Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,896,607	T→C	T139A (ACG→GCG)	b3718 ←	putative isomerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,896,607	0	T	C	99.6%	1624.5 / ‑5.6	500	T139A (ACG→GCG)	b3718	putative isomerase
Reads supporting (aligned to +/- strand): ref base T (2/0); new base C (267/231); total (269/231)
Fisher's exact test for biased strand distribution p-value = 5.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 503 total aligned reads displayed.

AAAAGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGTATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCAT  >  NC_000913/3896517‑3896696

aaaaGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCAt                                                                                         >  1:4807502/1‑93 (MQ=255)

aaaaGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCAt                                                                                         >  2:9067197/1‑93 (MQ=255)

  aaGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTc                                                                                       >  2:3878085/1‑93 (MQ=255)

   aGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCg                                                                                      <  2:4965839/93‑1 (MQ=255)

   aGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCg                                                                                      >  1:3776734/1‑93 (MQ=255)

     tCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGc                                                                                    <  1:6628345/93‑1 (MQ=255)

     tCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGc                                                                                    >  2:7852053/1‑93 (MQ=255)

     tCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGc                                                                                    <  2:1973505/93‑1 (MQ=255)

       gccgccCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGcca                                                                                  >  1:8259108/1‑91 (MQ=255)

       gccgccCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCaa                                                                                  <  1:3460459/93‑1 (MQ=255)

        ccgccCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCaaa                                                                                 <  2:6486965/93‑1 (MQ=255)

         cgccCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAAt                                                                                <  1:2693635/93‑1 (MQ=255)

         cgccCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAAt                                                                                <  1:9677339/93‑1 (MQ=255)

         cgccCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAAt                                                                                <  2:8150751/93‑1 (MQ=255)

          gccCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAAtt                                                                               <  2:4442323/93‑1 (MQ=255)

          gccCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAAtt                                                                               >  1:1500591/1‑93 (MQ=255)

           cccAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTg                                                                              >  2:1049914/1‑93 (MQ=255)

             cAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGcc                                                                            <  2:6048465/93‑1 (MQ=255)

              aaCTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCCCGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCca                                                                           >  1:7082541/1‑93 (MQ=255)

              aaCTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCca                                                                           <  2:4239679/93‑1 (MQ=255)

               aCTCGCCATGCGCCACAATATCATCCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCcac                                                                          <  2:5530853/93‑1 (MQ=255)

               aCTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCcac                                                                          <  1:2225633/93‑1 (MQ=255)

               aCTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCcac                                                                          <  1:4303798/93‑1 (MQ=255)

                cTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCcaca                                                                         <  1:3200933/93‑1 (MQ=255)

                  cGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGAAAATGGGTCGCATTCGGCAAATTGCCACaaa                                                                       <  1:5575110/93‑1 (MQ=255)

                   gCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACaaaa                                                                      >  1:1576008/1‑93 (MQ=255)

                     cATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAAt                                                                    >  1:9884506/1‑93 (MQ=255)

                     cATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAAt                                                                    <  1:8654145/93‑1 (MQ=255)

                      aTGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCCAATTGCCACAAAAATg                                                                   >  2:3350304/1‑93 (MQ=255)

                      aTGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATg                                                                   >  2:5878359/1‑93 (MQ=255)

                       tGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGa                                                                  >  1:8861725/1‑93 (MQ=255)

                        gcgcCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGAc                                                                 <  2:611680/93‑1 (MQ=255)

                        gcgcCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGAc                                                                 <  1:453872/93‑1 (MQ=255)

                         cgcCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGAcc                                                                <  2:2759807/93‑1 (MQ=255)

                         cgcCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGAcc                                                                <  2:8891469/93‑1 (MQ=255)

                          gcCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCa                                                               >  1:5046092/1‑93 (MQ=255)

                           ccACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCAt                                                              <  2:7196950/93‑1 (MQ=255)

                           ccACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCAt                                                              >  1:7483308/1‑93 (MQ=255)

                            cacaATATCAACCATCTCTCCGTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATc                                                             <  2:8641148/93‑1 (MQ=255)

                             acaATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCt                                                            >  2:2917799/1‑93 (MQ=255)

                             acaATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCt                                                            <  2:1563173/93‑1 (MQ=255)

                              caATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTg                                                           >  2:3565479/1‑93 (MQ=255)

