Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,862,488	G→A	A471A (GCC→GCT)	yidE ←	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,862,488	0	G	A	100.0%	836.1 / NA	225	A471A (GCC→GCT)	yidE	putative transport protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (103/122); total (103/122)

Only 100 of 228 total aligned reads displayed.

GCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGGGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAA  >  NC_000913/3862399‑3862577

gCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCa                                                                                        <  2:2536368/93‑1 (MQ=255)

gCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCa                                                                                        <  2:5937318/93‑1 (MQ=255)

gCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCa                                                                                        <  2:4366392/93‑1 (MQ=255)

 ccAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCAc                                                                                       <  1:4170619/93‑1 (MQ=255)

  cAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCAcc                                                                                      >  2:3342739/1‑93 (MQ=255)

   aGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCa                                                                                     >  1:5259646/1‑93 (MQ=255)

   aGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCa                                                                                     >  2:5427522/1‑93 (MQ=255)

   aGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCa                                                                                     >  1:4834053/1‑93 (MQ=255)

   aGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGAACCa                                                                                     >  1:2884988/1‑93 (MQ=255)

    gCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCAt                                                                                    >  2:3926369/1‑93 (MQ=255)

     cATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATa                                                                                   >  2:4603592/1‑93 (MQ=255)

        cccGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAAcc                                                                                >  2:2262166/1‑93 (MQ=255)

          cGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCaa                                                                              <  1:37375/93‑1 (MQ=255)

          cGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCaa                                                                              >  1:1175097/1‑93 (MQ=255)

             acaTGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATcc                                                                           >  2:3539173/1‑93 (MQ=255)

              caTGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCa                                                                          <  2:4789713/93‑1 (MQ=255)

                tGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGc                                                                        >  1:1081150/1‑93 (MQ=255)

                tGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGc                                                                        >  2:2816924/1‑93 (MQ=255)

                 ggTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCt                                                                       <  1:4937964/93‑1 (MQ=255)

                  gTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCtt                                                                      >  1:877238/1‑93 (MQ=255)

                  gTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCtt                                                                      >  1:409750/1‑93 (MQ=255)

                   tCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTa                                                                     <  1:657802/93‑1 (MQ=255)

                   tCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCACCTTa                                                                     >  1:1863615/1‑93 (MQ=255)

                    cAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAg                                                                    <  1:5147165/93‑1 (MQ=255)

                     aGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGc                                                                   <  2:902743/93‑1 (MQ=255)

                      ggTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGcc                                                                  >  1:4356423/1‑93 (MQ=255)

                       gTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGccc                                                                 >  2:578705/1‑93 (MQ=255)

                        tAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCt                                                                >  1:2430854/1‑93 (MQ=255)

                        tAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCt                                                                <  1:1889951/93‑1 (MQ=255)

                          aTTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTc                                                              >  2:751561/1‑93 (MQ=255)

                          aTTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTc                                                              >  1:2180906/1‑93 (MQ=255)

                          aTTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGCAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTc                                                              >  2:2978573/1‑93 (MQ=255)

                             cATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGcc                                                           >  2:2663165/1‑93 (MQ=255)

                               ttttGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAt                                                         <  1:2469738/93‑1 (MQ=255)

                               ttttGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAt                                                         >  1:928889/1‑93 (MQ=255)

                                tttGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAtt                                                        <  1:3720362/93‑1 (MQ=255)

                                 ttGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTg                                                       <  2:1877962/93‑1 (MQ=255)

                                    gCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGAcc                                                    <  2:3367925/93‑1 (MQ=255)

                                     cTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCa                                                   >  1:5756720/1‑93 (MQ=255)

                                     cTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCa                                                   <  1:1969551/93‑1 (MQ=255)

                                      tAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAg                                                  <  1:6044966/93‑1 (MQ=255)

                                      tAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAg                                                  <  2:4220332/93‑1 (MQ=255)

                                      tAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAg                                                  <  2:1180601/93‑1 (MQ=255)

                                      tAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAg                                                  <  2:2767510/93‑1 (MQ=255)

                                      tAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAg                                                  <  1:2595028/93‑1 (MQ=255)

                                       aaCATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAgg                                                 >  1:5498346/1‑93 (MQ=255)

                                       aaCATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAgg                                                 <  1:3597909/93‑1 (MQ=255)

                                        aaaTCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAggg                                                >  2:4549949/3‑93 (MQ=255)

                                        aCATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAggg                                                >  1:745375/1‑93 (MQ=255)

