Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,862,488	G→A	A471A (GCC→GCT)	yidE ←	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,862,488	0	G	A	99.7%	1311.0 / ‑5.6	361	A471A (GCC→GCT)	yidE	putative transport protein
Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (180/180); total (180/181)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.62e-01

Only 100 of 368 total aligned reads displayed.

TGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGGGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGA  >  NC_000913/3862398‑3862576

tGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGc                                                                                        <  2:7702062/93‑1 (MQ=255)

 gCCAGCATTCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCa                                                                                       <  1:1215918/93‑1 (MQ=255)

 gCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCa                                                                                       <  1:4384797/93‑1 (MQ=255)

  ccAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCAc                                                                                      <  1:8075751/93‑1 (MQ=255)

   cAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCAcc                                                                                     <  2:1802839/93‑1 (MQ=255)

      cATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATa                                                                                  <  1:5673790/93‑1 (MQ=255)

           cGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCCTAACCaa                                                                             >  2:931802/1‑93 (MQ=255)

            gCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAAt                                                                            <  2:1517638/93‑1 (MQ=255)

            gCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAAt                                                                            <  1:3039186/93‑1 (MQ=255)

              acaTGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATcc                                                                          <  2:10032720/93‑1 (MQ=255)

              acaTGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATcc                                                                          >  1:7601414/1‑93 (MQ=255)

              acaTGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATcc                                                                          >  1:6528684/1‑93 (MQ=255)

              acaTGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATcc                                                                          <  2:5318950/93‑1 (MQ=255)

               caTGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCa                                                                         <  1:7734809/93‑1 (MQ=255)

                 aggTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGGGCACCATAACCAATCCAGc                                                                       <  2:5848515/92‑1 (MQ=255)

                    tCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTa                                                                    <  1:467852/93‑1 (MQ=255)

                    gcAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTa                                                                    <  1:5490620/92‑1 (MQ=255)

                      aGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGc                                                                  >  1:606776/1‑93 (MQ=255)

                       ggTAATTCATTTTTGCTAACAACCCCCCCCGAAAGCCAACAGTAATCAGCGGGACGGCGGGGGTCCAGGCACCATAAACAAACCACCTTAGcc                                                                 >  2:8763942/1‑93 (MQ=255)

                       ggTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGcc                                                                 >  2:5596085/1‑93 (MQ=255)

                       ggTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGcc                                                                 <  1:2129949/93‑1 (MQ=255)

                       ggTAATTCATGTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGcc                                                                 <  1:9035007/93‑1 (MQ=255)

                        gTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGccc                                                                >  1:8584975/1‑93 (MQ=255)

                        gTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGccc                                                                <  2:4967562/93‑1 (MQ=255)

                         tAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGTCCt                                                               >  2:2219214/1‑93 (MQ=255)

                         tAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCt                                                               <  1:3586293/93‑1 (MQ=255)

                         tAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCt                                                               >  1:7183232/1‑93 (MQ=255)

                          aaTTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCtt                                                              <  1:8389095/93‑1 (MQ=255)

                           aTTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTc                                                             >  2:3227226/1‑93 (MQ=255)

                           aTTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTc                                                             >  2:4375126/1‑93 (MQ=255)

                           aTTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTc                                                             <  2:513123/93‑1 (MQ=255)

                             tCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGc                                                           >  2:6197553/1‑93 (MQ=255)

                               aTTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCa                                                         <  2:121675/93‑1 (MQ=255)

                               aTTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCa                                                         >  1:3854487/1‑93 (MQ=255)

                               aTTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCa                                                         <  1:9288732/93‑1 (MQ=255)

                                ttttGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAt                                                        <  1:5891770/93‑1 (MQ=255)

                                ttttGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAt                                                        <  2:643970/93‑1 (MQ=255)

                                 tttGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAtt                                                       <  2:5411899/93‑1 (MQ=255)

                                  ttGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTg                                                      <  1:135251/93‑1 (MQ=255)

                                  ttGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTg                                                      >  1:4201247/1‑93 (MQ=255)

                                   tGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGa                                                     >  2:2522266/1‑93 (MQ=255)

                                   tGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGa                                                     >  1:8676214/1‑93 (MQ=255)