                                 tatCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCAc                                                        >  2:9749946/1‑93 (MQ=255)

                                  atCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCAcc                                                       >  1:4098714/1‑93 (MQ=255)

                                    cAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTa                                                     <  2:8286059/93‑1 (MQ=255)

                                      aCCATCTCTCCCTGGATCGGGACCTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCAccctat                                                   <  2:5632048/93‑5 (MQ=255)

                                      aCCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAAt                                                   <  1:4430630/93‑1 (MQ=255)

                                          tctctcCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATTACCATCTGCACCTAATCCCa                                               <  1:9466951/93‑1 (MQ=255)

                                          tctctcCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCa                                               >  2:4145559/1‑93 (MQ=255)

                                           ctctcCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAg                                              <  2:6710371/93‑1 (MQ=255)

                                           ctctcCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAg                                              <  2:4820193/93‑1 (MQ=255)

                                           ctctcCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAg                                              <  1:1921388/93‑1 (MQ=255)

                                              tcCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGcac                                           >  2:4639991/1‑93 (MQ=255)

                                              tcCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGcac                                           <  1:912672/93‑1 (MQ=255)

                                               cccTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGcacc                                          >  2:4387685/1‑93 (MQ=255)

                                                 cTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGcaccac                                        >  1:2592480/1‑93 (MQ=255)

                                                 cTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGcaccac                                        >  2:251898/1‑93 (MQ=255)

                                                  tGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCaccacc                                       >  1:613384/1‑93 (MQ=255)

                                                    gATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCaa                                     >  1:2757880/1‑93 (MQ=255)

                                                     aTCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCaaa                                    <  2:8070536/93‑1 (MQ=255)

                                                     aTCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCaaa                                    >  2:135013/1‑93 (MQ=255)

                                                       cGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATc                                  <  1:7998043/93‑1 (MQ=255)

                                                        gggAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATcc                                 <  1:1679929/93‑1 (MQ=255)

                                                        gggAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATcc                                 >  1:9733902/1‑93 (MQ=255)

                                                         ggAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCa                                >  1:1230281/1‑93 (MQ=255)

                                                         ggAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCa                                >  2:2217718/1‑93 (MQ=255)

                                                           aaCTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGt                              <  1:4228658/93‑1 (MQ=255)

                                                            aCTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTc                             <  2:7456288/93‑1 (MQ=255)

                                                             cTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTcc                            >  2:9529087/1‑93 (MQ=255)

                                                             cTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTcc                            <  2:1088413/93‑1 (MQ=255)

                                                             cTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTcc                            >  2:5764005/1‑93 (MQ=255)

                                                               ccACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGc                          >  1:6419881/1‑93 (MQ=255)

                                                                cACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGcc                         <  1:2393434/93‑1 (MQ=255)

                                                                 aCGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCt                        >  2:2340587/1‑93 (MQ=255)

                                                                  cGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCtt                       >  2:7665261/1‑93 (MQ=255)

                                                                    gTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCa                     <  2:3782506/93‑1 (MQ=255)

                                                                    gTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCa                     >  1:5956284/1‑93 (MQ=255)

                                                                     tttGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCAc                    <  1:6938001/93‑1 (MQ=255)

                                                                      ttGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCAcg                   >  1:4696810/1‑93 (MQ=255)

                                                                       tGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCAcgc                  >  2:9326303/1‑93 (MQ=255)

                                                                       tGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCAcgc                  >  1:9264103/1‑93 (MQ=255)

                                                                       tGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCAcgc                  >  2:1703183/1‑93 (MQ=255)

                                                                        gCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCAcgcg                 >  1:7293466/1‑93 (MQ=255)

                                                                          tCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGcc               >  1:7683456/1‑93 (MQ=255)

                                                                          tCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGcc               <  1:5671415/93‑1 (MQ=255)

                                                                          tCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGcc               >  1:5420654/1‑93 (MQ=255)

                                                                           cATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCACATCCAGTCCGCCTTCACGCGCCa              >  2:6859514/1‑93 (MQ=255)

                                                                           cATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCa              <  1:8435235/93‑1 (MQ=255)

                                                                           cATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCa              >  2:5170302/1‑93 (MQ=255)

                                                                            aTGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAg             >  2:3151051/1‑93 (MQ=255)

                                                                            aTGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAg             <  2:2578097/93‑1 (MQ=255)

