Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,912,542 T→C D96G (GAT→GGT)  glmU ← N‑acetyl glucosamine‑1‑phosphate uridyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,912,5420TC100.0% 1241.1 / NA 378D96G (GAT→GGT) glmUN‑acetyl glucosamine‑1‑phosphate uridyltransferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (203/175);  total (203/175)

Only 100 of 417 total aligned reads displayed.

ATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCATCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTC  >  NC_000913/3912452‑3912631
                                                                                          |                                                                                         
aTGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTtcacca                                                                                         >  1:6953742/1‑93 (MQ=255)
aTGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTtcacca                                                                                         <  1:2906368/93‑1 (MQ=255)
aTGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTtcacca                                                                                         <  2:355909/93‑1 (MQ=255)
 tGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTcaccat                                                                                        <  1:8617281/93‑1 (MQ=255)
  gCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCaccatc                                                                                       <  2:6437636/93‑1 (MQ=255)
  gCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCaccatc                                                                                       <  2:8929981/93‑1 (MQ=255)
    cACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCgg                                                                                     >  2:2514415/1‑93 (MQ=255)
    cACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCgg                                                                                     <  1:555329/93‑1 (MQ=255)
    cACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCgg                                                                                     <  2:4232770/93‑1 (MQ=255)
    cACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCgg                                                                                     >  1:2791103/1‑93 (MQ=255)
    cACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTAGCCGTAGAGCATTAAAATGTCTTCACCATCgg                                                                                     >  1:3553878/1‑93 (MQ=255)
     ccccTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGc                                                                                    <  2:7308943/92‑1 (MQ=255)
     aCCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGc                                                                                    >  2:7276468/1‑93 (MQ=255)
        cTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCaaa                                                                                 <  1:9566714/93‑1 (MQ=255)
         tGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCaaag                                                                                >  1:1916082/1‑93 (MQ=255)
          gCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCaaaga                                                                               <  2:9198830/93‑1 (MQ=255)
               ttAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAggg                                                                          >  1:9462923/1‑92 (MQ=255)
               ttAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGt                                                                          <  1:9403624/93‑1 (MQ=255)
                tAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTg                                                                         <  1:8046812/93‑1 (MQ=255)
                 aGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGc                                                                        <  1:7517796/93‑1 (MQ=255)
                 aGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGc                                                                        <  1:1418908/93‑1 (MQ=255)
                  gCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCg                                                                       <  1:7148219/93‑1 (MQ=255)
                    aTCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGc                                                                     >  2:1519448/1‑93 (MQ=255)
                    aTCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGc                                                                     <  1:153642/93‑1 (MQ=255)
                    aTCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGc                                                                     <  2:7033381/93‑1 (MQ=255)
                     tCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGcc                                                                    >  2:4985384/1‑93 (MQ=255)
                      cACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCct                                                                   <  2:6769646/93‑1 (MQ=255)
                        cGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCctgc                                                                 >  2:3260982/1‑93 (MQ=255)
                           aGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCtgctgc                                                              <  1:773599/93‑1 (MQ=255)
                            gACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgca                                                             >  2:2235864/1‑93 (MQ=255)
                            gACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgca                                                             <  2:399029/93‑1 (MQ=255)
                            gACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgca                                                             >  2:4413342/1‑93 (MQ=255)
                             aCGCTGGAGTGTTTCGACAGATATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgcat                                                            <  2:852588/93‑1 (MQ=255)
                             aCGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgcat                                                            <  2:666007/93‑1 (MQ=255)
                               gCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgcattg                                                          <  2:9517719/93‑1 (MQ=255)
                                  ggAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgcattgcat                                                       >  1:2443247/1‑93 (MQ=255)
                                  ggAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgcattgcat                                                       <  1:1842763/93‑1 (MQ=255)
                                  ggAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgcattgcat                                                       <  2:5919674/93‑1 (MQ=255)
                                   gAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATg                                                      >  2:4698623/1‑93 (MQ=255)
                                   gAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATg                                                      >  1:1688530/1‑93 (MQ=255)
                                   gAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATg                                                      >  2:2927363/1‑93 (MQ=255)
                                    aGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGa                                                     <  1:6028003/93‑1 (MQ=255)
                                    aGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGa                                                     <  1:4467692/93‑1 (MQ=255)
                                    aGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGa                                                     <  2:9453816/93‑1 (MQ=255)
                                     gtgtTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGAc                                                    >  2:3080249/1‑93 (MQ=255)
                                      tgtTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGAcc                                                   <  1:9868318/93‑1 (MQ=255)
                                      tgtTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGAcc                                                   >  2:4094466/1‑93 (MQ=255)
                                      tgtTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGAcc                                                   >  1:9248660/1‑93 (MQ=255)
                                      tgtTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGAcc                                                   >  2:450026/1‑93 (MQ=255)