                                    ggCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGAc                                                    <  1:6757321/93‑1 (MQ=255)

                                    ggCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGAc                                                    >  2:2619901/1‑93 (MQ=255)

                                    ggCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGAc                                                    <  2:2122817/93‑1 (MQ=255)

                                      cTAACAGCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCa                                                  <  2:7546723/93‑1 (MQ=255)

                                       tAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAg                                                 >  2:8264422/1‑93 (MQ=255)

                                         aCATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAggg                                               <  1:9442942/93‑1 (MQ=255)

                                         aCATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAggg                                               <  1:2818760/93‑1 (MQ=255)

                                          cATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCCCCATTGACCAggga                                              >  2:9866411/1‑92 (MQ=255)

                                           aTCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTa                                             >  2:4331572/1‑93 (MQ=255)

                                           aTCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTa                                             >  2:3972245/1‑93 (MQ=255)

                                           aTCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTa                                             >  1:4907634/1‑93 (MQ=255)

                                            tCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTAt                                            <  2:1995121/93‑1 (MQ=255)

                                            tCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGGGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTAt                                            >  1:1147216/1‑93 (MQ=255)

                                             ccGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTAtt                                           >  1:9397813/1‑93 (MQ=255)

                                             ccGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTAtt                                           <  1:7372299/93‑1 (MQ=255)

                                                  ccAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaa                                      <  2:9104707/93‑1 (MQ=255)

                                                    aGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaaaa                                    >  2:3727056/1‑93 (MQ=255)

                                                    aGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaaaa                                    >  2:2930523/1‑93 (MQ=255)

                                                    aGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaaaa                                    <  2:3568065/93‑1 (MQ=255)

                                                     gAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCGGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAt                                   >  2:6565259/1‑93 (MQ=255)

                                                     gAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAt                                   >  1:2839064/1‑93 (MQ=255)

                                                     gAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAt                                   <  1:716752/93‑1 (MQ=255)

                                                     gAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAt                                   >  1:2513473/1‑93 (MQ=255)

                                                     gAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAt                                   >  2:9568624/1‑93 (MQ=255)

                                                       aTGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACCAAATcc                                 >  2:3156703/1‑93 (MQ=255)

                                                       aTGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATcc                                 >  1:2271788/1‑93 (MQ=255)

                                                        tGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATccc                                >  2:137320/1‑93 (MQ=255)

                                                        tGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATccc                                >  1:5985209/1‑93 (MQ=255)

                                                         gCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATcccc                               >  2:7814014/1‑93 (MQ=255)

                                                         gCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATcccc                               >  1:7520544/1‑93 (MQ=255)

                                                          ccAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCcca                              >  2:4912290/1‑93 (MQ=255)

                                                           cAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCccac                             >  1:1588003/1‑93 (MQ=255)

                                                            aaCAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCccacc                            >  1:1883811/1‑93 (MQ=255)

                                                            aaCAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCccacc                            <  2:7263907/93‑1 (MQ=255)

                                                             aCAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCccacca                           >  2:8441825/1‑93 (MQ=255)

                                                              cAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGAGTATTCACAAAATCCCCACCAg                          >  1:6876825/1‑93 (MQ=255)

                                                                gTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCCATCCAGCTTAGCCCTTAGCCATTGACCAGGGTATTCAAAACAGCCCCACCAGAt                        >  1:1024398/1‑93 (MQ=255)

                                                                gTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGAt                        >  2:7404301/1‑93 (MQ=255)

                                                                   aTCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTc                     <  2:6693125/93‑1 (MQ=255)

                                                                    tCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCa                    <  1:3227226/93‑1 (MQ=255)

                                                                      aGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGa                  >  1:3441387/1‑93 (MQ=255)

                                                                       gCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGAc                 >  2:328088/1‑93 (MQ=255)

                                                                        cGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGAcc                <  2:7076250/93‑1 (MQ=255)

                                                                          gAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCaa              <  2:1658433/93‑1 (MQ=255)

                                                                          gAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCaa              <  1:5145672/93‑1 (MQ=255)

                                                                           aaCGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAAc             <  1:785933/93‑1 (MQ=255)

                                                                               gcggTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGAcc         >  2:8160483/1‑93 (MQ=255)

                                                                                 ggTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCga       <  1:4028711/93‑1 (MQ=255)