                                                                             tGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGt            >  2:6263132/1‑93 (MQ=255)

                                                                             tGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGt            >  1:211184/1‑93 (MQ=255)

                                                                                 aaTGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCt        <  2:8461914/93‑1 (MQ=255)

                                                                                 aaTGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCt        >  1:742064/1‑93 (MQ=255)

                                                                                  aTGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTg       >  1:6845669/1‑93 (MQ=255)

                                                                                      gTCGCATTCGGCAAATTGCCACATAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCa   <  2:6931899/93‑1 (MQ=255)

                                                                                      gTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCa   <  1:10011690/93‑1 (MQ=255)

                                                                                      gTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCa   <  1:3079487/93‑1 (MQ=255)

                                                                                      gTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCa   <  2:3680643/93‑1 (MQ=255)

AAAAGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGTATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCAT  >  NC_000913/3896517‑3896696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 266 total aligned reads displayed.

CGAAAAGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGTATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCATGCTC  >  NC_000913/3896515‑3896700

CGAAAAGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCA                                                                                              >  SRR4302540.4285496/1‑94 (MQ=60)

CGAAAAGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCA                                                                                              >  SRR4302540.9826462/1‑94 (MQ=60)

 GAAAAGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCAT                                                                                             >  SRR4302540.4858958/1‑94 (MQ=60)

 GAAAAGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCAT                                                                                             <  SRR4302540.3263587/94‑1 (MQ=60)

 GAAAAGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCAT                                                                                             <  SRR4302540.836853/94‑1 (MQ=60)

   AAAGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTC                                                                                           <  SRR4302540.1436580/94‑1 (MQ=60)

   AAAGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTC                                                                                           <  SRR4302540.4190379/94‑1 (MQ=60)

    AAGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCG                                                                                          >  SRR4302540.3817938/1‑94 (MQ=60)

      ATCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTGTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGC                                                                                        <  SRR4302540.6471938/94‑1 (MQ=60)

        CGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAA                                                                                      >  SRR4302540.290750/1‑94 (MQ=60)

        CGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAA                                                                                      <  SRR4302540.1987107/94‑1 (MQ=60)

         GCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAA                                                                                     <  SRR4302540.3498124/94‑1 (MQ=60)

         GCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAA                                                                                     >  SRR4302540.5931769/1‑94 (MQ=60)

          CCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAAT                                                                                    <  SRR4302540.5500592/94‑1 (MQ=60)

           CGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCACATT                                                                                   >  SRR4302540.9817320/1‑94 (MQ=60)

           CGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATT                                                                                   <  SRR4302540.6521002/94‑1 (MQ=60)

           CGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATT                                                                                   >  SRR4302540.8058803/1‑94 (MQ=60)

           CGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATT                                                                                   <  SRR4302540.2722718/94‑1 (MQ=60)

           CGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATT                                                                                   <  SRR4302540.9791199/94‑1 (MQ=60)

           CGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATT                                                                                   >  SRR4302540.4234318/1‑94 (MQ=60)

           CGCCCAACGCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATT                                                                                   <  SRR4302540.6035038/94‑1 (MQ=60)

            GCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTG                                                                                  >  SRR4302540.8154243/1‑94 (MQ=60)

             CCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGC                                                                                 >  SRR4302540.3288711/1‑94 (MQ=60)

               CAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCCCGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCA                                                                               >  SRR4302540.7161366/1‑94 (MQ=60)

               CAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCA                                                                               >  SRR4302540.9962653/1‑94 (MQ=60)

               CAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCA                                                                               <  SRR4302540.268009/94‑1 (MQ=60)

                AACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCAC                                                                              <  SRR4302540.412157/94‑1 (MQ=60)

                 ACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACA                                                                             >  SRR4302540.7691712/1‑94 (MQ=60)

                 ACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACA                                                                             <  SRR4302540.4350642/94‑1 (MQ=60)

                 ACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACA                                                                             >  SRR4302540.6147515/1‑94 (MQ=60)

                  CTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAA                                                                            <  SRR4302540.3235695/94‑1 (MQ=60)

                    CGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAA                                                                          >  SRR4302540.1593254/1‑94 (MQ=60)

                    CGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAA                                                                          >  SRR4302540.1593253/1‑94 (MQ=60)

                    CGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAA                                                                          >  SRR4302540.9185513/1‑94 (MQ=60)