                                       gtTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGAccc                                                  <  1:180082/93‑1 (MQ=255)
                                       gtTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGAccc                                                  <  1:847671/93‑1 (MQ=255)
                                        tttCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCg                                                 <  1:8997785/93‑1 (MQ=255)
                                        tttCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCg                                                 >  1:7310371/1‑93 (MQ=255)
                                        tttCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCg                                                 >  2:5277367/1‑93 (MQ=255)
                                         ttCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGt                                                <  1:5143940/93‑1 (MQ=255)
                                          tCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTa                                               >  2:1106173/1‑93 (MQ=255)
                                           cGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTAc                                              <  1:10007134/93‑1 (MQ=255)
                                             aCAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTAccc                                            >  2:6104917/1‑93 (MQ=255)
                                             aCAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGACTGCTGCATTGCATGACCCGTAccc                                            >  2:1279986/1‑93 (MQ=255)
                                              cAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCa                                           <  2:3851502/93‑1 (MQ=255)
                                                 agaTCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAgct                                        <  2:2575396/93‑1 (MQ=255)
                                                   aTCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAgctgc                                      >  2:9764572/1‑93 (MQ=255)
                                                   aTCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAgctgc                                      >  1:5531231/1‑93 (MQ=255)
                                                   aTCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAgctgc                                      >  1:3751452/1‑93 (MQ=255)
                                                    tCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAgctgct                                     >  1:5005202/1‑93 (MQ=255)
                                                    tCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAgctgct                                     >  1:6756022/1‑93 (MQ=255)
                                                     cAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGctc                                    >  1:4940110/1‑93 (MQ=255)
                                                      aGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGctct                                   >  2:7914121/1‑93 (MQ=255)
                                                       gCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTg                                  >  2:8431927/1‑93 (MQ=255)
                                                        cGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGc                                 <  1:3845678/93‑1 (MQ=255)
                                                         ggCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGcc                                <  1:2165046/93‑1 (MQ=255)
                                                         ggCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGcc                                >  1:6318491/1‑93 (MQ=255)
                                                          gCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCt                               <  1:7855589/93‑1 (MQ=255)
                                                            aCGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGa                             >  2:2674411/1‑93 (MQ=255)
                                                             cGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGaa                            <  2:7606377/93‑1 (MQ=255)
                                                              gTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAg                           >  1:1367580/1‑93 (MQ=255)
                                                               tCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGc                          >  1:4613487/1‑93 (MQ=255)
                                                                cGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCa                         <  1:1746573/93‑1 (MQ=255)
                                                                    gTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCa                     >  2:2088271/1‑93 (MQ=255)
                                                                    gTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCa                     >  2:8198144/1‑93 (MQ=255)
                                                                     tAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAg                    >  1:4232982/1‑93 (MQ=255)
                                                                       gagCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGtt                  >  1:5837887/1‑93 (MQ=255)
                                                                       gagCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGtt                  >  1:41056/1‑93 (MQ=255)
                                                                       gagCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGtt                  >  2:4193176/1‑93 (MQ=255)
                                                                         gCATTAAAAGGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTaa                <  2:8663046/93‑1 (MQ=255)
                                                                           aTTAAATTGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAgt              >  2:3435171/1‑92 (MQ=255)
                                                                           aTTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAgg              >  1:6488573/1‑93 (MQ=255)
                                                                            ttAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGt             <  2:10022820/93‑1 (MQ=255)
                                                                             tAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTCCCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGtt            <  1:1093121/93‑1 (MQ=255)
                                                                             tAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGtt            >  2:564198/1‑93 (MQ=255)
                                                                               aaaTGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTgt          >  1:8339389/1‑93 (MQ=255)
                                                                                aaTGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTgtc         >  1:3068576/1‑93 (MQ=255)
                                                                                  tGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTgtcgt       >  1:9097715/1‑93 (MQ=255)
                                                                                   gTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTgtcgtc      <  2:5156797/93‑1 (MQ=255)
                                                                                   gTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTgtcgtc      <  2:3633950/93‑1 (MQ=255)
                                                                                     cTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCtt    <  1:8703714/93‑1 (MQ=255)
                                                                                     cTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCtt    >  1:5329894/1‑93 (MQ=255)
                                                                                      ttCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCttt   <  1:324183/93‑1 (MQ=255)
                                                                                      ttCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCttt   >  2:1846452/1‑93 (MQ=255)
                                                                                       tcaccaTCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTc  >  1:2556401/1‑93 (MQ=255)
                                                                                          |                                                                                         
ATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCATCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTC  >  NC_000913/3912452‑3912631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 243 total aligned reads displayed.
CCAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCATCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCAGCG  >  NC_000913/3912449‑3912635
                                                                                             |                                                                                             
CCAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCAC                                                                                               <  SRR4302540.3392509/94‑1 (MQ=60)
CCAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCAC                                                                                               <  SRR4302540.4102694/94‑1 (MQ=60)
CCAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCAC                                                                                               >  SRR4302540.6975126/1‑94 (MQ=60)
CCAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCAC                                                                                               >  SRR4302540.4984623/1‑94 (MQ=60)
CCAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCAC                                                                                               <  SRR4302540.4948659/94‑1 (MQ=60)
 CAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACC                                                                                              <  SRR4302540.8430188/94‑1 (MQ=60)
 CAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACC                                                                                              >  SRR4302540.7800660/1‑94 (MQ=60)
 CAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACC                                                                                              >  SRR4302540.7800659/1‑94 (MQ=60)
 CAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACC                                                                                              <  SRR4302540.9461397/94‑1 (MQ=60)
  AATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCA                                                                                             >  SRR4302540.10021232/1‑94 (MQ=60)
  AATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCA                                                                                             <  SRR4302540.2115332/94‑1 (MQ=60)
  AATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCA                                                                                             >  SRR4302540.7031104/1‑94 (MQ=60)
  AATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCA                                                                                             >  SRR4302540.1510920/1‑94 (MQ=60)
  AATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGGAGAGCATGAAAATGTCTTCACCA                                                                                             >  SRR4302540.9099146/1‑94 (MQ=60)
   ATGCCCCCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCAT                                                                                            <  SRR4302540.7267695/94‑1 (MQ=60)
   ATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAGATGTCTTCACCAT                                                                                            >  SRR4302540.1750956/1‑94 (MQ=60)
   ATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCAT                                                                                            <  SRR4302540.7216146/94‑1 (MQ=60)
   ATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCAT                                                                                            >  SRR4302540.8665714/1‑94 (MQ=60)
   ATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCAT                                                                                            <  SRR4302540.2938103/94‑1 (MQ=60)
   ATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCAT                                                                                            >  SRR4302540.8087691/1‑94 (MQ=60)
    TGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATC                                                                                           <  SRR4302540.8717390/94‑1 (MQ=60)
    TGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATC                                                                                           <  SRR4302540.9786313/94‑1 (MQ=60)
    TGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATC                                                                                           <  SRR4302540.7872048/94‑1 (MQ=60)
     GCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCG                                                                                          >  SRR4302540.4574752/1‑94 (MQ=60)
     GCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCG                                                                                          <  SRR4302540.2244108/94‑1 (MQ=60)
      CCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGG                                                                                         <  SRR4302540.9751048/94‑1 (MQ=60)
      CCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGG                                                                                         >  SRR4302540.8276444/1‑94 (MQ=60)
       CGCCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGC                                                                                        >  SRR4302540.8574997/1‑94 (MQ=60)
       CACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGC                                                                                        >  SRR4302540.4085219/1‑94 (MQ=60)
       CACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGC                                                                                        <  SRR4302540.561388/94‑1 (MQ=60)
       CACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGC                                                                                        >  SRR4302540.10022522/1‑94 (MQ=60)
        ACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCA                                                                                       >  SRR4302540.1122837/1‑94 (MQ=60)
        ACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCA                                                                                       >  SRR4302540.612518/1‑94 (MQ=60)
         CCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAA                                                                                      >  SRR4302540.1431243/1‑94 (MQ=60)
         CCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAA                                                                                      >  SRR4302540.1431244/1‑94 (MQ=60)
          CCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAA                                                                                     >  SRR4302540.6535672/1‑94 (MQ=60)
           CTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAG                                                                                    >  SRR4302540.1936994/1‑94 (MQ=60)
           CTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAG                                                                                    >  SRR4302540.8931276/1‑94 (MQ=60)
            TGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGA                                                                                   >  SRR4302540.5773612/1‑94 (MQ=60)
             GCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAA                                                                                  <  SRR4302540.2620397/94‑1 (MQ=60)
              gtgtaTAGCATCACGCAGACGCTGGAGTTTTTCGACAGAGATCAGAGTCATGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAA                                                                                 <  SRR4302540.2483440/89‑1 (MQ=60)
              cgtgttagcatcacgtaggtgcttgatTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGATCATTAAAATGTCTTCACCATCGGCAAAGAAA                                                                                 <  SRR4302540.8769180/67‑1 (MQ=60)
              CGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAA                                                                                 >  SRR4302540.3059104/1‑94 (MQ=60)
              CGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAA                                                                                 <  SRR4302540.2900655/94‑1 (MQ=60)
               GGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAG                                                                                <  SRR4302540.8288286/94‑1 (MQ=60)
               GGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAG                                                                                >  SRR4302540.1900233/1‑94 (MQ=60)
               GGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAG                                                                                <  SRR4302540.6609220/94‑1 (MQ=60)
               GGTTTAGCATCACGCAGACGCTGGAGTGTGTCGGCAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAG                                                                                <  SRR4302540.3602832/94‑1 (MQ=60)
                GTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGG                                                                               >  SRR4302540.6382213/1‑94 (MQ=60)
                GTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGG                                                                               >  SRR4302540.441482/1‑94 (MQ=60)
                GTTTAGCAGCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGG                                                                               <  SRR4302540.5035803/94‑1 (MQ=60)
                GTGTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGG                                                                               <  SRR4302540.5035804/94‑1 (MQ=60)
                 TTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGT                                                                              <  SRR4302540.7049871/94‑1 (MQ=60)
                 TTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGT                                                                              <  SRR4302540.8447266/94‑1 (MQ=60)
                 TTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGG                                                                              >  SRR4302540.9575196/1‑94 (MQ=60)
                  TTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTG                                                                             <  SRR4302540.9515479/94‑1 (MQ=60)
                   TAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGC                                                                            <  SRR4302540.5655612/94‑1 (MQ=60)
                   TAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGC                                                                            <  SRR4302540.8140290/94‑1 (MQ=60)
                   TAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGC                                                                            <  SRR4302540.9626113/94‑1 (MQ=60)
                   TAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGC                                                                            <  SRR4302540.5784975/94‑1 (MQ=60)
                   TAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGC                                                                            <  SRR4302540.10010299/94‑1 (MQ=60)
                    AGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCG                                                                           <  SRR4302540.1434251/94‑1 (MQ=60)
                    AGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCG                                                                           <  SRR4302540.7601858/94‑1 (MQ=60)
                     GCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGG                                                                          <  SRR4302540.5196671/94‑1 (MQ=60)
                     GCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGG                                                                          <  SRR4302540.7227873/94‑1 (MQ=60)
                       ATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCC                                                                        <  SRR4302540.155217/94‑1 (MQ=60)
                       ATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCC                                                                        >  SRR4302540.6420076/1‑94 (MQ=60)
                       ATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGCGCGGCC                                                                        >  SRR4302540.8913671/1‑94 (MQ=60)
                          ACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGC                                                                     <  SRR4302540.552632/94‑1 (MQ=60)
                           CGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCT                                                                    <  SRR4302540.8243156/94‑1 (MQ=60)
                           CGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCT                                                                    <  SRR4302540.7435897/94‑1 (MQ=60)
                            GCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTG                                                                   >  SRR4302540.8617052/1‑94 (MQ=60)
                            GCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTG                                                                   <  SRR4302540.292766/94‑1 (MQ=60)
                              AGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCA                                                                 <  SRR4302540.781823/94‑1 (MQ=60)
                              AGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCA                                                                 >  SRR4302540.5971669/1‑94 (MQ=60)
                              AGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCA                                                                 <  SRR4302540.4778453/94‑1 (MQ=60)
                              AGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCA                                                                 >  SRR4302540.5562702/1‑94 (MQ=60)
                              AGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCA                                                                 >  SRR4302540.4208647/1‑94 (MQ=60)
                              AGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCA                                                                 <  SRR4302540.1724502/94‑1 (MQ=60)
                              AGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCA                                                                 <  SRR4302540.3870232/94‑1 (MQ=60)