                                                                                   tGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCgaga     >  2:680465/1‑93 (MQ=255)

                                                                                   tGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCgaga     <  1:8293865/93‑1 (MQ=255)

                                                                                    gATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCACCGACCGagag    >  2:2602612/1‑93 (MQ=255)

                                                                                    gATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGagag    <  2:6099916/93‑1 (MQ=255)

                                                                                    gATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGagag    <  2:4652687/93‑1 (MQ=255)

                                                                                    gATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGagag    <  1:3721199/93‑1 (MQ=255)

                                                                                     aTCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAgg   <  2:6819576/93‑1 (MQ=255)

                                                                                     aTCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAgg   >  1:8894483/1‑93 (MQ=255)

                                                                                     aTCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAgg   >  1:9759718/1‑93 (MQ=255)

                                                                                      tCAGAGCACCATAACCAATCCAGATTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGa  <  2:5546803/93‑1 (MQ=255)

TGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGGGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGA  >  NC_000913/3862398‑3862576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 207 total aligned reads displayed.

ACCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGGGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAGC  >  NC_000913/3862395‑3862581

ACCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGA                                                                                               >  SRR4302540.9864595/1‑94 (MQ=60)

ACCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGA                                                                                               <  SRR4302540.7464308/94‑1 (MQ=60)

ACCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGA                                                                                               >  SRR4302540.3255328/1‑94 (MQ=60)

ACCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGA                                                                                               <  SRR4302540.398739/94‑1 (MQ=60)

ACCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGA                                                                                               <  SRR4302540.404596/94‑1 (MQ=60)

ACCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGA                                                                                               >  SRR4302540.5253986/1‑94 (MQ=60)

ACCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGA                                                                                               <  SRR4302540.8754999/94‑1 (MQ=60)

 CCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAG                                                                                              <  SRR4302540.623322/94‑1 (MQ=60)

 CCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAG                                                                                              <  SRR4302540.5633029/94‑1 (MQ=60)

 CCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAG                                                                                              <  SRR4302540.5633028/94‑1 (MQ=60)

 CCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAG                                                                                              >  SRR4302540.2871463/1‑94 (MQ=60)

 CCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAG                                                                                              <  SRR4302540.9689240/94‑1 (MQ=60)

  CTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGC                                                                                             >  SRR4302540.4277151/1‑94 (MQ=60)

  CTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGC                                                                                             <  SRR4302540.3246127/94‑1 (MQ=60)

  CTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGC                                                                                             <  SRR4302540.1557289/94‑1 (MQ=60)

  CTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGC                                                                                             <  SRR4302540.3601958/94‑1 (MQ=60)

   TGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCA                                                                                            <  SRR4302540.455046/94‑1 (MQ=60)

    GCCAGCATTCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCAC                                                                                           <  SRR4302540.1228376/94‑1 (MQ=60)

    GCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCAC                                                                                           <  SRR4302540.4432402/94‑1 (MQ=60)

     CCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACC                                                                                          <  SRR4302540.8169467/94‑1 (MQ=60)

      CAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCA                                                                                         <  SRR4302540.3275691/94‑1 (MQ=60)

       AGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCAT                                                                                        >  SRR4302540.1157371/1‑94 (MQ=60)

       AGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCAA                                                                                        >  SRR4302540.8860320/1‑94 (MQ=60)

         CATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAA                                                                                      >  SRR4302540.3849605/1‑94 (MQ=60)

         CATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAA                                                                                      <  SRR4302540.5736267/94‑1 (MQ=60)

          ATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAAC                                                                                     >  SRR4302540.6131813/1‑94 (MQ=60)

          ATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAAC                                                                                     <  SRR4302540.7302566/94‑1 (MQ=60)

           TCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACC                                                                                    <  SRR4302540.8179638/94‑1 (MQ=60)

            CCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCA                                                                                   <  SRR4302540.6777589/94‑1 (MQ=60)

            CCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCA                                                                                   <  SRR4302540.9408771/94‑1 (MQ=60)

            CCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCA                                                                                   >  SRR4302540.2045691/1‑94 (MQ=60)

            CCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCA                                                                                   <  SRR4302540.9426831/94‑1 (MQ=60)

            CCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCAACATAACCA                                                                                   >  SRR4302540.157630/1‑94 (MQ=60)

             CCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAA                                                                                  >  SRR4302540.3622374/1‑94 (MQ=60)

             CCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAA                                                                                  <  SRR4302540.8200023/94‑1 (MQ=60)

              CGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAAT                                                                                 <  SRR4302540.297663/94‑1 (MQ=60)

               GCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATC                                                                                <  SRR4302540.3072537/94‑1 (MQ=60)

               GCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATC                                                                                >  SRR4302540.941405/1‑94 (MQ=60)

                CACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCC                                                                               >  SRR4302540.3732979/1‑94 (MQ=60)

                CACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCC                                                                               >  SRR4302540.7686818/1‑94 (MQ=60)

                CACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCC                                                                               <  SRR4302540.7903923/94‑1 (MQ=60)

                CACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCC                                                                               >  SRR4302540.6601179/1‑94 (MQ=60)

                 ACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCA                                                                              >  SRR4302540.4414470/1‑94 (MQ=60)

                 ACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCA                                                                              <  SRR4302540.6377057/94‑1 (MQ=60)

                  CATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAG                                                                             <  SRR4302540.7825109/94‑1 (MQ=60)

                   ATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGC                                                                            >  SRR4302540.6039188/1‑94 (MQ=60)

                   ATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGC                                                                            >  SRR4302540.6039189/1‑94 (MQ=60)

                   ATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGC                                                                            >  SRR4302540.6123318/1‑94 (MQ=60)

                     GGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTT                                                                          <  SRR4302540.4195170/94‑1 (MQ=60)

                     GGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTT                                                                          <  SRR4302540.4068779/94‑1 (MQ=60)

                      GTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTA                                                                         <  SRR4302540.7060392/94‑1 (MQ=60)

                       TGAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAG                                                                        <  SRR4302540.472858/94‑1 (MQ=60)

                       TCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAG                                                                        <  SRR4302540.2832851/94‑1 (MQ=60)

                       TCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAG                                                                        >  SRR4302540.10085198/1‑94 (MQ=60)

                       TCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAG                                                                        <  SRR4302540.472857/94‑1 (MQ=60)

                       TCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAG                                                                        <  SRR4302540.7443570/94‑1 (MQ=60)

                       GCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAG                                                                        <  SRR4302540.5551068/94‑1 (MQ=60)

                        CAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGC                                                                       <  SRR4302540.649804/94‑1 (MQ=60)

                        CAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGC                                                                       >  SRR4302540.613262/1‑94 (MQ=60)

                        CAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGC                                                                       >  SRR4302540.6934475/1‑94 (MQ=60)

                        CAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACAGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGC                                                                       >  SRR4302540.6748772/1‑94 (MQ=60)

                         AGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCC                                                                      <  SRR4302540.8896377/94‑1 (MQ=60)

                         AGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCC                                                                      >  SRR4302540.1172701/1‑94 (MQ=60)

                          GGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCC                                                                     >  SRR4302540.7829997/1‑94 (MQ=60)

                          GGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCC                                                                     >  SRR4302540.8684780/1‑94 (MQ=60)

                          GGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCC                                                                     <  SRR4302540.2152802/94‑1 (MQ=60)

                          GGTAATTCATGTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCC                                                                     <  SRR4302540.9143438/94‑1 (MQ=60)

                           GTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCT                                                                    >  SRR4302540.1976381/1‑94 (MQ=60)

                           GTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCT                                                                    >  SRR4302540.7263314/1‑94 (MQ=60)

                            TAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTT                                                                   <  SRR4302540.3625461/94‑1 (MQ=60)

                            TAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTT                                                                   >  SRR4302540.3842450/1‑94 (MQ=60)

                             AATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTC                                                                  <  SRR4302540.1523108/94‑1 (MQ=60)

                             AATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTC                                                                  <  SRR4302540.4017005/94‑1 (MQ=60)

                             AATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTC                                                                  <  SRR4302540.8486431/94‑1 (MQ=60)

                              ATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCG                                                                 <  SRR4302540.5687512/94‑1 (MQ=60)

                              ATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCG                                                                 <  SRR4302540.6274428/94‑1 (MQ=60)

                              ATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCG                                                                 >  SRR4302540.1263091/1‑94 (MQ=60)