                    CGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGAAAATGGGTCGCATTCGGCAAATTGCCACAAAA                                                                          <  SRR4302540.5636487/94‑1 (MQ=60)

                    CGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGGTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAA                                                                          >  SRR4302540.6785414/1‑94 (MQ=60)

                    CGCCATGCGCCACAATATCAACCATCTCTCCCCGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAA                                                                          >  SRR4302540.2508788/1‑94 (MQ=60)

                     GCCATGCGCCACAATATCGACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAA                                                                         >  SRR4302540.5727958/1‑94 (MQ=60)

                     GCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAA                                                                         <  SRR4302540.4314480/94‑1 (MQ=60)

                      CCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAAT                                                                        <  SRR4302540.6841201/94‑1 (MQ=60)

                       CATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATG                                                                       <  SRR4302540.8754674/94‑1 (MQ=60)

                        ATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGA                                                                      >  SRR4302540.9284723/1‑94 (MQ=60)

                        ATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGA                                                                      >  SRR4302540.6550731/1‑94 (MQ=60)

                        ATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGA                                                                      >  SRR4302540.1608257/1‑94 (MQ=60)

                        ATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGA                                                                      >  SRR4302540.8964270/1‑94 (MQ=60)

                         TGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGAC                                                                     <  SRR4302540.2678550/94‑1 (MQ=60)

                          GCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACC                                                                    <  SRR4302540.4293732/94‑1 (MQ=60)

                          GCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACC                                                                    <  SRR4302540.402072/94‑1 (MQ=60)

                          GCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACC                                                                    <  SRR4302540.7577138/94‑1 (MQ=60)

                          GCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACC                                                                    <  SRR4302540.458715/94‑1 (MQ=60)

                           CGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCA                                                                   >  SRR4302540.7968820/1‑94 (MQ=60)

                           CGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCA                                                                   >  SRR4302540.5100663/1‑94 (MQ=60)

                           CGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCA                                                                   >  SRR4302540.191508/1‑94 (MQ=60)

                            GCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCAT                                                                  >  SRR4302540.1190737/1‑94 (MQ=60)

                            GCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCAT                                                                  >  SRR4302540.2440793/1‑94 (MQ=60)

                            GCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCAT                                                                  >  SRR4302540.9275986/1‑94 (MQ=60)

                             CCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATC                                                                 >  SRR4302540.3224861/1‑94 (MQ=60)

                             CCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATC                                                                 >  SRR4302540.1382414/1‑94 (MQ=60)

                             CCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATC                                                                 <  SRR4302540.8531674/94‑1 (MQ=60)

                              CACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCT                                                                >  SRR4302540.2435262/1‑94 (MQ=60)

                              CACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCT                                                                >  SRR4302540.9166776/1‑94 (MQ=60)

                              CACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCT                                                                >  SRR4302540.430707/1‑94 (MQ=60)

                              CACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCT                                                                >  SRR4302540.2786676/1‑94 (MQ=60)

                               CCAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTG                                                               <  SRR4302540.746433/94‑1 (MQ=60)

                               CCAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTG                                                               <  SRR4302540.8410559/94‑1 (MQ=60)

                               ACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTG                                                               <  SRR4302540.5710594/94‑1 (MQ=60)

                               ACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTG                                                               >  SRR4302540.1066078/1‑94 (MQ=60)

                               ACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTG                                                               >  SRR4302540.8171816/1‑94 (MQ=60)

                               ACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTG                                                               <  SRR4302540.9203642/94‑1 (MQ=60)

                                 AATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGAACATCTGCA                                                             >  SRR4302540.4723800/1‑94 (MQ=60)

                                  ATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCAC                                                            >  SRR4302540.239740/1‑94 (MQ=60)

                                   anncnnncnnCTCTCCCNGNNNNGNNAACTCCACGGTTTGNTCATGGAAATGGGTCGCNTTCGGNAAATTGCCACAAAAATGACCATCTGCACC                                                           <  SRR4302540.1472889/84‑1 (MQ=60)

                                   TATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACC                                                           >  SRR4302540.4142927/1‑94 (MQ=60)

                                    ATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCT                                                          <  SRR4302540.9990968/94‑1 (MQ=60)

                                     TCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTA                                                         >  SRR4302540.2961438/1‑94 (MQ=60)

                                     TCAACCATCGCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTA                                                         <  SRR4302540.6452962/94‑1 (MQ=60)

                                      CAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAA                                                        <  SRR4302540.9641297/94‑1 (MQ=60)

