Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,778,658 |
(C)5→4 |
intergenic (+14/‑184) |
lldD → / → yibK |
L‑lactate dehydrogenase/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,778,654 | 0 | C | . | 95.4%
| 446.5
/ 12.6
| 110 | intergenic (+10/‑188) | lldD/yibK | L‑lactate dehydrogenase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (5/0); new base . (4/100); total (9/101) |
| Fisher's exact test for biased strand distribution p-value = 1.08e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 128 total aligned reads displayed.
CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTT > NC_000913/3778565‑3778742
|
cGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccc < 2:4679076/93‑1 (MQ=255)
gCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGgcccc > 2:5655006/1‑93 (MQ=255)
gCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcgccc > 1:4712695/1‑93 (MQ=255)
gCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccct < 2:35402/93‑2 (MQ=255)
gCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccct < 2:821851/93‑2 (MQ=255)
gCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGccccc > 1:5050120/1‑93 (MQ=255)
cAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccctc < 1:4730383/93‑3 (MQ=255)
aGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccccccc > 2:5132374/1‑90 (MQ=255)
aTTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCAccc < 2:4425538/93‑1 (MQ=255)
ttCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCACCAccc > 2:404039/1‑93 (MQ=255)
ttCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCAcccc > 1:6267886/1‑92 (MQ=255)
tCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCAcccc > 1:3044824/1‑92 (MQ=255)
tCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTa < 2:15/93‑1 (MQ=255)
cGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGTGGCATAGTCGTTTGCGCccccccccccca > 2:6191647/1‑91 (MQ=255)
cGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCccccccccccaa > 1:2018323/1‑91 (MQ=255)
cGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTaa < 1:2256883/93‑1 (MQ=255)
cGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTaa < 1:5398421/93‑1 (MQ=255)
gCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCCCCCTAAc > 1:1022204/1‑93 (MQ=255)
cTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAAcc < 2:4955057/93‑1 (MQ=255)
gTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCctc < 1:2952634/93‑1 (MQ=255)
gTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCctc < 1:1543851/93‑1 (MQ=255)
tGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCctct < 1:5393252/93‑1 (MQ=255)
tGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCctct < 2:3054016/93‑1 (MQ=255)
gCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCCAccccctc > 2:4998528/1‑90 (MQ=255)
gCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCCAccccctc > 1:4123548/1‑90 (MQ=255)
gCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCtctc < 1:1493379/93‑1 (MQ=255)
gCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCtctc < 1:1460597/93‑1 (MQ=255)
aGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTccc < 1:5652189/93‑1 (MQ=255)
aGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTccc < 2:5526257/93‑1 (MQ=255)
aGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTccc < 2:3964836/93‑1 (MQ=255)
ggggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGGCCCCTCACCCTCAACctcctcc > 1:705759/1‑89 (MQ=255)
ggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCa < 2:149881/93‑1 (MQ=255)
gCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAg < 2:5183602/93‑1 (MQ=255)
gCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAg < 2:4417111/93‑1 (MQ=255)
tGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAggg < 2:1026725/93‑1 (MQ=255)
gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGga < 1:4486302/93‑1 (MQ=255)
gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGga < 1:5634738/93‑1 (MQ=255)
gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGga < 2:3226910/93‑1 (MQ=255)
gTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGgaga < 2:5448347/93‑1 (MQ=255)
gTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGgaga < 2:3327071/93‑1 (MQ=255)
gTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGgaga < 2:6095632/93‑1 (MQ=255)
tAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGagag < 2:458037/93‑1 (MQ=255)
tAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGC‑TCCCCTCACCCTAACCCTCTCCCTCAGGGagag < 1:1813409/93‑1 (MQ=255)
aaaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAgg < 1:118127/93‑1 (MQ=255)
aaaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAgg < 1:2824244/93‑1 (MQ=255)
aaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAggg < 1:4810628/93‑1 (MQ=255)
aaGAGTTGCCTGCGGAACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCCCCCTAACCCTCTCCCTCAGGGAGAggg < 1:2978983/93‑1 (MQ=39)
gagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGa < 2:2859163/93‑1 (MQ=255)
agTTGCCTGCGGCACTTGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCCCCCTAACCCTCTCCCTCAGGGAGAGGGGAc < 1:4186143/93‑1 (MQ=38)
agTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAc < 2:1645056/93‑1 (MQ=255)
gCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCAAACCC‑CTCCCTCAGGGGGAGGGGGCCggt > 1:2070497/1‑91 (MQ=255)
gCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGtt < 2:3662554/93‑1 (MQ=255)
ccTGCGGCACTGTCTCCCATGGCGAAAGGGCATGAGGCATAGTGGTTTGCG‑CCCCTCACCATAACCCTCTCCCTCAGGGAGAGGGGACCGTTc < 2:6290748/93‑1 (MQ=37)
ccTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTc < 1:3907643/93‑1 (MQ=255)
ccTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTc < 1:4854069/93‑1 (MQ=255)
ccTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTc < 1:5360070/93‑1 (MQ=255)
tGCGGCACTGGCTCCCATGGCGAAAGGGAAGGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCgg < 2:635405/93‑1 (MQ=255)
gCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCCAACCCCCCCCCCCCGGGGGGGGGGGCCGtcggg > 2:5170785/1‑89 (MQ=255)
ggCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcgc < 2:2153959/93‑1 (MQ=255)
gCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCt < 1:4124566/93‑1 (MQ=255)
aCTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgt < 1:4529989/93‑1 (MQ=255)
cTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgta < 2:5880848/93‑1 (MQ=255)
cTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgta < 2:2964296/93‑1 (MQ=255)
cTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgta < 2:2824089/93‑1 (MQ=255)
cggCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtat < 2:4189455/92‑1 (MQ=255)
ccATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCAAACCCCTCCCCCCCGGGGGGGGGGCGCGTTGCGC‑CTGTTTGTACTc > 2:3098547/1‑93 (MQ=255)
ccATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTc < 2:2076369/93‑1 (MQ=255)
ccATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCCAAACCCCTCCCCCCCGGGGGGGGGGCCGTTCGGCGCCGTATGTACTc > 1:1003018/1‑93 (MQ=255)
aTGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCCCCCCAAACCCCTCCCCCCTGGGGGGGGGGGCGTCCGGCGCGGTTTGTTTTccc > 1:3058192/1‑93 (MQ=255)
cGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAc < 2:807185/93‑1 (MQ=255)
cGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAc < 2:846695/93‑1 (MQ=255)
gAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAct < 1:1689549/93‑1 (MQ=255)
aaaGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCActc < 2:1364299/93‑1 (MQ=255)
aaGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCActct < 2:1659429/93‑1 (MQ=255)
gggAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGa < 1:400889/93‑1 (MQ=255)
gggAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGa < 2:2746186/93‑1 (MQ=255)
gggAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGa < 1:1912745/93‑1 (MQ=255)
gAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa < 2:1860936/93‑1 (MQ=255)
gAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa < 1:2678521/93‑1 (MQ=255)
gAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa < 2:5114499/93‑1 (MQ=255)
aaTGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAc < 1:5193393/93‑1 (MQ=255)
aaTGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAc < 2:2335053/93‑1 (MQ=255)
aaTGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAc < 2:594190/93‑1 (MQ=255)
tGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGa < 1:694846/93‑1 (MQ=255)
gCGTCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGac < 2:2161744/93‑1 (MQ=255)
ggCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGacac < 2:3346162/93‑1 (MQ=255)
ggCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGacac < 1:4048209/93‑1 (MQ=255)
gCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACAcc < 1:1447793/93‑1 (MQ=255)