                              ATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCG                                                                 <  SRR4302540.5838976/94‑1 (MQ=60)

                              ATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCG                                                                 >  SRR4302540.331298/1‑94 (MQ=60)

                               TTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGC                                                                <  SRR4302540.8051372/94‑1 (MQ=60)

                                 CATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCA                                                              >  SRR4302540.3896394/1‑94 (MQ=60)

                                 CATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCA                                                              <  SRR4302540.1106048/94‑1 (MQ=60)

                                  ATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAT                                                             <  SRR4302540.374583/94‑1 (MQ=60)

                                  ATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAT                                                             <  SRR4302540.9399740/94‑1 (MQ=60)

                                  ATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAT                                                             >  SRR4302540.117024/1‑94 (MQ=60)

                                  ATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAT                                                             >  SRR4302540.5141521/1‑94 (MQ=60)

                                   TTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATT                                                            <  SRR4302540.5956859/94‑1 (MQ=60)

                                   TTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATT                                                            <  SRR4302540.9547461/94‑1 (MQ=60)

                                   TGTTGGCTAGCATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATT                                                            <  SRR4302540.286496/94‑1 (MQ=60)

                                    TTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTG                                                           >  SRR4302540.4246959/1‑94 (MQ=60)

                                     TTGGCTACCCTCCGCGCCAGCATGCCGGCAGTCATCAGCGGACCGGCGGTGATCAGAGCACCATACCCAATCCAGCTTAGCCCTTCGCCATTGA                                                          <  SRR4302540.9056795/94‑1 (MQ=53)

                                     TTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGA                                                          <  SRR4302540.1708730/94‑1 (MQ=60)

                                     TTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGA                                                          <  SRR4302540.136667/94‑1 (MQ=60)

                                     TTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGA                                                          >  SRR4302540.8776987/1‑94 (MQ=60)

                                      TGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGAC                                                         <  SRR4302540.4810856/94‑1 (MQ=60)

                                      TGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGAC                                                         <  SRR4302540.9296928/94‑1 (MQ=60)

                                      TGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGAC                                                         <  SRR4302540.2370716/94‑1 (MQ=60)

                                      TGGCGACCATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTCATCAGAGCACCATAACCAATCCACCTTAGCCCTTCGCCATTGAC                                                         <  SRR4302540.4810855/94‑1 (MQ=60)

                                       GGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACC                                                        <  SRR4302540.6831992/94‑1 (MQ=60)

                                        GCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCA                                                       >  SRR4302540.7497458/1‑94 (MQ=60)

                                        GCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCA                                                       >  SRR4302540.7725228/1‑94 (MQ=60)

                                        GCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCA                                                       <  SRR4302540.8705165/94‑1 (MQ=60)

                                         CTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAG                                                      >  SRR4302540.785197/1‑94 (MQ=60)

                                         CTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAG                                                      <  SRR4302540.1195184/94‑1 (MQ=60)

                                         CTAACAACCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAG                                                      <  SRR4302540.7145792/94‑1 (MQ=60)

                                          TAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCTTTCGCCATTGACgacg                                                     >  SRR4302540.5909836/1‑90 (MQ=60)

                                          TAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGG                                                     <  SRR4302540.4190540/94‑1 (MQ=60)

                                          TAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGG                                                     >  SRR4302540.5455928/1‑94 (MQ=60)

                                           AACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGG                                                    >  SRR4302540.3576827/1‑94 (MQ=60)

                                            ACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGT                                                   <  SRR4302540.2849207/94‑1 (MQ=60)

                                            ACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGT                                                   <  SRR4302540.5318857/94‑1 (MQ=60)

                                            ACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGT                                                   <  SRR4302540.9555060/94‑1 (MQ=60)

                                             CATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTA                                                  >  SRR4302540.8522368/1‑94 (MQ=60)

                                             CATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTA                                                  >  SRR4302540.1335367/1‑94 (MQ=60)

                                             CATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTA                                                  >  SRR4302540.4960463/1‑94 (MQ=60)

                                              ATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTAT                                                 >  SRR4302540.3756036/1‑94 (MQ=60)

                                              ATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGGGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTAT                                                 >  SRR4302540.1159185/1‑94 (MQ=60)

                                               TCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATT                                                >  SRR4302540.9509630/1‑94 (MQ=60)

