Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,930,568 +G intergenic (+66/‑373) kup → / → rbsD low affinity potassium transport system/RbsD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,930,5671.G99.4% 1512.5 / ‑0.1 473intergenic (+65/‑374)kup/rbsDlow affinity potassium transport system/RbsD
Reads supporting (aligned to +/- strand):  ref base . (3/0);  new base G (211/259);  total (214/259)
Fisher's exact test for biased strand distribution p-value = 9.19e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 534 total aligned reads displayed.

GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGT  >  NC_000913/3930475‑3930656
                                                                                             |                                                                                          
gcACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGtt                                                                                             <  2:5790568/93‑1 (MQ=255)
gcACCGAAGACGCGCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGtt                                                                                             <  1:4019304/93‑1 (MQ=255)
 cACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTg                                                                                           >  2:446863/1‑93 (MQ=255)
 cACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTg                                                                                           <  2:5120331/93‑1 (MQ=255)
   ccGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTggc                                                                                         <  2:3855004/93‑3 (MQ=255)
     gAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTggcga                                                                                       >  1:772219/1‑89 (MQ=255)
       aGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCgaga                                                                                     <  1:2486145/93‑1 (MQ=255)
       aGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCgaga                                                                                     >  1:3588317/1‑93 (MQ=255)
         aCGCTCCATATGTCCATAACGTCGGTCGGGTACAGATTGCACAACTGTCGCCCCCTTTCGGGCGCGTGGTGGCAAGTTATGGTTGGCGAGaaa                                                                                   <  2:2246643/93‑1 (MQ=255)
         aCGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGaaa                                                                                   <  2:10029189/93‑1 (MQ=255)
         aCGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGaaa                                                                                   <  2:9759689/93‑1 (MQ=255)
           gCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACg                                                                                 <  1:9297615/93‑1 (MQ=255)
           gCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACg                                                                                 >  1:1849986/1‑93 (MQ=255)
            cTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGc                                                                                >  2:6287953/1‑93 (MQ=255)
             tCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGcc                                                                               <  1:6734899/93‑1 (MQ=255)
             tCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGcc                                                                               <  1:9424391/93‑1 (MQ=255)
              ccATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCa                                                                              >  2:2897861/1‑93 (MQ=255)
                atatGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCaaa                                                                            <  2:9102752/93‑1 (MQ=255)
                 tatGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAAc                                                                           >  1:3748399/1‑93 (MQ=255)
                  atGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACg                                                                          <  1:6359516/93‑1 (MQ=255)
                   tGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGt                                                                         >  2:4737857/1‑93 (MQ=255)
                    gTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTa                                                                        <  2:240429/93‑1 (MQ=255)
                     tCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTag                                                                       >  2:5939675/1‑93 (MQ=255)
                     tCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGGGGTGGGAAGGTATGGTTGTGGAGCACCGCCAAACGTag                                                                       >  1:704756/1‑93 (MQ=255)
                      ccATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTaga                                                                      <  2:6661868/93‑1 (MQ=255)
                      ccATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTaga                                                                      <  2:6431424/93‑1 (MQ=255)
                       cATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTagaa                                                                     >  1:6294130/1‑93 (MQ=255)
                         tAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTagaaga                                                                   <  2:2731881/93‑1 (MQ=255)
                           aCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGaagaag                                                                 >  2:3411347/1‑93 (MQ=255)
                             gtccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGtt                                                               <  2:8881401/93‑1 (MQ=255)
                              tccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGttt                                                              <  1:555358/93‑1 (MQ=255)
                                cgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTc                                                            <  2:9814938/93‑1 (MQ=255)
                                 gtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTcc                                                           >  1:7842971/1‑93 (MQ=255)
                                 gtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTcc                                                           <  2:4262903/93‑1 (MQ=255)
                                 gtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTcc                                                           >  2:6920140/1‑93 (MQ=255)
                                   cGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAc                                                         <  1:9035882/93‑1 (MQ=255)