                               GACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCAT                                                                <  SRR4302540.1795499/94‑1 (MQ=60)
                                GCGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATT                                                               <  SRR4302540.7610870/94‑1 (MQ=60)
                                ACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATT                                                               <  SRR4302540.8720530/94‑1 (MQ=60)
                                 CGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTG                                                              <  SRR4302540.7822479/94‑1 (MQ=60)
                                 CGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTG                                                              >  SRR4302540.9786885/1‑94 (MQ=60)
                                   CTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCA                                                            <  SRR4302540.1869524/94‑1 (MQ=60)
                                    TGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCAT                                                           <  SRR4302540.7442110/94‑1 (MQ=60)
                                    TGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCAT                                                           <  SRR4302540.3160413/94‑1 (MQ=60)
                                    TGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCAT                                                           >  SRR4302540.2469559/1‑94 (MQ=60)
                                    TGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCAT                                                           >  SRR4302540.1011056/1‑94 (MQ=60)
                                     GGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATG                                                          >  SRR4302540.1706843/1‑94 (MQ=60)
                                     GGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATG                                                          <  SRR4302540.1862948/94‑1 (MQ=60)
                                       AGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGAC                                                        >  SRR4302540.2686030/1‑94 (MQ=60)
                                       AGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGAC                                                        <  SRR4302540.6094892/94‑1 (MQ=60)
                                       AGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGAC                                                        <  SRR4302540.6868778/94‑1 (MQ=60)
                                       AGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGAC                                                        <  SRR4302540.4516129/94‑1 (MQ=60)
                                       AGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGAC                                                        >  SRR4302540.4256428/1‑94 (MQ=60)
                                        GTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGatggtgaaaaagcgctaga                                                       >  SRR4302540.9325265/1‑75 (MQ=60)
                                        GTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACC                                                       >  SRR4302540.9359388/1‑94 (MQ=60)
                                        GTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACC                                                       >  SRR4302540.7064236/1‑94 (MQ=60)
                                        GTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACC                                                       >  SRR4302540.9154901/1‑94 (MQ=60)
                                        GTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACC                                                       >  SRR4302540.9225864/1‑94 (MQ=60)
                                        GTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACC                                                       >  SRR4302540.926466/1‑94 (MQ=60)
                                         gtTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGACAAAGAAAGGTGCGGCCTGCTGCATTGCATGTCCC                                                      <  SRR4302540.1730809/92‑1 (MQ=60)
                                          GTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCG                                                     >  SRR4302540.961390/1‑94 (MQ=60)
                                          GTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCG                                                     <  SRR4302540.9606099/94‑1 (MQ=60)
                                          GTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCG                                                     >  SRR4302540.7391983/1‑94 (MQ=60)
                                          GTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCG                                                     >  SRR4302540.2085802/1‑94 (MQ=60)
                                          GTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCG                                                     <  SRR4302540.856662/94‑1 (MQ=60)
                                          GTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCG                                                     <  SRR4302540.8740269/94‑1 (MQ=60)
                                           TTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGT                                                    <  SRR4302540.9105726/94‑1 (MQ=60)
                                           TTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGT                                                    <  SRR4302540.1856145/94‑1 (MQ=60)
                                            TTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTA                                                   <  SRR4302540.5199651/94‑1 (MQ=60)
                                              CGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACC                                                 <  SRR4302540.10123684/94‑1 (MQ=60)
                                              CGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACC                                                 <  SRR4302540.560306/94‑1 (MQ=60)
                                              CGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACC                                                 <  SRR4302540.312876/94‑1 (MQ=60)
                                               GACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCC                                                >  SRR4302540.7926014/1‑94 (MQ=60)
                                               GACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCC                                                >  SRR4302540.2475882/1‑94 (MQ=60)
                                                ACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCA                                               <  SRR4302540.3534784/94‑1 (MQ=60)
                                                  AGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGC                                             >  SRR4302540.3408679/1‑94 (MQ=60)
                                                   GAGATGCGCGGCACGTCGCCGTAGAGCATTAAAATCTCTTCACCATCGGCAACGAAAGGTGCTGCTTGCTGCATTGCATGACCCGTACCCAGCT                                            <  SRR4302540.5440250/94‑1 (MQ=60)