                                        aCATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAggg                                                <  1:4561012/93‑1 (MQ=255)

                                           tCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTAt                                             >  2:179803/1‑93 (MQ=255)

                                             cgcgCCAGAATGCCAACAGTAATCAGCGGAACGGCGGCGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGCATTc                                           >  2:1704889/1‑93 (MQ=255)

                                             cgcgCCAGAATGCCAACAGTAATCAGCAGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTc                                           <  1:3991013/93‑1 (MQ=255)

                                              gcgcCAGAATGCCAACAGTAATCAGCGGATCGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTca                                          <  2:2138733/93‑1 (MQ=255)

                                                gcCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTcaca                                        >  2:3308902/1‑93 (MQ=255)

                                                 ccAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaa                                       <  1:1093570/93‑1 (MQ=255)

                                                 ccAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaa                                       >  1:4590982/1‑93 (MQ=255)

                                                  cAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaaa                                      >  1:2148671/1‑93 (MQ=255)

                                                   aGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaaaa                                     >  1:1813718/1‑93 (MQ=255)

                                                   aGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaaaa                                     >  2:4181589/1‑93 (MQ=255)

                                                   aGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACaaaa                                     >  1:5574995/1‑93 (MQ=255)

                                                    gAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAt                                    <  2:5931610/93‑1 (MQ=255)

                                                    gAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAt                                    >  2:4728704/1‑93 (MQ=255)

                                                    gAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAt                                    >  2:6066196/1‑93 (MQ=255)

                                                    gAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAAt                                    >  2:2626729/1‑93 (MQ=255)

                                                     aaagCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATc                                   <  2:5518006/90‑1 (MQ=255)

                                                     aaTGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATc                                   <  2:3599238/93‑1 (MQ=255)

                                                     aaTGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATc                                   <  1:2296216/93‑1 (MQ=255)

                                                     aaTGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATc                                   <  1:6278307/93‑1 (MQ=255)

                                                     aaTGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATc                                   <  1:3777485/93‑1 (MQ=255)

                                                       tGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATccc                                 <  1:308670/93‑1 (MQ=255)

                                                        gCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATcccc                                <  2:1501129/93‑1 (MQ=255)

                                                        gCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATcccc                                >  1:2398161/1‑93 (MQ=255)

                                                         ccAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCcca                               <  1:2365111/93‑1 (MQ=255)

                                                         ccAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCcca                               <  1:1298403/93‑1 (MQ=255)

                                                          cAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCccac                              <  2:1054990/93‑1 (MQ=255)

                                                          cAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCccac                              <  1:5061668/93‑1 (MQ=255)

                                                          cAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCccac                              <  1:5377543/93‑1 (MQ=255)

                                                            aCAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCccacca                            >  2:3697279/1‑93 (MQ=255)

                                                            aCAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCccacca                            >  2:5738177/1‑93 (MQ=255)

                                                            aCAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCccacca                            <  1:4231012/93‑1 (MQ=255)

                                                             cAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAg                           >  1:3449311/1‑93 (MQ=255)

                                                             cAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAg                           >  2:3773566/1‑93 (MQ=255)

                                                              aGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGa                          >  1:3933961/1‑93 (MQ=255)

                                                               gTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGAt                         >  1:5323221/1‑93 (MQ=255)

                                                                tAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGAtt                        <  1:1648973/93‑1 (MQ=255)

                                                                  aTCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTc                      <  1:3029036/93‑1 (MQ=255)

                                                                   tCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCa                     <  2:1561813/93‑1 (MQ=255)

                                                                      gCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGAc                  >  1:4702359/1‑93 (MQ=255)

                                                                       cGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGAcc                 <  2:5283144/93‑1 (MQ=255)

                                                                        ggAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCa                <  1:1512898/93‑1 (MQ=255)

                                                                         gAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCaa               >  1:3373112/1‑93 (MQ=255)

                                                                            cggcggTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGa            >  2:592316/1‑93 (MQ=255)

                                                                             ggcggTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGAc           <  1:1388484/93‑1 (MQ=255)

                                                                              gcggTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGAcc          >  2:2843323/1‑93 (MQ=255)

                                                                                ggTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCga        >  1:5166237/1‑93 (MQ=255)

                                                                                ggTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCga        <  2:4897663/93‑1 (MQ=255)

                                                                                ggTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCga        >  2:3971399/1‑93 (MQ=255)

                                                                                ggTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCga        <  1:3802984/93‑1 (MQ=255)

                                                                                   gATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGagag     <  1:4111916/93‑1 (MQ=255)

GCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGGGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAA  >  NC_000913/3862399‑3862577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGGGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAG  >  NC_000913/3862396‑3862580

CCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAG                                                                                             <  SRR4302533.5228389/94‑1 (MQ=60)

CCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAG                                                                                             <  SRR4302533.2892558/94‑1 (MQ=60)

 CTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGC                                                                                            <  SRR4302533.5694287/94‑1 (MQ=60)

  TGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCA                                                                                           >  SRR4302533.4939756/1‑94 (MQ=60)

   GCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCAC                                                                                          >  SRR4302533.5343212/1‑94 (MQ=60)

    CCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACC                                                                                         <  SRR4302533.4195890/94‑1 (MQ=60)

     CAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCA                                                                                        >  SRR4302533.4863354/1‑94 (MQ=60)

     CAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCA                                                                                        >  SRR4302533.5291226/1‑94 (MQ=60)

     CAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCA                                                                                        >  SRR4302533.2444961/1‑94 (MQ=60)

     CAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGAACCA                                                                                        >  SRR4302533.2902726/1‑94 (MQ=60)

      AGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCAT                                                                                       <  SRR4302533.445638/94‑1 (MQ=60)

       GCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATA                                                                                      >  SRR4302533.423789/1‑94 (MQ=60)

         ATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAAC                                                                                    >  SRR4302533.2410513/1‑94 (MQ=60)

            CCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAA                                                                                 >  SRR4302533.1182151/1‑94 (MQ=60)

             CGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAAT                                                                                <  SRR4302533.37621/94‑1 (MQ=60)

             CGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAAT                                                                                <  SRR4302533.1915912/94‑1 (MQ=60)

                ACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCA                                                                             <  SRR4302533.5359558/94‑1 (MQ=60)

                ACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCA                                                                             <  SRR4302533.5065084/94‑1 (MQ=60)

                 CATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAG                                                                            <  SRR4302533.1479556/94‑1 (MQ=60)

                  ATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGC                                                                           >  SRR4302533.1087529/1‑94 (MQ=60)

                   TGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCT                                                                          <  SRR4302533.5536780/94‑1 (MQ=60)

                   TGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCT                                                                          <  SRR4302533.1099824/94‑1 (MQ=60)

                    GGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTT                                                                         >  SRR4302533.882388/1‑94 (MQ=60)

                    GGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTT                                                                         >  SRR4302533.412207/1‑94 (MQ=60)

                    GGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTT                                                                         <  SRR4302533.519080/94‑1 (MQ=60)

                    GGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTT                                                                         <  SRR4302533.4967859/94‑1 (MQ=60)

                     GTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCACCTTA                                                                        >  SRR4302533.1874984/1‑94 (MQ=60)

                      TCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAG                                                                       <  SRR4302533.661680/94‑1 (MQ=60)

                       CAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGC                                                                      >  SRR4302533.2272948/1‑94 (MQ=60)

                       CAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGC                                                                      <  SRR4302533.5178268/94‑1 (MQ=60)

                       CAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGC                                                                      >  SRR4302533.2101280/1‑94 (MQ=60)

                        AGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCC                                                                     >  SRR4302533.4382718/1‑94 (MQ=60)

                        AGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCC                                                                     <  SRR4302533.2031016/94‑1 (MQ=60)

                          GTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCT                                                                   >  SRR4302533.4696638/1‑94 (MQ=60)

                          GTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCT                                                                   >  SRR4302533.2445879/1‑94 (MQ=60)

                           TAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTT                                                                  >  SRR4302533.3599445/1‑94 (MQ=60)

                           TAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTT                                                                  >  SRR4302533.4147737/1‑94 (MQ=60)

                           TAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTT                                                                  <  SRR4302533.509619/94‑1 (MQ=60)

                           TAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTT                                                                  <  SRR4302533.1901492/94‑1 (MQ=60)

                           TAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTT                                                                  <  SRR4302533.932046/94‑1 (MQ=60)

                            AATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTC                                                                 >  SRR4302533.2194353/1‑94 (MQ=60)

                             ATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCG                                                                <  SRR4302533.5248294/94‑1 (MQ=60)

                                CATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCA                                                             <  SRR4302533.5498695/94‑1 (MQ=60)

                                 ATTTTGTCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAT                                                            <  SRR4302533.4606950/94‑1 (MQ=60)

                                 ATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAT                                                            >  SRR4302533.6115517/1‑94 (MQ=60)

                                 ATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAT                                                            >  SRR4302533.934342/1‑94 (MQ=60)