                                    gggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAcc                                                        <  2:3194586/93‑1 (MQ=255)
                                    gggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAcc                                                        <  1:8138250/93‑1 (MQ=255)
                                    gggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAcc                                                        <  2:1883617/93‑1 (MQ=255)
                                     ggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCg                                                       >  1:7486192/1‑93 (MQ=255)
                                     ggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCg                                                       <  2:3614847/93‑1 (MQ=255)
                                     ggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAAAGCCAAACGTAGAAGAAGTTTTCCACCg                                                       >  1:3878256/1‑93 (MQ=255)
                                      gTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGc                                                      <  1:6455564/93‑1 (MQ=255)
                                       tACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCt                                                     >  1:5843300/1‑93 (MQ=255)
                                         cAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGc                                                   >  2:6131899/1‑93 (MQ=255)
                                         cAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGc                                                   <  2:1262877/93‑1 (MQ=255)
                                          aGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCg                                                  >  1:9209253/1‑93 (MQ=255)
                                           gATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCgg                                                 >  2:8433041/1‑93 (MQ=255)
                                            aTTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGt                                                >  1:8676671/1‑93 (MQ=255)
                                             ttGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTc                                               <  1:2081448/93‑1 (MQ=255)
                                             ttGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTc                                               <  1:1224650/93‑1 (MQ=255)
                                             atggacaacCGCCGCCCTCGTTCTGGCGCGGGGTGGCAAGTTATGGTTGGCGAGAAACTCCAAACGTAGTAGAAGTTTTCCACCGCTGCGGTc                                               <  2:7457582/89‑1 (MQ=255)
                                              tGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCt                                              <  2:823731/93‑1 (MQ=255)
                                               gAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTg                                             <  2:7924921/93‑1 (MQ=255)
                                                aacaacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTgg                                            >  1:1008531/1‑93 (MQ=255)
                                                  caacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGaa                                          <  2:9624429/93‑1 (MQ=255)
                                                    acTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAgg                                        >  2:1207747/1‑93 (MQ=255)
                                                     cTGTCGCCCACTTTCTGGCTCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGa                                       <  1:9783108/93‑1 (MQ=255)
                                                     cTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGa                                       <  1:1286835/93‑1 (MQ=255)
                                                      tGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAt                                      <  1:5004464/93‑1 (MQ=255)
                                                       gTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAtt                                     <  2:165395/93‑1 (MQ=255)
                                                       gTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAtt                                     >  2:7344183/1‑93 (MQ=255)
                                                        tCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTa                                    >  1:2779624/1‑93 (MQ=255)
                                                        tCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTa                                    <  1:3182421/93‑1 (MQ=255)
                                                        tCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTa                                    <  2:65120/93‑1 (MQ=255)
                                                         cGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTaa                                   <  1:4387604/93‑1 (MQ=255)
                                                          gCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAg                                  <  1:2751701/93‑1 (MQ=255)
                                                           cccACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGt                                 >  2:267389/1‑93 (MQ=255)
                                                           cccACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGt                                 >  1:1069124/1‑93 (MQ=255)
                                                            ccACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGtt                                >  1:6951106/1‑93 (MQ=255)
                                                             cACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTg                               >  2:9735536/1‑93 (MQ=255)
                                                             cACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTg                               >  1:4636877/1‑93 (MQ=255)
                                                              aCTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGc                              >  2:198653/1‑93 (MQ=255)
                                                                tttCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCg                            <  1:1472169/93‑1 (MQ=255)
                                                                tttCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCg                            >  2:5334099/1‑93 (MQ=255)
                                                                tttCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCg                            >  1:3454337/1‑93 (MQ=255)
                                                                 ttCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCgg                           >  2:495475/1‑93 (MQ=255)