                                       AACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAAT                                                       <  SRR4302540.8489899/94‑1 (MQ=60)

                                       AACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAAT                                                       >  SRR4302540.7497281/1‑94 (MQ=60)

                                       AACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAAT                                                       <  SRR4302540.4369944/94‑1 (MQ=60)

                                       AACCAGCTCTCCCTGGATCGCGAACTCCACGGTTTGCTCATGGAAATGCGGCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAAT                                                       <  SRR4302540.5483506/94‑1 (MQ=60)

                                        ACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATC                                                      <  SRR4302540.4478636/94‑1 (MQ=60)

                                         CCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCC                                                     <  SRR4302540.3158284/94‑1 (MQ=60)

                                          CATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCC                                                    >  SRR4302540.9924603/1‑94 (MQ=60)

                                          CATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCC                                                    >  SRR4302540.3284326/1‑94 (MQ=60)

                                           ATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCA                                                   >  SRR4302540.2057438/1‑94 (MQ=60)

                                            TCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATTACCATCTGCACCTAATCCCAG                                                  <  SRR4302540.9579257/94‑1 (MQ=60)

                                            TCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATTACCATCTGCACCTAATCCCAG                                                  <  SRR4302540.9579256/94‑1 (MQ=60)

                                            TCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAG                                                  <  SRR4302540.4616143/94‑1 (MQ=60)

                                             CTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGC                                                 >  SRR4302540.2308079/1‑94 (MQ=60)

                                             CTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGC                                                 <  SRR4302540.1942340/94‑1 (MQ=60)

                                              TCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCA                                                >  SRR4302540.8332077/1‑94 (MQ=60)

                                               CTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCAC                                               >  SRR4302540.567631/1‑94 (MQ=60)

                                               CTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCAC                                               >  SRR4302540.2656707/1‑94 (MQ=60)

                                               CTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCAC                                               >  SRR4302540.1897589/1‑94 (MQ=60)

                                               CTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCAC                                               >  SRR4302540.1542169/1‑94 (MQ=60)

                                               CTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCAC                                               >  SRR4302540.1542165/1‑94 (MQ=60)

                                               CTCCCTGGATCGGGAACTCCACGG‑TTGCTCATGGAAATGGGGCGCATTCGGCAAATTGCCCCCAAAATGACCAACCGCCCCTAATCCCAACACC                                              >  SRR4302540.8667924/1‑94 (MQ=48)

                                                TCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACC                                              >  SRR4302540.3855872/1‑94 (MQ=60)

                                                TCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACC                                              <  SRR4302540.7418989/94‑1 (MQ=60)

                                                CCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACC                                              <  SRR4302540.860857/94‑1 (MQ=60)

                                                 CCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCA                                             >  SRR4302540.5883813/1‑94 (MQ=60)

                                                  CCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCAC                                            <  SRR4302540.97483/94‑1 (MQ=60)

                                                  CCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCAC                                            >  SRR4302540.2620435/1‑94 (MQ=60)

                                                  CCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCAC                                            <  SRR4302540.4672000/94‑1 (MQ=60)

                                                   CTGGATCGGGAACTCCACGGTTTGCTCATTGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTGAGCCCAGCACTACC                                           >  SRR4302540.9606168/1‑94 (MQ=60)

                                                   CTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACC                                           <  SRR4302540.5147058/94‑1 (MQ=60)

                                                   CTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACC                                           <  SRR4302540.1284736/94‑1 (MQ=60)

                                                   CTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACC                                           >  SRR4302540.619931/1‑94 (MQ=60)

                                                       ATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAAT                                       <  SRR4302540.9817410/94‑1 (MQ=60)

                                                       ATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAAT                                       <  SRR4302540.3229106/94‑1 (MQ=60)

                                                         CGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGTATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCC                                     >  SRR4302540.7096057/1‑94 (MQ=60)

                                                         CGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCC                                     >  SRR4302540.1039968/1‑94 (MQ=60)

                                                         CGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCC                                     <  SRR4302540.7247383/94‑1 (MQ=60)

                                                         CGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCC                                     >  SRR4302540.9848199/1‑94 (MQ=60)

                                                         CGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCC                                     >  SRR4302540.4769879/1‑94 (MQ=60)

                                                         CGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCC                                     <  SRR4302540.8091144/94‑1 (MQ=60)