                                 ATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAT                                                            <  SRR4302533.3782333/94‑1 (MQ=60)

                                 ATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCAT                                                            <  SRR4302533.1168397/94‑1 (MQ=60)

                                  TTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATT                                                           <  SRR4302533.2484973/94‑1 (MQ=60)

                                  TTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATT                                                           <  SRR4302533.3069133/94‑1 (MQ=60)

                                  TTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATT                                                           <  SRR4302533.3653204/94‑1 (MQ=60)

                                   TTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTG                                                          <  SRR4302533.3743194/94‑1 (MQ=60)

                                   TTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTG                                                          <  SRR4302533.961825/94‑1 (MQ=60)

                                    TTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGA                                                         <  SRR4302533.3635456/94‑1 (MQ=60)

                                    TTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGA                                                         <  SRR4302533.1574661/94‑1 (MQ=60)

                                      GGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACC                                                       <  SRR4302533.3414907/94‑1 (MQ=60)

                                       GCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCA                                                      <  SRR4302533.859318/94‑1 (MQ=60)

                                       GCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCA                                                      <  SRR4302533.5859003/94‑1 (MQ=60)

                                       GCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCA                                                      >  SRR4302533.5791459/1‑94 (MQ=60)

                                        CTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAG                                                     >  SRR4302533.259381/1‑94 (MQ=60)

                                        CTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAG                                                     <  SRR4302533.1981596/94‑1 (MQ=60)

                                        CTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAG                                                     >  SRR4302533.1889367/1‑94 (MQ=60)

                                         TAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGG                                                    <  SRR4302533.2610977/94‑1 (MQ=60)

                                         TAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGG                                                    <  SRR4302533.480032/94‑1 (MQ=60)

                                         TAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGG                                                    >  SRR4302533.5531510/1‑94 (MQ=60)

                                         TAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGG                                                    <  SRR4302533.6081585/94‑1 (MQ=60)

                                         TAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGG                                                    >  SRR4302533.1394654/1‑94 (MQ=60)

                                          AACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGG                                                   >  SRR4302533.749760/1‑94 (MQ=60)

                                          AACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGG                                                   <  SRR4302533.2348647/94‑1 (MQ=60)

                                          AACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGG                                                   <  SRR4302533.3620046/94‑1 (MQ=60)

                                           ACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGT                                                  <  SRR4302533.4588675/94‑1 (MQ=60)

                                               CCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTC                                              >  SRR4302533.1348648/1‑94 (MQ=60)

                                                CGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCA                                             >  SRR4302533.2380501/1‑94 (MQ=60)

                                                CGCGCCAGAATGCCAACAGTAATCAGCAGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCA                                             <  SRR4302533.4015317/94‑1 (MQ=60)

                                                   GCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAA                                          >  SRR4302533.3750745/1‑94 (MQ=60)

                                                   GCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAA                                          >  SRR4302533.4618792/1‑94 (MQ=60)

                                                   GCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAA                                          >  SRR4302533.2447367/1‑94 (MQ=60)

                                                    CCAGAATGCCAACAGTAATCAGCGGAACTGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAA                                         >  SRR4302533.5524686/1‑94 (MQ=60)

                                                    CCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAA                                         >  SRR4302533.2161903/1‑94 (MQ=60)

                                                    CCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAA                                         <  SRR4302533.1100040/94‑1 (MQ=60)

                                                    CCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAA                                         >  SRR4302533.4058482/1‑94 (MQ=60)

                                                     CAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAA                                        >  SRR4302533.1824792/1‑94 (MQ=60)

                                                     CAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAA                                        <  SRR4302533.70064/94‑1 (MQ=60)

                                                     CAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAA                                        >  SRR4302533.5608685/1‑94 (MQ=60)

                                                       GAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATC                                      <  SRR4302533.1817461/94‑1 (MQ=60)

                                                        AATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCC                                     <  SRR4302533.2310436/94‑1 (MQ=60)

                                                        AATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCC                                     <  SRR4302533.6315791/94‑1 (MQ=60)

                                                        AATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCC                                     <  SRR4302533.3800632/94‑1 (MQ=60)

                                                          TGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCC                                   >  SRR4302533.2412964/1‑94 (MQ=60)

                                                          TGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCC                                   <  SRR4302533.310559/94‑1 (MQ=60)

                                                          TGCCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCC                                   >  SRR4302533.2823014/1‑94 (MQ=60)

                                                            CCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCAC                                 <  SRR4302533.2379743/94‑1 (MQ=60)

                                                            CCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCAC                                 >  SRR4302533.4152322/1‑94 (MQ=60)