                                                                 ttCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCgg                           >  1:4878227/1‑93 (MQ=255)
                                                                  tCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGCAGGATTAAGTTGCCGga                          >  1:72296/1‑93 (MQ=255)
                                                                    tGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatg                        <  2:8040884/93‑1 (MQ=255)
                                                                     ggCGCGTGGTGGCAAGTTATGGTTGGCTAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatga                       <  2:170512/93‑1 (MQ=255)
                                                                      gcgcGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatgat                      <  2:1528874/93‑1 (MQ=255)
                                                                          gtggtgGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGaa                  >  2:1124160/1‑93 (MQ=255)
                                                                          gtggtgGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGaa                  >  2:1418384/1‑93 (MQ=255)
                                                                           tggtggCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGaaa                 >  2:400161/1‑93 (MQ=255)
                                                                           tggtggCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGaaa                 >  1:667484/1‑93 (MQ=255)
                                                                            ggtggCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAAc                <  1:1381779/93‑1 (MQ=255)
                                                                                 cAAGTTATGGTTGGCGAGAAACGCCAAACGTAGCAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAAcctcct           <  1:9678585/93‑1 (MQ=255)
                                                                                 cAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAAcctcct           <  2:371962/93‑1 (MQ=255)
                                                                                  aaGTTATGGTTGGCGAGAAACGCCAAGCGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCctt          <  1:521906/93‑1 (MQ=255)
                                                                                  aaGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCctt          >  2:7800989/1‑93 (MQ=255)
                                                                                   aGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCcttt         >  2:8765036/1‑92 (MQ=255)
                                                                                   aGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCcttc         >  2:7117798/1‑93 (MQ=255)
                                                                                    gTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCcttct        <  1:8293463/93‑1 (MQ=255)
                                                                                     ttATGGTTGGCGAGAAACCCCAAACGTAGAAGAAGGTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCcttctt       >  2:8549409/1‑93 (MQ=255)
                                                                                      tATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCttt      >  1:6568457/1‑93 (MQ=255)
                                                                                       aTGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCCCCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGACCCCTCCTTCTTTa     <  2:7265184/93‑1 (MQ=255)
                                                                                       aTGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTa     <  1:9137259/93‑1 (MQ=255)
                                                                                       aTGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTa     >  2:9358491/1‑93 (MQ=255)
                                                                                        tGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAt    >  1:8478861/1‑93 (MQ=255)
                                                                                             |                                                                                          
GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGT  >  NC_000913/3930475‑3930656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 276 total aligned reads displayed.
GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCAT  >  NC_000913/3930475‑3930661
                                                                                               |                                                                                              
GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGNCNCGTGGTGGCAAGTNATGGNNN                                                                                                >  SRR4302540.7581091/1‑94 (MQ=60)
GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTG                                                                                                >  SRR4302540.3827405/1‑94 (MQ=60)
GCACCGAAGACGCGCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTG                                                                                                <  SRR4302540.4062602/94‑1 (MQ=60)
 CACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGG                                                                                              >  SRR4302540.474908/1‑94 (MQ=60)
 CACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGG                                                                                              <  SRR4302540.6069768/94‑1 (MQ=60)
 CACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGG                                                                                              <  SRR4302540.9702612/94‑1 (MQ=60)
 CACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGG                                                                                              >  SRR4302540.3261196/1‑94 (MQ=60)
 CACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGGGGCAAGTTATGGTTGG                                                                                              >  SRR4302540.1045193/1‑94 (MQ=60)
  ACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGgc                                                                                              <  SRR4302540.6809254/94‑3 (MQ=60)
  ACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTATGGCGCCTGGGGGCAAGTTATGGTTGgc                                                                                              >  SRR4302540.4123493/1‑92 (MQ=60)
   CCGAAGACGCTCCATATGTCCATAACGTGCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGgcg                                                                                             <  SRR4302540.6369890/94‑4 (MQ=60)
   CCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGgcg                                                                                             <  SRR4302540.7122572/94‑4 (MQ=60)
   CCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGgcg                                                                                             >  SRR4302540.376229/1‑91 (MQ=60)
   CCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGgcg                                                                                             >  SRR4302540.7585214/1‑91 (MQ=60)
   CCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGgcg                                                                                             <  SRR4302540.7617181/94‑4 (MQ=60)
    CGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGA                                                                                            >  SRR4302540.780434/1‑94 (MQ=60)
    CGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGA                                                                                            >  SRR4302540.1226538/1‑94 (MQ=60)
      AAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGA                                                                                          <  SRR4302540.8583296/94‑1 (MQ=60)
      AAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGA                                                                                          >  SRR4302540.3627509/1‑94 (MQ=60)
       AGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAA                                                                                         <  SRR4302540.2512926/94‑1 (MQ=60)
        GACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAA                                                                                        <  SRR4302540.6303816/94‑1 (MQ=60)
         ACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAAC                                                                                       <  SRR4302540.6755084/94‑1 (MQ=60)
         ACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAAC                                                                                       <  SRR4302540.4004676/94‑1 (MQ=60)
          CGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACG                                                                                      >  SRR4302540.1870275/1‑94 (MQ=60)
           GCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGC                                                                                     >  SRR4302540.8267766/1‑94 (MQ=60)
           GCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGC                                                                                     <  SRR4302540.9408690/94‑1 (MQ=60)
           GCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGC                                                                                     >  SRR4302540.1433749/1‑94 (MQ=60)
            CTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCC                                                                                    <  SRR4302540.1945375/94‑1 (MQ=60)
             TCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCCAGTTATGGTTGGCGGGAAACGCCA                                                                                   >  SRR4302540.5059810/1‑94 (MQ=60)
             TCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCA                                                                                   <  SRR4302540.9536381/94‑1 (MQ=60)
             TCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCA                                                                                   <  SRR4302540.733675/94‑1 (MQ=60)
             TCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCA                                                                                   <  SRR4302540.6809277/94‑1 (MQ=60)
              CCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAA                                                                                  <  SRR4302540.8924558/94‑1 (MQ=60)
              CCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAA                                                                                  <  SRR4302540.2353750/94‑1 (MQ=60)
              CCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAA                                                                                  >  SRR4302540.3809514/1‑94 (MQ=60)
               CATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAA                                                                                 >  SRR4302540.3950165/1‑94 (MQ=60)
               CATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAA                                                                                 <  SRR4302540.9300013/94‑1 (MQ=60)
                ATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAAC                                                                                >  SRR4302540.3789297/1‑94 (MQ=60)
                ATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAAC                                                                                <  SRR4302540.6950504/94‑1 (MQ=60)
                 TATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACG                                                                               <  SRR4302540.6574658/94‑1 (MQ=60)
                  ATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGT                                                                              >  SRR4302540.4871045/1‑94 (MQ=60)
                  ATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGT                                                                              >  SRR4302540.8673010/1‑94 (MQ=60)
                  ATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGT                                                                              <  SRR4302540.6430334/94‑1 (MQ=60)
                  ATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGT                                                                              <  SRR4302540.6430333/94‑1 (MQ=60)
                  ATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGA                                                                              >  SRR4302540.4738324/1‑94 (MQ=60)
                  ATGTCCATAACGTCCGGCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGT                                                                              >  SRR4302540.6389301/1‑94 (MQ=60)
                   TGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTA                                                                             >  SRR4302540.2541907/1‑94 (MQ=60)
                    GTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAG                                                                            >  SRR4302540.712321/1‑94 (MQ=60)
                    GTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGGGGTGGGAAGGTATGGTTGTGGAGCACCGCCAAACGTAG                                                                            >  SRR4302540.712322/1‑94 (MQ=60)
                     TCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGA                                                                           <  SRR4302540.6553013/94‑1 (MQ=60)
                     TCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGA                                                                           <  SRR4302540.9580918/94‑1 (MQ=60)