                                               TCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATT                                                >  SRR4302540.3110316/1‑94 (MQ=60)

                                                CCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCGCCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTC                                               <  SRR4302540.2950622/94‑1 (MQ=60)

                                                CCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTC                                               <  SRR4302540.7454476/94‑1 (MQ=60)

                                                CCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTC                                               <  SRR4302540.6951251/94‑1 (MQ=60)

                                                   CGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACA                                            >  SRR4302540.2922176/1‑94 (MQ=60)

                                                    GCCACAATGCCAACAGTAATCAGCGGAACGGCGGTGATGATAGCAACATAACCAATCCAGCTTAGCCCTCCGCCATTGACCAGGGTATTCACAA                                           <  SRR4302540.4135708/94‑1 (MQ=60)

                                                     CCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAA                                          >  SRR4302540.4680913/1‑94 (MQ=60)

                                                     CCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAA                                          <  SRR4302540.771890/94‑1 (MQ=60)

                                                      CAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAA                                         <  SRR4302540.2387289/94‑1 (MQ=60)

                                                      CAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAA                                         >  SRR4302540.8468322/1‑94 (MQ=60)

                                                      CAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAA                                         <  SRR4302540.2865746/94‑1 (MQ=60)

                                                       AGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAT                                        >  SRR4302540.3937557/1‑94 (MQ=60)

                                                       AGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAT                                        <  SRR4302540.1727624/94‑1 (MQ=60)

                                                       AGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAT                                        >  SRR4302540.2540627/1‑94 (MQ=60)

                                                       AGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAT                                        >  SRR4302540.2869774/1‑94 (MQ=60)

                                                       AGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAT                                        >  SRR4302540.2540626/1‑94 (MQ=60)

                                                        GAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATC                                       <  SRR4302540.724441/94‑1 (MQ=60)

                                                         AATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCC                                      >  SRR4302540.2296169/1‑94 (MQ=60)

                                                          ATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCC                                     >  SRR4302540.3077928/1‑94 (MQ=60)

                                                          ATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCC                                     >  SRR4302540.8415249/1‑94 (MQ=60)

                                                          ATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCC                                     >  SRR4302540.6051493/1‑94 (MQ=60)

                                                           TGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCC                                    <  SRR4302540.1892377/94‑1 (MQ=60)

                                                           TGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCC                                    >  SRR4302540.7604653/1‑94 (MQ=60)

                                                            GCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCA                                   <  SRR4302540.9123927/94‑1 (MQ=60)

                                                            GCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCA                                   <  SRR4302540.8583955/94‑1 (MQ=60)

                                                            GCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGGATTCACAAAATCCCCA                                   >  SRR4302540.570813/1‑94 (MQ=60)

                                                             CCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGTGTATTCACAAAATCCCCAC                                  >  SRR4302540.8008502/1‑94 (MQ=60)

                                                             CCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCAC                                  >  SRR4302540.1605352/1‑94 (MQ=60)

                                                             CCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCAC                                  >  SRR4302540.8263482/1‑94 (MQ=60)

                                                             CCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCAC                                  >  SRR4302540.7674153/1‑94 (MQ=60)

                                                             CCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCAC                                  <  SRR4302540.7721641/94‑1 (MQ=60)

                                                             CCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCAC                                  <  SRR4302540.2109138/94‑1 (MQ=60)

                                                              CAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACC                                 >  SRR4302540.1904451/1‑94 (MQ=60)

                                                               AACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCA                                >  SRR4302540.6905162/1‑94 (MQ=60)

                                                               AACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCA                                >  SRR4302540.9796755/1‑94 (MQ=60)

                                                                ACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGAGTATTCACAAAATCCCCACCAG                               >  SRR4302540.6953047/1‑94 (MQ=60)

                                                                  AGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCCATCCAGCTTAGCCCTTAGCCATTGACCAGGGTATTCAAAACAGCCCCACCAGAT                             >  SRR4302540.1034790/1‑94 (MQ=60)

                                                                    TAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTT                           >  SRR4302540.9552905/1‑94 (MQ=60)

                                                                     AATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTC                          >  SRR4302540.5527462/1‑94 (MQ=60)

                                                                      ATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCA                         <  SRR4302540.7255751/94‑1 (MQ=60)