                                                   GAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCT                                            <  SRR4302540.9540679/94‑1 (MQ=60)
                                                   GAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCT                                            <  SRR4302540.9159514/94‑1 (MQ=60)
                                                   GAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCT                                            <  SRR4302540.5025191/94‑1 (MQ=60)
                                                   GAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCG                                            >  SRR4302540.362599/1‑94 (MQ=60)
                                                    AGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTG                                           <  SRR4302540.2503842/94‑1 (MQ=60)
                                                     GATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGC                                          >  SRR4302540.3792379/1‑94 (MQ=60)
                                                     GATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGC                                          >  SRR4302540.2354228/1‑94 (MQ=60)
                                                      ATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCT                                         >  SRR4302540.4541997/1‑94 (MQ=60)
                                                      ATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCT                                         >  SRR4302540.5059410/1‑94 (MQ=60)
                                                      ATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCT                                         >  SRR4302540.6830673/1‑94 (MQ=60)
                                                        CAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCT                                       >  SRR4302540.1642183/1‑94 (MQ=60)
                                                         AGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTG                                      <  SRR4302540.9562970/94‑1 (MQ=60)
                                                         AGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTG                                      <  SRR4302540.3996122/94‑1 (MQ=60)
                                                           CGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCC                                    >  SRR4302540.6388852/1‑94 (MQ=60)
                                                           CGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCC                                    >  SRR4302540.7313096/1‑94 (MQ=60)
                                                           CGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCC                                    <  SRR4302540.3887498/94‑1 (MQ=60)
                                                            GGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCT                                   <  SRR4302540.2188365/94‑1 (MQ=60)
                                                            GGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCT                                   <  SRR4302540.3031544/94‑1 (MQ=60)
                                                             GCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTG                                  <  SRR4302540.7947379/94‑1 (MQ=60)
                                                              CACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGA                                 <  SRR4302540.6477806/94‑1 (MQ=60)
                                                               ACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAA                                >  SRR4302540.4771405/1‑94 (MQ=60)
                                                               ACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAA                                >  SRR4302540.9340563/1‑94 (MQ=60)
                                                                CGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAG                               >  SRR4302540.3313824/1‑94 (MQ=60)
                                                                CGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAG                               >  SRR4302540.1382063/1‑94 (MQ=60)
                                                                 GTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGC                              >  SRR4302540.4662989/1‑94 (MQ=60)
                                                                  TCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCA                             <  SRR4302540.4544499/94‑1 (MQ=60)
                                                                   CGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCAC                            <  SRR4302540.6015307/94‑1 (MQ=60)
                                                                   CGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCAC                            <  SRR4302540.1765482/94‑1 (MQ=60)
                                                                    GCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACC                           >  SRR4302540.9448520/1‑94 (MQ=60)
                                                                     CCGTAGAGCATTAAAATGTCTTGACCATCGGCAAAGAAAGATGCGGCCTGCTGCATTGCATGACCCGTCCCCAACTGCTGTGCCTaacgcaaca                          >  SRR4302540.1815512/1‑85 (MQ=60)
                                                                     CCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCC                          >  SRR4302540.1815514/1‑94 (MQ=60)
                                                                      CGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCA                         >  SRR4302540.3830743/1‑94 (MQ=60)
                                                                       GTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAG                        >  SRR4302540.5159589/1‑94 (MQ=60)
                                                                       GTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAG                        >  SRR4302540.4279051/1‑94 (MQ=60)
                                                                         AGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTT                      >  SRR4302540.2499300/1‑94 (MQ=60)
                                                                         AGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTT                      >  SRR4302540.5902439/1‑94 (MQ=60)
                                                                         AGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTT                      >  SRR4302540.41478/1‑94 (MQ=60)
                                                                          GAGCATTAAAATGTCTTCACCATCGGCAANGAAAGNTGCNGCCNGCTGCNTNGNATGANCCGTNCCnannnnnnntnnctgcagnncnnngnna                     >  SRR4302540.174425/1‑66 (MQ=55)
                                                                            GCATTAAAATGTCTTCTCCATCGGCAAAGAGAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAG                   <  SRR4302540.5334991/94‑1 (MQ=60)
                                                                             CATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGG                  >  SRR4302540.6560727/1‑94 (MQ=60)
                                                                              ATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGT                 >  SRR4302540.1844165/1‑94 (MQ=60)