                      CCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAA                                                                          >  SRR4302540.2804504/1‑94 (MQ=60)
                        ATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGA                                                                        >  SRR4302540.6506270/1‑94 (MQ=60)
                        ATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGA                                                                        >  SRR4302540.7614838/1‑94 (MQ=60)
                          AACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAG                                                                      >  SRR4302540.7255103/1‑94 (MQ=60)
                           ACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGT                                                                     <  SRR4302540.1956376/94‑1 (MQ=60)
                           ACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGT                                                                     <  SRR4302540.497582/94‑1 (MQ=60)
                            CGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTT                                                                    >  SRR4302540.5831352/1‑94 (MQ=60)
                            CGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTT                                                                    <  SRR4302540.469514/94‑1 (MQ=60)
                             GTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTT                                                                   <  SRR4302540.9433236/94‑1 (MQ=60)
                             GTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTT                                                                   <  SRR4302540.1390534/94‑1 (MQ=60)
                             GTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTT                                                                   <  SRR4302540.5119720/94‑1 (MQ=60)
                             GTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTT                                                                   <  SRR4302540.9806040/94‑1 (MQ=60)
                             GTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTGTCTGGCGCGTGGTGGCAAGGTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTT                                                                   <  SRR4302540.5119719/94‑1 (MQ=60)
                             GTCCGTCAGGTGCAGATTGAACAACTCGCGCCCACGTTGTGGCGCGTTGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTG                                                                   <  SRR4302540.1390533/94‑1 (MQ=55)
                              TCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTT                                                                  <  SRR4302540.561417/94‑1 (MQ=60)
                               CCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTC                                                                 >  SRR4302540.408495/1‑94 (MQ=60)
                               CCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGCGGCCCGTTATGGTTGGCGAGAAACGCCAACCGGAGAAGAAGatgtc                                                                 >  SRR4302540.4055394/1‑89 (MQ=60)
                                CGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCC                                                                <  SRR4302540.7717324/94‑1 (MQ=60)
                                CGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCC                                                                <  SRR4302540.92575/94‑1 (MQ=60)
                                CGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCC                                                                >  SRR4302540.9320979/1‑94 (MQ=60)
                                 GTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCA                                                               <  SRR4302540.130651/94‑1 (MQ=60)
                                 GTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCA                                                               >  SRR4302540.5737880/1‑94 (MQ=60)
                                  gtgggttgagggTGAACAACTGTCGCCCACTTTGTGGGGCGGGGGGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAC                                                              <  SRR4302540.3573503/82‑1 (MQ=60)
                                  TCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAC                                                              <  SRR4302540.1294331/94‑1 (MQ=60)
                                  TCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAC                                                              <  SRR4302540.8056781/94‑1 (MQ=60)
                                  TCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAC                                                              <  SRR4302540.7961958/94‑1 (MQ=60)
                                  GCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAC                                                              <  SRR4302540.3573504/94‑1 (MQ=60)
                                   CGGGTACAGATTGAACAACTGTCGCGCAGTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCCAACGTAGAAGAAGTTTTCCACC                                                             <  SRR4302540.1779366/94‑1 (MQ=60)
                                   CGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACC                                                             <  SRR4302540.6581139/94‑1 (MQ=60)
                                   CGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACC                                                             <  SRR4302540.8562364/94‑1 (MQ=60)
                                   CGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACC                                                             <  SRR4302540.9144322/94‑1 (MQ=60)
                                    GGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCG                                                            <  SRR4302540.840647/94‑1 (MQ=60)
                                    GGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCG                                                            <  SRR4302540.6659495/94‑1 (MQ=60)
                                    GGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAAAGCCAAACGTAGAAGAAGTTTTCCACCG                                                            >  SRR4302540.3920404/1‑94 (MQ=60)
                                     GGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGGTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGC                                                           >  SRR4302540.9257850/1‑94 (MQ=60)
                                     GGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGC                                                           >  SRR4302540.8993670/1‑94 (MQ=60)
                                      GTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACTTAGAAGAAGTTTTCCACCGCT                                                          <  SRR4302540.2802849/94‑1 (MQ=60)