                                                                      ATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCA                         <  SRR4302540.7255752/94‑1 (MQ=60)

                                                                      ATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCA                         <  SRR4302540.9179675/94‑1 (MQ=60)

                                                                       TCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAG                        <  SRR4302540.3262311/94‑1 (MQ=60)

                                                                        CAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCTCAAAATCCCCACCAGATTTCAGA                       >  SRR4302540.8726388/1‑94 (MQ=60)

                                                                        CAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGA                       >  SRR4302540.2209563/1‑94 (MQ=60)

                                                                        CAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGA                       <  SRR4302540.722590/94‑1 (MQ=60)

                                                                         AGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGAC                      >  SRR4302540.5893164/1‑94 (MQ=60)

                                                                         AGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGAC                      >  SRR4302540.3593266/1‑94 (MQ=60)

                                                                          GCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACC                     <  SRR4302540.9765985/94‑1 (MQ=60)

                                                                           CGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCA                    >  SRR4302540.2686400/1‑94 (MQ=60)

                                                                           CGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCA                    <  SRR4302540.10026560/94‑1 (MQ=60)

                                                                           CGGAACGGCGGGGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCA                    >  SRR4302540.4908749/1‑94 (MQ=60)

                                                                             GAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAAC                  >  SRR4302540.874187/1‑94 (MQ=60)

                                                                             GAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAAC                  <  SRR4302540.5201412/94‑1 (MQ=60)

                                                                              AACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACG                 <  SRR4302540.7414907/94‑1 (MQ=60)

                                                                              AACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACG                 >  SRR4302540.7641590/1‑94 (MQ=60)

                                                                              AACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACG                 <  SRR4302540.794290/94‑1 (MQ=60)

                                                                              AACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACG                 <  SRR4302540.1364080/94‑1 (MQ=60)

                                                                                 GGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACC              <  SRR4302540.5193019/94‑1 (MQ=60)

                                                                                   CGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGA            >  SRR4302540.421024/1‑94 (MQ=60)

                                                                                    GGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAG           >  SRR4302540.9367471/1‑94 (MQ=60)

                                                                                    GGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAG           >  SRR4302540.1005618/1‑94 (MQ=60)

                                                                                    GGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAG           <  SRR4302540.4072155/94‑1 (MQ=60)

                                                                                    GGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAG           >  SRR4302540.755979/1‑94 (MQ=60)

                                                                                    GGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCACCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAG           >  SRR4302540.9648386/1‑94 (MQ=60)

                                                                                      TGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAG         <  SRR4302540.8390176/94‑1 (MQ=60)

                                                                                      GGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAG         <  SRR4302540.8390177/94‑1 (MQ=60)

                                                                                       TATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGG        <  SRR4302540.3250969/94‑1 (MQ=60)

                                                                                       GATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGG        <  SRR4302540.3761798/94‑1 (MQ=60)

                                                                                       GATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGG        >  SRR4302540.8997440/1‑94 (MQ=60)

                                                                                       GATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGG        >  SRR4302540.2532385/1‑94 (MQ=60)

                                                                                        ATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGA       >  SRR4302540.5643793/1‑94 (MQ=60)

                                                                                           AGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACA    >  SRR4302540.3799456/1‑94 (MQ=60)

                                                                                           AGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACA    >  SRR4302540.8296962/1‑94 (MQ=60)

                                                                                           AGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACA    <  SRR4302540.6368507/94‑1 (MQ=60)

                                                                                            GAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCGCCAGATTTCAGACCAACGACCGAGAGGAACAG   <  SRR4302540.2263406/94‑1 (MQ=60)

                                                                                            GAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAG   <  SRR4302540.7917089/94‑1 (MQ=60)

                                                                                            GAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAG   <  SRR4302540.2039492/94‑1 (MQ=60)

                                                                                            GAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAG   <  SRR4302540.1222303/94‑1 (MQ=60)

                                                                                            GAGCACCATAACCAAGCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAG   <  SRR4302540.6524768/94‑1 (MQ=60)

                                                                                             AGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAGC  <  SRR4302540.3162740/94‑1 (MQ=60)

                                                                                             AGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAGC  >  SRR4302540.2361704/1‑94 (MQ=60)

ACCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGGGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAGC  >  NC_000913/3862395‑3862581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`