aTAGTCGTTTGCG‑CCCCTCACCCTAACCCGCTCCCTCAGGGAGAGGTGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGc < 1:3969178/93‑1 (MQ=255)
aGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAc < 1:3066280/93‑1 (MQ=255)
aGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAc < 1:1412675/93‑1 (MQ=255)
aGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAc < 1:3191111/93‑1 (MQ=255)
aGTCGTGTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTCCGGCGCTGTATGTACTCCCTCTCTCTGAAACGTCACCGCAc < 2:6114763/93‑1 (MQ=37)
gTCGTTTGCG‑CCCCTCACCCTAGCCCTAACCCTCAGGGAAGGGGGACCGTTCGGCGCTGTATGTACTCCCAACCTCTGAAACGACACCGCAct < 2:6303394/93‑1 (MQ=255)
tCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCActc < 2:5948225/93‑1 (MQ=255)
tCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCActc < 2:4277059/93‑1 (MQ=255)
cGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCActct < 1:5506558/93‑1 (MQ=255)
gTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtt < 2:62428/93‑1 (MQ=255)
ttGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtttt < 2:5831180/93‑1 (MQ=255)
ttGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtttt < 2:2132347/93‑1 (MQ=255)
|
CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTT > NC_000913/3778565‑3778742
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCC > NC_000913/3778565‑3778750
|
CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCGCCC > SRR4302533.4741257/1‑94 (MQ=60)
CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCC > SRR4302533.6070810/1‑94 (MQ=60)
CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCC > SRR4302533.5080664/1‑94 (MQ=60)
CAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCA < SRR4302533.4759061/94‑1 (MQ=60)
TTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCACCCC > SRR4302533.3063462/1‑94 (MQ=60)
TCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccaa > SRR4302533.2030759/1‑86 (MQ=60)
CGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCCCCCTAAC > SRR4302533.1028213/1‑94 (MQ=60)
CGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAAC < SRR4302533.2270848/94‑1 (MQ=60)
CGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAAC < SRR4302533.5430860/94‑1 (MQ=60)
GTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCT < SRR4302533.1553151/94‑1 (MQ=60)
GTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCT < SRR4302533.2970689/94‑1 (MQ=60)
TGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccaccccctc > SRR4302533.4148584/1‑79 (MQ=60)
TGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTC < SRR4302533.5425654/94‑1 (MQ=60)
GCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCC < SRR4302533.1469400/94‑1 (MQ=60)
GCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCC < SRR4302533.1502383/94‑1 (MQ=60)
AGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGGCCCCTCACCCTcaacctcctcc > SRR4302533.709927/1‑83 (MQ=60)
AGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCT < SRR4302533.5686352/94‑1 (MQ=60)
GCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGG < SRR4302533.1935028/94‑1 (MQ=60)
GGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAG < SRR4302533.5668811/94‑1 (MQ=60)
GGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAG < SRR4302533.4513462/94‑1 (MQ=60)
GTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAG < SRR4302533.5130169/94‑1 (MQ=60)
TAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccccccccctcccccccctggggg > SRR4302533.5014127/1‑66 (MQ=60)
TAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGC‑TCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGG < SRR4302533.1824482/94‑1 (MQ=60)
AAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGG < SRR4302533.118878/94‑1 (MQ=60)
AAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGG < SRR4302533.2841624/94‑1 (MQ=60)
AAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGG < SRR4302533.4839785/94‑1 (MQ=60)
AAGAGTTGCCTGCGGAACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCCCCCTAACCCTCTCCCTCAGGGAGAGGGG < SRR4302533.2997210/94‑1 (MQ=60)
AGTTGCCTGCGGCACTTGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCCCCCTAACCCTCTCCCTCAGGGAGAGGGGACC < SRR4302533.4211491/94‑1 (MQ=60)
TGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCAAACCC‑CTCCCTCAGGGGGAGGGGGCCGGT > SRR4302533.2083249/1‑94 (MQ=60)
CCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCG < SRR4302533.5392259/94‑1 (MQ=60)
CCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCG < SRR4302533.4883488/94‑1 (MQ=60)
CCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCG < SRR4302533.3931509/94‑1 (MQ=60)
CTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccccccccccccccccccccgcggggggggggtgg > SRR4302533.394039/1‑55 (MQ=60)
TGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGC < SRR4302533.2728662/94‑1 (MQ=60)
GGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccccccccctccccccccgccacgggggcggccggcgcg > SRR4302533.6000988/1‑51 (MQ=60)
GCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG < SRR4302533.4149604/94‑1 (MQ=60)
ACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccctaactctctcccaaagagagagggtggcattcgcgtctt > SRR4302533.3109174/1‑48 (MQ=60)
ACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTA < SRR4302533.4557420/94‑1 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcaccccacacccctcccccccggagaggggggccggtggcggggtct > SRR4302533.939076/1‑47 (MQ=60)
CCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCCAAACCCCTCCCCCCCGGGGGGGGGGCCGTTCGGCGCCGTATGTACTC > SRR4302533.1008880/1‑94 (MQ=34)
CCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcaccccccccccctcccccccccggagggggggggtgggcggtccgtgtactac > SRR4302533.653770/1‑40 (MQ=60)
ATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccaccccccccccccccggggggggggcgggcggcgcggcttgttctcctc > SRR4302533.2854513/1‑38 (MQ=60)
GAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTC < SRR4302533.1699783/94‑1 (MQ=60)
GAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTC < SRR4302533.1699784/94‑1 (MQ=60)
GAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTC < SRR4302533.306039/94‑1 (MQ=60)
AAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCT < SRR4302533.5434979/94‑1 (MQ=60)
AAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccacacccccccccctcccgccgggaggcggcccgcgccgttgttctcccccccctcc > SRR4302533.735414/1‑31 (MQ=60)
AAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccaacctctccccccaggcgaggggggcgcttggggcggtgttttctccctctcccct > SRR4302533.6302375/1‑31 (MQ=60)
AAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccaaacccctccctcccggggggggggcccgtaggcgccgtctcgcatccccccccccg > SRR4302533.3223732/1‑31 (MQ=60)
GGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAA < SRR4302533.1924416/94‑1 (MQ=60)
GGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAA < SRR4302533.403308/94‑1 (MQ=60)
GGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAA < SRR4302533.4811112/94‑1 (MQ=60)
GAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC < SRR4302533.2694938/94‑1 (MQ=60)
GAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC < SRR4302533.3737499/94‑1 (MQ=60)
AATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACG < SRR4302533.5224719/94‑1 (MQ=60)
TGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGAC < SRR4302533.698953/94‑1 (MQ=60)
GCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACA < SRR4302533.1446582/94‑1 (MQ=60)
GGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACC < SRR4302533.4072862/94‑1 (MQ=60)
GCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCG < SRR4302533.1456527/94‑1 (MQ=60)
ATAGTCGTTTGCG‑CCCCTCACCCTAACCCGCTCCCTCAGGGAGAGGTGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCA < SRR4302533.3993354/94‑1 (MQ=60)
AGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACT < SRR4302533.3210740/94‑1 (MQ=60)
AGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACT < SRR4302533.3085114/94‑1 (MQ=60)
AGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACT < SRR4302533.1421219/94‑1 (MQ=60)
CGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTT < SRR4302533.5539788/94‑1 (MQ=60)
GTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTT < SRR4302533.4068169/94‑1 (MQ=60)
TTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTT < SRR4302533.451029/94‑1 (MQ=60)
CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTC < SRR4302533.5670282/94‑1 (MQ=60)
CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC > SRR4302533.644343/1‑94 (MQ=60)
CCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCC > SRR4302533.267895/1‑94 (MQ=60)
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CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCC > NC_000913/3778565‑3778750
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