                                      GTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCT                                                          >  SRR4302540.5907923/1‑94 (MQ=60)
                                      GTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCT                                                          <  SRR4302540.2802848/94‑1 (MQ=60)
                                       TACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTG                                                         >  SRR4302540.339688/1‑94 (MQ=60)
                                       TACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTG                                                         >  SRR4302540.1193191/1‑94 (MQ=60)
                                        ACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGC                                                        >  SRR4302540.9200947/1‑94 (MQ=60)
                                         CAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCG                                                       <  SRR4302540.4665863/94‑1 (MQ=60)
                                         CAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCG                                                       <  SRR4302540.1169580/94‑1 (MQ=60)
                                         CAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCG                                                       >  SRR4302540.9319753/1‑94 (MQ=60)
                                         CAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCG                                                       >  SRR4302540.3313719/1‑94 (MQ=60)
                                          AGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGNAGAAGTTTTCCACCGCTGCGG                                                      >  SRR4302540.1283203/1‑94 (MQ=60)
                                           GATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGT                                                     >  SRR4302540.140745/1‑94 (MQ=60)
                                           GATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGT                                                     >  SRR4302540.8777444/1‑94 (MQ=60)
                                           GATTAAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAACCGTAGAAGAAGTTTTCCACCGCTGCGGC                                                     >  SRR4302540.8777443/1‑94 (MQ=60)
                                            ATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTC                                                    >  SRR4302540.4958064/1‑94 (MQ=60)
                                             TTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCT                                                   <  SRR4302540.6758459/94‑1 (MQ=60)
                                             TTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCT                                                   <  SRR4302540.2103813/94‑1 (MQ=60)
                                              TGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTG                                                  >  SRR4302540.3575933/1‑94 (MQ=60)
                                               GAGCAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGG                                                 <  SRR4302540.9797350/94‑1 (MQ=60)
                                               GAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGG                                                 <  SRR4302540.172020/94‑1 (MQ=60)
                                               GAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGG                                                 >  SRR4302540.1018762/1‑94 (MQ=60)
                                                AACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGA                                                >  SRR4302540.2081325/1‑94 (MQ=60)
                                                 ACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAA                                               <  SRR4302540.9735034/94‑1 (MQ=60)
                                                  CAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAG                                              <  SRR4302540.3631013/94‑1 (MQ=60)
                                                  CAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAG                                              <  SRR4302540.822739/94‑1 (MQ=60)
                                                    ACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGA                                            <  SRR4302540.7289761/94‑1 (MQ=60)
                                                    ACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGGTATGGGTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCCATGCGGTCTGGAAGGA                                            >  SRR4302540.7582081/1‑94 (MQ=60)
                                                     CTGTCGCCCACTTTCTGGCTCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAT                                           <  SRR4302540.9897754/94‑1 (MQ=60)
                                                     CTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCCAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAT                                           >  SRR4302540.1284575/1‑94 (MQ=60)
                                                     CTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAT                                           >  SRR4302540.1284885/1‑94 (MQ=60)
                                                     CTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAT                                           <  SRR4302540.1300106/94‑1 (MQ=60)
                                                     CTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAT                                           >  SRR4302540.5335144/1‑94 (MQ=60)
                                                     CTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAT                                           <  SRR4302540.6521485/94‑1 (MQ=60)
                                                      TGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATT                                          >  SRR4302540.5359686/1‑94 (MQ=60)
                                                      TGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATT                                          <  SRR4302540.5058665/94‑1 (MQ=60)
                                                      TGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATT                                          >  SRR4302540.689004/1‑94 (MQ=60)
                                                       GTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTA                                         <  SRR4302540.7311566/94‑1 (MQ=60)
                                                        TCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAA                                        <  SRR4302540.3217000/94‑1 (MQ=60)
                                                         CGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAG                                       <  SRR4302540.4435231/94‑1 (MQ=60)