                                                          GGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCA                                    <  SRR4302540.1698168/94‑1 (MQ=60)

                                                          GGGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCA                                    >  SRR4302540.1242854/1‑94 (MQ=60)

                                                           GGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAG                                   <  SRR4302540.4454380/94‑1 (MQ=60)

                                                           GGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAG                                   >  SRR4302540.4425352/1‑94 (MQ=60)

                                                           GGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAG                                   >  SRR4302540.3566740/1‑94 (MQ=60)

                                                           GGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAG                                   <  SRR4302540.692734/94‑1 (MQ=60)

                                                           GGAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAG                                   <  SRR4302540.6610742/94‑1 (MQ=60)

                                                            GAACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGT                                  <  SRR4302540.4533479/94‑1 (MQ=60)

                                                              ACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCC                                <  SRR4302540.5392145/94‑1 (MQ=60)

                                                              ACTCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCC                                <  SRR4302540.7587693/94‑1 (MQ=60)

                                                                TCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGC                              >  SRR4302540.6491336/1‑94 (MQ=60)

                                                                TCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGC                              >  SRR4302540.8939202/1‑94 (MQ=60)

                                                                TCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGC                              >  SRR4302540.9324583/1‑94 (MQ=60)

                                                                TCCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGC                              >  SRR4302540.8939201/1‑94 (MQ=60)

                                                                 CCACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCC                             >  SRR4302540.621513/1‑94 (MQ=60)

                                                                  CACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCT                            <  SRR4302540.2419224/94‑1 (MQ=60)

                                                                  CACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCT                            >  SRR4302540.1849923/1‑94 (MQ=60)

                                                                   ACGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTT                           >  SRR4302540.4193245/1‑94 (MQ=60)

                                                                    CGGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTC                          >  SRR4302540.9825993/1‑94 (MQ=60)

                                                                     GGTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCA                         <  SRR4302540.2332424/94‑1 (MQ=60)

                                                                      GTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCAC                        <  SRR4302540.276218/94‑1 (MQ=60)

                                                                      GTTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCGGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCAC                        >  SRR4302540.3064492/1‑94 (MQ=60)

                                                                       TTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCCCCACCAAATCCAGTCCGCCTTCACG                       <  SRR4302540.7015225/94‑1 (MQ=60)

                                                                       TTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACG                       <  SRR4302540.27650/94‑1 (MQ=60)

                                                                       TTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACG                       >  SRR4302540.7073063/1‑94 (MQ=60)

                                                                       TTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACG                       <  SRR4302540.7015226/94‑1 (MQ=60)

                                                                       TTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACG                       >  SRR4302540.4747013/1‑94 (MQ=60)

                                                                       TTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACG                       >  SRR4302540.2236487/1‑94 (MQ=60)

                                                                       GTTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACG                       <  SRR4302540.1556260/94‑1 (MQ=60)

                                                                        TTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGC                      >  SRR4302540.9374921/1‑94 (MQ=60)

                                                                        TTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGC                      <  SRR4302540.5211955/94‑1 (MQ=60)

                                                                        TTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGC                      <  SRR4302540.6957058/94‑1 (MQ=60)

                                                                        TTGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGC                      <  SRR4302540.4895435/94‑1 (MQ=60)

                                                                        TTGCTCATGGAAATGGGTCGCATGCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGC                      <  SRR4302540.9617172/94‑1 (MQ=60)

                                                                         TGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCG                     >  SRR4302540.7276862/1‑94 (MQ=60)

                                                                         TGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCG                     >  SRR4302540.7374862/1‑94 (MQ=60)

                                                                         TGCTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCG                     <  SRR4302540.4830936/94‑1 (MQ=60)

                                                                           CTCATGGAAATGGGTCGTATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCC                   >  SRR4302540.9381930/1‑94 (MQ=60)

                                                                           CTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCC                   >  SRR4302540.7547833/1‑94 (MQ=60)

                                                                           CTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCC                   >  SRR4302540.7342057/1‑94 (MQ=60)

                                                                           CTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCC                   >  SRR4302540.3636696/1‑94 (MQ=60)

                                                                           CTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCC                   >  SRR4302540.939615/1‑94 (MQ=60)

                                                                           CTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCC                   >  SRR4302540.2209912/1‑94 (MQ=60)

                                                                           CTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCC                   >  SRR4302540.7770521/1‑94 (MQ=60)

                                                                           CTCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCC                   >  SRR4302540.5480259/1‑94 (MQ=60)

