/94‑1 (MQ=60)
CCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCG < SRR4302540.8977338/94‑1 (MQ=60)
CCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCG < SRR4302540.5372164/94‑1 (MQ=60)
CTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccaccccctccccccgggggggggggggggtctg > SRR4302540.7054468/1‑55 (MQ=60)
TGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGC < SRR4302540.2185008/94‑1 (MQ=60)
CGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCGCAGGGAGAGGGGACCGTTCGGC < SRR4302540.8334938/94‑1 (MQ=60)
GCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCC‑CACCCCAACCCTCTCCCcccgggggggggggccggttcgcg > SRR4302540.1599844/1‑70 (MQ=60)
GGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCT < SRR4302540.1058927/94‑1 (MQ=60)
CACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT < SRR4302540.7429624/94‑1 (MQ=60)
CACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT < SRR4302540.2422995/94‑1 (MQ=60)
ACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccaaccccccccccccggggaggggggccgtttgcgccgtt > SRR4302540.10119116/1‑48 (MQ=60)
ACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTA < SRR4302540.3478933/94‑1 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCccccccccccccctccctccccccaccgcggggccgccgcgggcggg > SRR4302540.4016042/1‑47 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccacccccccccccccccccagaggggggggggggcgggggg > SRR4302540.606815/1‑47 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTAT < SRR4302540.4440105/94‑1 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTAT < SRR4302540.7236964/94‑1 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTAT < SRR4302540.5402382/94‑1 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTAT < SRR4302540.7188469/94‑1 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTAT < SRR4302540.2041758/94‑1 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTAT < SRR4302540.6052795/94‑1 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTAT < SRR4302540.6867328/94‑1 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTAT < SRR4302540.481382/94‑1 (MQ=60)
TGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCccccccccccccctcccccccggcgagggggggcgtccgggcgcggtg > SRR4302540.5275524/1‑46 (MQ=60)
TGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccccaccccccccccccccggggggggggcgccgcgggcggtt > SRR4302540.6192271/1‑46 (MQ=60)
GGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGT < SRR4302540.6762386/94‑1 (MQ=60)
GCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTA < SRR4302540.2020702/94‑1 (MQ=60)
GCTCCCATGCCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTA < SRR4302540.7241126/94‑1 (MQ=60)
CTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccccccctcccccctcagaggggggggcgcgcggggccctgtggat > SRR4302540.8400920/1‑43 (MQ=60)
CTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTACCCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTAC < SRR4302540.7552260/94‑1 (MQ=60)
CTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTAC < SRR4302540.7073339/94‑1 (MQ=60)
TCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccacccccccccccccccccacggggggcgggggcggcgtctgggtt > SRR4302540.4217166/1‑42 (MQ=60)
CCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCccccccccccccccccccccccaccggggcgggggggggggcgggggtgtgttc > SRR4302540.2550101/1‑40 (MQ=60)
CCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccacccccccccccccccggggggggggggtcggcgcggtgtgttcaac > SRR4302540.8672319/1‑40 (MQ=60)
CCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcaccctcacccccccccccccggggaggggggcggtcggcgcggtctgtacttc > SRR4302540.9997456/1‑40 (MQ=60)
ATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCccccccccccccccccctccctcagagaggggggcccgggggtgtttgttgttcct > SRR4302540.6331895/1‑38 (MQ=60)
ATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccccccccccccccccccgcgaggggggggggcgggggggtggtgctcccc > SRR4302540.2722425/1‑38 (MQ=60)
ATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCccccccccccccccccccccccccacgcggcgggggcggggggggggggcggctct > SRR4302540.7711936/1‑38 (MQ=60)
ATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccaccccccccctccccgcggggggggcggcgggcggggtgtgttgtgctc > SRR4302540.6331896/1‑38 (MQ=60)
ATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccacccccccccccccggggggggggccgggtgggggggtttgtacttccc > SRR4302540.8529033/1‑38 (MQ=60)
ATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCT < SRR4302540.2364613/94‑1 (MQ=60)
ATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCT < SRR4302540.1753136/94‑1 (MQ=60)
TGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTC < SRR4302540.6360817/94‑1 (MQ=60)
TGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTC < SRR4302540.1509757/94‑1 (MQ=60)
GGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccccccccccccccccccgcaggggggggggcgggggggggtgtttttccccc > SRR4302540.6305639/1‑36 (MQ=60)
GGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccaacccccccccccccgcggtggggggagttcgcgcgggctgtataaccctc > SRR4302540.4800789/1‑36 (MQ=60)
CGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccaaccccccccccccgggggggggggccgttgggggctgttgttctcccccccc > SRR4302540.5129095/1‑34 (MQ=60)
CGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcaccccccccctcccccccccggggagggggccgctcggcgcgctttgtactcccccccc > SRR4302540.4960020/1‑34 (MQ=60)
CGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcaccccaccactctcccttcgcggggggggaccgtcttgcgccgctacagattccccacc > SRR4302540.8663626/1‑34 (MQ=60)
GAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCcccccccccacccccccccccccccacgggggggggcggcgggcgcggtgtttcccccccc > SRR4302540.7752242/1‑33 (MQ=60)
GAAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTC < SRR4302540.4959173/94‑1 (MQ=60)
AAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCT < SRR4302540.8638550/94‑1 (MQ=60)
AAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCT < SRR4302540.8638551/94‑1 (MQ=60)
AAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCT < SRR4302540.8471020/94‑1 (MQ=60)
AAAGGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCT < SRR4302540.3661347/94‑1 (MQ=60)
GGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTATTCCCTCACTCTGAA < SRR4302540.6478931/94‑1 (MQ=60)
GGGAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAA < SRR4302540.7812653/94‑1 (MQ=60)
GAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC < SRR4302540.8875915/94‑1 (MQ=60)
GAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC < SRR4302540.8494951/94‑1 (MQ=60)
GAATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAACGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC < SRR4302540.9476964/94‑1 (MQ=60)
AATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACG < SRR4302540.5713062/94‑1 (MQ=60)
AATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACG < SRR4302540.8219239/94‑1 (MQ=60)
AATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACG < SRR4302540.7655237/94‑1 (MQ=60)
AATGCGGCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTATGAAACG < SRR4302540.3743863/94‑1 (MQ=60)
GCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCG < SRR4302540.5538892/94‑1 (MQ=60)
GCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCG < SRR4302540.9581952/94‑1 (MQ=60)
GCATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCG < SRR4302540.8211386/94‑1 (MQ=60)
CATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGGGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGC > SRR4302540.2036241/1‑94 (MQ=60)
ATAGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCA < SRR4302540.331379/94‑1 (MQ=60)
ATAGTCGTTTGCG‑C‑ACCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGac > SRR4302540.365884/1‑92 (MQ=60)
AGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACT < SRR4302540.8738769/94‑1 (MQ=60)
AGTCGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACT < SRR4302540.8738771/94‑1 (MQ=60)
CGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTT < SRR4302540.9449438/94‑1 (MQ=60)
CGTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTT < SRR4302540.4885690/94‑1 (MQ=60)
GTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTT < SRR4302540.4729449/94‑1 (MQ=60)
GTTTGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTAAAACGACACCGCACTCTTT < SRR4302540.1155560/94‑1 (MQ=60)
TGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTT < SRR4302540.9744055/94‑1 (MQ=60)
TGCG‑C‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTT < SRR4302540.9013366/94‑1 (MQ=60)
cgC‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTC < SRR4302540.6982163/92‑1 (MQ=60)
CCC‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGTGACCGTTCGGCGCTGTAGGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTC < SRR4302540.3290416/94‑1 (MQ=60)
CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC < SRR4302540.1720792/94‑1 (MQ=60)
CCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCC < SRR4302540.4947502/94‑1 (MQ=60)
CCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCC > SRR4302540.4290939/1‑94 (MQ=60)
CCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCC > SRR4302540.3270609/1‑94 (MQ=60)
CCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGAGCTGTATGGCCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCC < SRR4302540.6660180/94‑1 (MQ=60)
CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACTGCACTCTTTTTTTCTCCCT > SRR4302540.3122617/1‑94 (MQ=60)
CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT < SRR4302540.4147636/94‑1 (MQ=60)
CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT > SRR4302540.3116134/1‑94 (MQ=60)
CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT > SRR4302540.962322/1‑94 (MQ=60)
CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT > SRR4302540.2109276/1‑94 (MQ=60)
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CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCC‑CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT > NC_000913/3778565‑3778751
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