                                                          GCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGTAGGATTACGT                                      >  SRR4302540.8233652/1‑94 (MQ=60)
                                                          GCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGT                                      >  SRR4302540.7878590/1‑94 (MQ=60)
                                                          GCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGT                                      <  SRR4302540.2781438/94‑1 (MQ=60)
                                                          GCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGT                                      <  SRR4302540.8102226/94‑1 (MQ=60)
                                                          GCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGT                                      >  SRR4302540.8646647/1‑94 (MQ=60)
                                                          GCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGT                                      >  SRR4302540.1080019/1‑94 (MQ=60)
                                                           CCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTT                                     <  SRR4302540.7299074/94‑1 (MQ=60)
                                                           CCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTT                                     >  SRR4302540.7028445/1‑94 (MQ=60)
                                                           CCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTT                                     >  SRR4302540.9886198/1‑94 (MQ=60)
                                                            CCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTG                                    >  SRR4302540.4686523/1‑94 (MQ=60)
                                                            CCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTG                                    >  SRR4302540.4686521/1‑94 (MQ=60)
                                                            CCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTG                                    >  SRR4302540.1617703/1‑94 (MQ=60)
                                                             CACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCTGTCTGGAAGGATTAAGTTGC                                   >  SRR4302540.7034386/1‑94 (MQ=60)
                                                               CTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGGGAAACGCCAAACGTCGAAGAAGgtttatccagcgagggcctggaaggattaagttgccg                                 >  SRR4302540.3491926/1‑57 (MQ=51)
                                                               CTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCG                                 >  SRR4302540.3491927/1‑94 (MQ=60)
                                                               CTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCG                                 >  SRR4302540.2669073/1‑94 (MQ=60)
                                                               CTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCG                                 <  SRR4302540.2908206/94‑1 (MQ=60)
                                                               CTTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGATTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCG                                 >  SRR4302540.2987321/1‑94 (MQ=60)
                                                                TTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGG                                >  SRR4302540.5845275/1‑94 (MQ=60)
                                                                TTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGG                                <  SRR4302540.1488262/94‑1 (MQ=60)
                                                                TTTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAACGCTGCGGTCTGGAAGGATTAAGTTGCCGG                                >  SRR4302540.4930602/1‑94 (MQ=60)
                                                                 TTCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGCTTACGTTGCCGGA                               >  SRR4302540.917540/1‑94 (MQ=60)
                                                                  TCTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGAT                              <  SRR4302540.6625494/94‑1 (MQ=60)
                                                                   CTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATG                             >  SRR4302540.9455923/1‑94 (MQ=60)
                                                                   CTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATG                             <  SRR4302540.8205126/94‑1 (MQ=60)
                                                                   CTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATG                             >  SRR4302540.7880592/1‑94 (MQ=60)
                                                                   CTGGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATG                             >  SRR4302540.6197549/1‑94 (MQ=60)
                                                                     GGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGAT                           <  SRR4302540.7467798/94‑1 (MQ=60)
                                                                     GGCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGAT                           <  SRR4302540.1078796/94‑1 (MQ=60)
                                                                      GCGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATG                          <  SRR4302540.2469538/94‑1 (MQ=60)
                                                                       CGCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGG                         <  SRR4302540.3768793/94‑1 (MQ=60)
                                                                        GCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGA                        >  SRR4302540.3816721/1‑94 (MQ=60)
                                                                        GCGTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGA                        <  SRR4302540.2518441/94‑1 (MQ=60)
                                                                          GTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAA                      >  SRR4302540.674639/1‑94 (MQ=60)
                                                                          GTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAA                      >  SRR4302540.7919967/1‑94 (MQ=60)
                                                                          GTGGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAA                      >  SRR4302540.2756610/1‑94 (MQ=60)
                                                                            GGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACC                    <  SRR4302540.9377204/94‑1 (MQ=60)