                                                            CCAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCAC                                 <  SRR4302533.1306217/94‑1 (MQ=60)

                                                             CAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCCGGGTATTCACAAAATCCCCACC                                >  SRR4302533.3229920/1‑94 (MQ=60)

                                                             CAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACC                                >  SRR4302533.1840143/1‑94 (MQ=60)

                                                             CAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACC                                <  SRR4302533.5409859/94‑1 (MQ=60)

                                                             CAACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACC                                <  SRR4302533.5092254/94‑1 (MQ=60)

                                                              AACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCA                               >  SRR4302533.3832840/1‑94 (MQ=60)

                                                              AACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCA                               >  SRR4302533.3812030/1‑94 (MQ=60)

                                                               ACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAG                              <  SRR4302533.4256587/94‑1 (MQ=60)

                                                               ACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAG                              <  SRR4302533.1838670/94‑1 (MQ=60)

                                                               ACAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAG                              >  SRR4302533.3470608/1‑94 (MQ=60)

                                                               ACAGCAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAG                              <  SRR4302533.2970859/94‑1 (MQ=60)

                                                                CAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGA                             <  SRR4302533.4298111/94‑1 (MQ=60)

                                                                CAGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGA                             >  SRR4302533.3957972/1‑94 (MQ=60)

                                                                 AGTAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGAT                            >  SRR4302533.5355120/1‑94 (MQ=60)

                                                                   TAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTT                          <  SRR4302533.1658965/94‑1 (MQ=60)

                                                                   TAATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTT                          <  SRR4302533.4126993/94‑1 (MQ=60)

                                                                     ATCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCA                        <  SRR4302533.3047570/94‑1 (MQ=60)

                                                                      TCAGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAG                       <  SRR4302533.5799482/94‑1 (MQ=60)

                                                                        AGCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGAC                     >  SRR4302533.4730868/1‑94 (MQ=60)

                                                                         GCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACC                    <  SRR4302533.3862252/94‑1 (MQ=60)

                                                                         GCGGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACC                    <  SRR4302533.5776634/94‑1 (MQ=60)

                                                                           GGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAA                  <  SRR4302533.1522012/94‑1 (MQ=60)

                                                                           GGAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAA                  >  SRR4302533.3393943/1‑94 (MQ=60)

                                                                            GAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAAC                 >  SRR4302533.2554083/1‑94 (MQ=60)

                                                                            GAACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAAC                 >  SRR4302533.2190026/1‑94 (MQ=60)

                                                                             AACGGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACG                <  SRR4302533.496339/94‑1 (MQ=60)

                                                                                GGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACC             >  SRR4302533.1191399/1‑94 (MQ=60)

                                                                                GGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACC             <  SRR4302533.1396843/94‑1 (MQ=60)

                                                                                GGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACC             <  SRR4302533.4462355/94‑1 (MQ=60)

                                                                                GGCGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACC             <  SRR4302533.640322/94‑1 (MQ=60)

                                                                                  CGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGA           >  SRR4302533.5197432/1‑94 (MQ=60)

                                                                                  CGGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGA           >  SRR4302533.5197431/1‑94 (MQ=60)

                                                                                   GGTGATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAG          <  SRR4302533.3826253/94‑1 (MQ=60)

                                                                                      GATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGG       <  SRR4302533.4136910/94‑1 (MQ=60)

                                                                                      GATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGG       <  SRR4302533.4014664/94‑1 (MQ=60)

                                                                                       ATCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGA      >  SRR4302533.802218/1‑94 (MQ=60)

                                                                                        TCAGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAA     <  SRR4302533.3321527/94‑1 (MQ=60)

                                                                                          AGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACA   <  SRR4302533.3733436/94‑1 (MQ=60)

                                                                                          AGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACA   >  SRR4302533.824818/1‑94 (MQ=60)

                                                                                          AGAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACA   >  SRR4302533.31290/1‑94 (MQ=60)

                                                                                           GAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAG  <  SRR4302533.6120828/94‑1 (MQ=60)

                                                                                           GAGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAG  <  SRR4302533.959456/94‑1 (MQ=60)

CCTGCCAGCATCCCGCACATGGTCAGGTAATTCATTTTGGCTAACATCCGCGCCAGAATGCCAACAGTAATCAGCGGAACGGCGGTGATCAGGGCACCATAACCAATCCAGCTTAGCCCTTCGCCATTGACCAGGGTATTCACAAAATCCCCACCAGATTTCAGACCAACGACCGAGAGGAACAG  >  NC_000913/3862396‑3862580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`