                                                                            TCATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCA                  <  SRR4302540.5733859/94‑1 (MQ=60)

                                                                             CATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAG                 >  SRR4302540.4932777/1‑94 (MQ=60)

                                                                             CATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAG                 <  SRR4302540.8533165/94‑1 (MQ=60)

                                                                             CATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAG                 <  SRR4302540.8533166/94‑1 (MQ=60)

                                                                              ATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGT                >  SRR4302540.213258/1‑94 (MQ=60)

                                                                              ATGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGT                >  SRR4302540.2213109/1‑94 (MQ=60)

                                                                               TGGAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTT               <  SRR4302540.591586/94‑1 (MQ=60)

                                                                                 GAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCACATCCAGTCCGCCTTCACGCGCCAGTTTC             >  SRR4302540.6146232/1‑94 (MQ=60)

                                                                                 GAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTC             <  SRR4302540.7849390/94‑1 (MQ=60)

                                                                                 GAAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTC             >  SRR4302540.1003898/1‑94 (MQ=60)

                                                                                  AAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCT            <  SRR4302540.4546425/94‑1 (MQ=60)

                                                                                  AAATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCT            >  SRR4302540.749983/1‑94 (MQ=60)

                                                                                   AATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTG           >  SRR4302540.2061973/1‑94 (MQ=60)

                                                                                   AATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTG           >  SRR4302540.6921505/1‑94 (MQ=60)

                                                                                   AATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTG           >  SRR4302540.5592074/1‑94 (MQ=60)

                                                                                   AATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTG           <  SRR4302540.4837420/94‑1 (MQ=60)

                                                                                    ATGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGA          >  SRR4302540.1684817/1‑94 (MQ=60)

                                                                                     TGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGAT         >  SRR4302540.337491/1‑94 (MQ=60)

                                                                                     TGGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGAT         <  SRR4302540.7529240/94‑1 (MQ=60)

                                                                                      GGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATC        >  SRR4302540.3356976/1‑94 (MQ=60)

                                                                                      GGGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATC        <  SRR4302540.8699096/94‑1 (MQ=60)

                                                                                       GGTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCA       >  SRR4302540.6886272/1‑94 (MQ=60)

                                                                                        GTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCAT      <  SRR4302540.10128263/94‑1 (MQ=60)

                                                                                        GTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCAT      <  SRR4302540.3113280/94‑1 (MQ=60)

                                                                                        GTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCAT      <  SRR4302540.7042452/94‑1 (MQ=60)

                                                                                        GTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCAT      <  SRR4302540.7561632/94‑1 (MQ=60)

                                                                                        GTCGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCAT      >  SRR4302540.8859933/1‑94 (MQ=60)

                                                                                          CGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCATGC    <  SRR4302540.4087543/94‑1 (MQ=60)

                                                                                          CGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCATGC    <  SRR4302540.7272502/94‑1 (MQ=60)

                                                                                          CGCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTAACGCGCCAGTTTCTGATCATGC    >  SRR4302540.2888947/1‑94 (MQ=60)

                                                                                           GCATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCATGCT   <  SRR4302540.4953153/94‑1 (MQ=60)

                                                                                            CATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCATGCTC  >  SRR4302540.7747749/1‑94 (MQ=60)

                                                                                            CATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCATGCTC  <  SRR4302540.4506912/94‑1 (MQ=60)

                                                                                            CATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCATGCTC  >  SRR4302540.2000768/1‑94 (MQ=60)

                                                                                            CATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCATGCTC  >  SRR4302540.6189693/1‑94 (MQ=60)

                                                                                            CATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCATGCTC  >  SRR4302540.8539946/1‑94 (MQ=60)

                                                                                            CATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCATGCTC  <  SRR4302540.3580478/94‑1 (MQ=60)

                                                                                            CATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCAGCCTTCACGCGCCAGTTTCTGATAATGCTC  >  SRR4302540.2000767/1‑94 (MQ=60)

CGAAAAGTCGCCGCCCAACTCGCCATGCGCCACAATATCAACCATCTCTCCCTGGATCGGGAACTCCACGGTTTGCTCATGGAAATGGGTCGTATTCGGCAAATTGCCACAAAAATGACCATCTGCACCTAATCCCAGCACCACCAAATCCAGTCCGCCTTCACGCGCCAGTTTCTGATCATGCTC  >  NC_000913/3896515‑3896700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`