                                                                              ATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGT                 >  SRR4302540.282850/1‑94 (MQ=60)
                                                                              ATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGT                 >  SRR4302540.7527823/1‑94 (MQ=60)
                                                                               TTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGGTCTGCCTGAAGCACCCAGTTAAGGTT                >  SRR4302540.3736268/1‑94 (MQ=60)
                                                                               TTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTT                <  SRR4302540.1528469/94‑1 (MQ=60)
                                                                               TTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTT                <  SRR4302540.9240505/94‑1 (MQ=60)
                                                                               TTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTT                >  SRR4302540.3736267/1‑94 (MQ=60)
                                                                                TAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTCCCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTG               <  SRR4302540.1104351/94‑1 (MQ=60)
                                                                                TAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTG               <  SRR4302540.1104350/94‑1 (MQ=60)
                                                                                 AAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGT              >  SRR4302540.5596815/1‑94 (MQ=60)
                                                                                 AAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGT              >  SRR4302540.8436188/1‑94 (MQ=60)
                                                                                  AAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTC             >  SRR4302540.3102242/1‑94 (MQ=60)
                                                                                  AAATGTCTTCACCATCGGCAAAGAAAGGGGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTC             >  SRR4302540.8058260/1‑94 (MQ=60)
                                                                                   AATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGATCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCG            >  SRR4302540.2817929/1‑94 (MQ=60)
                                                                                   AATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCG            <  SRR4302540.9368151/94‑1 (MQ=60)
                                                                                   AATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCG            >  SRR4302540.2000868/1‑94 (MQ=60)
                                                                                    ATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGT           >  SRR4302540.4346938/1‑94 (MQ=60)
                                                                                    ATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGT           >  SRR4302540.5603086/1‑94 (MQ=60)
                                                                                    ATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGT           <  SRR4302540.689081/94‑1 (MQ=60)
                                                                                    ATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGT           >  SRR4302540.9207025/1‑94 (MQ=60)
                                                                                       TCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTT        >  SRR4302540.4865924/1‑94 (MQ=60)
                                                                                       TCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTT        <  SRR4302540.1667137/94‑1 (MQ=60)
                                                                                       TCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTT        >  SRR4302540.5388284/1‑94 (MQ=60)
                                                                                        CTTCCCCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTT       <  SRR4302540.2727971/94‑1 (MQ=60)
                                                                                        CTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTT       >  SRR4302540.6718329/1‑94 (MQ=60)
                                                                                        CTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTT       <  SRR4302540.1823159/94‑1 (MQ=60)
                                                                                         TTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTC      >  SRR4302540.3860326/1‑94 (MQ=60)
                                                                                         TTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTC      >  SRR4302540.1138571/1‑94 (MQ=60)
                                                                                         TTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTC      >  SRR4302540.2583947/1‑94 (MQ=60)
                                                                                         TTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTC      >  SRR4302540.5323790/1‑94 (MQ=60)
                                                                                         TTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTC      <  SRR4302540.327431/94‑1 (MQ=60)
                                                                                         TTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCACGCTGCTCTGCCTGACGCCCCCAGTTAcgggtgttgtcttta      >  SRR4302540.1138572/1‑79 (MQ=60)
                                                                                          TCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCA     >  SRR4302540.7248743/1‑94 (MQ=60)
                                                                                          TCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCA     >  SRR4302540.2344221/1‑94 (MQ=60)
                                                                                           CACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCAG    >  SRR4302540.735226/1‑94 (MQ=60)
                                                                                           CACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCAG    >  SRR4302540.8649462/1‑94 (MQ=60)
                                                                                           CACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCAG    <  SRR4302540.830359/94‑1 (MQ=60)
                                                                                           CACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCAG    >  SRR4302540.9839320/1‑94 (MQ=60)
                                                                                             CCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCAGCG  <  SRR4302540.870471/94‑1 (MQ=60)
                                                                                             |                                                                                             
CCAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCATCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCAGCG  >  NC_000913/3912449‑3912635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