                                                                            GGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACC                    >  SRR4302540.6694537/1‑94 (MQ=60)
                                                                            GGTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACC                    >  SRR4302540.6694538/1‑94 (MQ=60)
                                                                             GTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCT                   <  SRR4302540.7418569/94‑1 (MQ=60)
                                                                             GTGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCT                   <  SRR4302540.9541511/94‑1 (MQ=60)
                                                                              TGGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTC                  <  SRR4302540.6954719/94‑1 (MQ=60)
                                                                               GGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCC                 <  SRR4302540.595554/94‑1 (MQ=60)
                                                                               GGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCC                 >  SRR4302540.1425267/1‑94 (MQ=60)
                                                                               GGCAAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCC                 >  SRR4302540.9888696/1‑94 (MQ=60)
                                                                                  AAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTC              >  SRR4302540.9197139/1‑94 (MQ=60)
                                                                                  AAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTC              <  SRR4302540.9908239/94‑1 (MQ=60)
                                                                                  AAGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTC              >  SRR4302540.5115612/1‑94 (MQ=60)
                                                                                   AGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCT             <  SRR4302540.8122236/94‑1 (MQ=60)
                                                                                   AGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCT             <  SRR4302540.990804/94‑1 (MQ=60)
                                                                                   AGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCT             >  SRR4302540.4287271/1‑94 (MQ=60)
                                                                                   AGTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCT             <  SRR4302540.4514268/94‑1 (MQ=60)
                                                                                    GTTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTT            <  SRR4302540.8389769/94‑1 (MQ=60)
                                                                                     TTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTT           <  SRR4302540.3124057/94‑1 (MQ=60)
                                                                                     TTATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTCCCGGATGATGGAAACCTCCTTCTTT           <  SRR4302540.8545246/94‑1 (MQ=60)
                                                                                      TATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTA          <  SRR4302540.1022190/94‑1 (MQ=60)
                                                                                      TATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTA          <  SRR4302540.402960/94‑1 (MQ=60)
                                                                                       ATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAT         >  SRR4302540.8577342/1‑94 (MQ=60)
                                                                                       ATGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAT         <  SRR4302540.9247055/94‑1 (MQ=60)
                                                                                        TGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATG        <  SRR4302540.5321347/94‑1 (MQ=60)
                                                                                        TGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATG        <  SRR4302540.6508072/94‑1 (MQ=60)
                                                                                        TGGTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATG        <  SRR4302540.9348093/94‑1 (MQ=60)
                                                                                           GTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTC      >  SRR4302540.6368899/1‑94 (MQ=60)
                                                                                           GTTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTC      >  SRR4302540.7526841/1‑94 (MQ=60)
                                                                                            ttgGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGTGGAGGGAAACGTCCTTCTTTTGGTCG     >  SRR4302540.8927769/4‑94 (MQ=60)
                                                                                            TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGC    >  SRR4302540.2138258/1‑94 (MQ=60)
                                                                                            TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGC    >  SRR4302540.2138257/1‑94 (MQ=60)
                                                                                            TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGC    >  SRR4302540.2138256/1‑94 (MQ=60)
                                                                                             GGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCA   <  SRR4302540.5880063/94‑1 (MQ=60)
                                                                                             GGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCA   <  SRR4302540.3522777/94‑1 (MQ=60)
                                                                                               GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCGT  <  SRR4302540.1406222/94‑1 (MQ=60)
                                                                                               GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCAT  <  SRR4302540.9758692/94‑1 (MQ=60)
                                                                                               GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCAT  <  SRR4302540.6574578/94‑1 (MQ=60)
                                                                                               GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCAT  <  SRR4302540.8842348/94‑1 (MQ=60)
                                                                                               |                                                                                              
GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGTTGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCAT  >  NC_000913/3930475‑3930661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: