Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,542,643 Δ1 bp intergenic (+46/‑22) b4316 → / → fimD Pil/FimD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,542,6400G.99.4% 2143.5 / 3.5 477intergenic (+43/‑25)b4316/fimDPil/FimD
Reads supporting (aligned to +/- strand):  ref base G (3/0);  new base . (226/247);  total (229/248)
Fisher's exact test for biased strand distribution p-value = 1.11e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 519 total aligned reads displayed.

TAAATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATC  >  NC_000913/4542548‑4542728
                                                                                            |                                                                                        
tAAATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCg                                                                                          <  2:9777015/93‑1 (MQ=255)
 aaaTGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCgg                                                                                         >  1:1441082/1‑93 (MQ=255)
  aaTGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCggg                                                                                        <  1:4838538/93‑1 (MQ=255)
    tGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCgggtg                                                                                      >  1:9656968/1‑91 (MQ=255)
     gATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCgggtga                                                                                     >  1:9841354/1‑90 (MQ=255)
     gATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCgggtga                                                                                     >  2:6780658/1‑90 (MQ=255)
      aTTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCgggtgat                                                                                    >  1:9322504/1‑89 (MQ=255)
       ttATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAGAAAGAATTGACTGCC‑GGGTGAtt                                                                                  >  2:7223509/1‑93 (MQ=255)
       ttATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGAtt                                                                                  <  1:4508653/93‑1 (MQ=255)
       ttATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGAtt                                                                                  >  1:1713264/1‑93 (MQ=255)
        tATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGAttt                                                                                 <  2:4014882/93‑1 (MQ=255)
         aTGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGAtttt                                                                                >  1:3507377/1‑93 (MQ=255)
          tGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTa                                                                               <  1:63900/93‑1 (MQ=255)
           ggCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTaa                                                                              >  1:2871020/1‑93 (MQ=255)
           ggCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTaa                                                                              >  1:3364890/1‑93 (MQ=255)
             cgcACTTGCCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGc                                                                            <  2:4528134/93‑1 (MQ=255)
              gcACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGcc                                                                           <  1:300358/93‑1 (MQ=255)
                 cTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCgga                                                                        <  1:7369503/93‑1 (MQ=255)
                 cTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCgga                                                                        <  2:359155/93‑1 (MQ=255)
                 cTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCgga                                                                        >  2:6083399/1‑93 (MQ=255)
                 cTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCgga                                                                        >  1:10025817/1‑93 (MQ=255)
                 cTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCgga                                                                        >  2:5110409/1‑93 (MQ=255)
                  ttACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCggag                                                                       >  2:5263416/1‑93 (MQ=255)
                    aCCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCggagga                                                                     <  2:3398078/93‑1 (MQ=255)
                     cctccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGaa                                                                    <  2:4600180/90‑1 (MQ=255)
                     cccccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGaa                                                                    >  1:1849500/1‑93 (MQ=255)
                      ccccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGaat                                                                   <  2:8615948/93‑1 (MQ=255)
                        ccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGaataa                                                                 <  2:922719/93‑1 (MQ=255)
                        ccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGaataa                                                                 >  1:3786293/1‑93 (MQ=255)
                        ccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGaataa                                                                 <  2:8099927/93‑1 (MQ=255)
                          aaaaTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATg                                                               >  1:6148463/1‑93 (MQ=255)
                           aaaTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGt                                                              <  1:8512137/93‑1 (MQ=255)
                           aaaTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGt                                                              >  1:458231/1‑93 (MQ=255)
                           aaaTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGt                                                              <  1:9515537/93‑1 (MQ=255)
                            aaTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTc                                                             >  1:5224010/1‑93 (MQ=255)
                            aaTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTc                                                             <  2:431023/93‑1 (MQ=255)
                            aaTGACGGGCGTAATGGAATAACGCAGGGGGAATGTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTc                                                             <  2:1716562/93‑1 (MQ=255)
                             aTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCa                                                            <  2:6503692/93‑1 (MQ=255)
                             aTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCa                                                            >  2:7561380/1‑93 (MQ=255)
                             aTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCa                                                            <  1:2639246/93‑1 (MQ=255)
                                 cGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATc                                                        <  2:4643480/93‑1 (MQ=255)
                                 cGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATc                                                        >  2:5988975/1‑93 (MQ=255)
                                   ggCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTg                                                      >  2:1588936/1‑93 (MQ=255)
                                   ggCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTg                                                      >  2:5823330/1‑93 (MQ=255)
                                   ggCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTg                                                      >  1:2157558/1‑93 (MQ=255)
                                    gCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGa                                                     >  1:9264304/1‑93 (MQ=255)
                                    gCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGa                                                     <  1:4072434/93‑1 (MQ=255)
                                      gTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAAt                                                   <  2:8757664/93‑1 (MQ=255)
                                      gTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAAt                                                   <  1:8174167/93‑1 (MQ=255)
                                      gTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAAt                                                   >  2:1867338/1‑93 (MQ=255)
                                       tAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAAtt                                                  >  1:2319118/1‑93 (MQ=255)
                                       tAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAAtt                                                  >  2:2512899/1‑93 (MQ=255)
                                         aTGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTa                                                >  1:7174180/1‑93 (MQ=255)
                                          tGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTaa                                               >  1:5401327/1‑93 (MQ=255)
                                          tGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTaa                                               >  1:5513715/1‑93 (MQ=255)
                                                aaCGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACttt                                         <  1:122693/93‑1 (MQ=255)
                                                 aCGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTa                                        >  1:4130498/1‑93 (MQ=255)
                                                  cGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTAc                                       <  1:6809113/93‑1 (MQ=255)
                                                   gCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTAcc                                      >  1:6732029/1‑93 (MQ=255)
                                                      gggggAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGG‑GATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGc                                   >  2:2783800/1‑93 (MQ=255)
                                                      gggggAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGc                                   >  1:3191769/1‑93 (MQ=255)
                                                      gggggAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGc                                   >  2:7137005/1‑93 (MQ=255)
                                                        ggtaaTTTTTCGCATGAATAAAAAGAATTGACTGCC‑GGGTGATTTGAAGCCGGATGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGa                                 <  2:3288073/90‑1 (MQ=255)
                                                         ggAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGaa                                >  1:3083886/1‑93 (MQ=255)
                                                         ggAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGaa                                >  2:4710821/1‑93 (MQ=255)
                                                          gAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGaaa                               <  2:8908962/93‑1 (MQ=255)
                                                          gAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGaaa                               >  1:2505348/1‑93 (MQ=255)
                                                          gAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGaaa                               <  1:5819038/93‑1 (MQ=255)
                                                           aaTTTTTGGCCTGAATAAAAAGAATTGACTGCCGGGG‑GATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAac                              >  2:1051362/1‑93 (MQ=255)
                                                            aTTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAaca                             >  1:8774169/1‑93 (MQ=255)
                                                              ttttCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAacaca                           <  1:2266411/93‑1 (MQ=255)
                                                                ttCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAAcacaca                         <  2:9110289/93‑1 (MQ=255)
                                                                 tCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACaa                        <  2:3156765/93‑1 (MQ=255)
                                                                  cGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAAt                       >  2:1233607/1‑93 (MQ=255)
                                                                   gCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATg                      >  2:4839759/1‑93 (MQ=255)
                                                                     cTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTGATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCt                    <  1:4985867/93‑1 (MQ=255)
                                                                     cTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCt                    <  1:9120418/93‑1 (MQ=255)
                                                                     cTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCt                    <  2:3011539/93‑1 (MQ=255)
                                                                     cTGAATAAAAAGAATTGACTGCC‑CGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCt                    <  2:5517068/93‑1 (MQ=255)
                                                                      tGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCtt                   >  1:2048787/1‑93 (MQ=255)
                                                                      tGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCtt                   >  2:6333654/1‑93 (MQ=255)
                                                                       gAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTg                  >  2:9315589/1‑93 (MQ=255)
                                                                        aaTAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGc                 <  1:7597183/93‑1 (MQ=255)
                                                                         aTAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCa                <  1:694814/93‑1 (MQ=255)
                                                                          tAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCat               >  1:5266656/1‑93 (MQ=255)
                                                                          tAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCat               <  2:5012050/93‑1 (MQ=255)
                                                                          tAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCat               >  1:5700666/1‑93 (MQ=255)
                                                                           aaaaaGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCata              <  2:6880529/93‑1 (MQ=255)
                                                                           aaaaaGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCata              <  2:7806193/93‑1 (MQ=255)
                                                                           aaaaaGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCata              <  1:7857978/93‑1 (MQ=255)
                                                                            aaaaGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCatat             >  2:3919927/1‑93 (MQ=255)
                                                                            aaaaGAAGTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCatat             <  1:1632934/93‑1 (MQ=255)
                                                                             aaaGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATAtt            <  2:9625704/93‑1 (MQ=255)
                                                                              aaGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTc           <  2:9375214/93‑1 (MQ=255)
                                                                                gAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGt         <  2:7371884/93‑1 (MQ=255)
                                                                                gAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGt         >  1:7704796/1‑93 (MQ=255)
                                                                                  aTTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTaa       >  1:5325820/1‑93 (MQ=255)
                                                                                   ttGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAg      <  2:377395/93‑1 (MQ=255)
                                                                                    tGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGc     <  2:2268872/93‑1 (MQ=255)
                                                                                      aCTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCAt   <  2:414610/93‑1 (MQ=255)
                                                                                            |                                                                                        
TAAATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATC  >  NC_000913/4542548‑4542728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 283 total aligned reads displayed.
AATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGGCT  >  NC_000913/4542550‑4542736
                                                                                             |                                                                                             
AATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGT                                                                                               <  SRR4302540.4890364/94‑1 (MQ=60)
AATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGG                                                                                               >  SRR4302540.6719368/1‑94 (MQ=60)
AATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGG                                                                                               >  SRR4302540.9012117/1‑94 (MQ=60)
  TGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGA                                                                                            >  SRR4302540.9956407/1‑94 (MQ=60)
  TGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGA                                                                                            >  SRR4302540.5466328/1‑94 (MQ=60)
  TGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGA                                                                                            >  SRR4302540.7759695/1‑94 (MQ=60)
   GATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGAT                                                                                           >  SRR4302540.5998123/1‑94 (MQ=60)
   GATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGAT                                                                                           >  SRR4302540.9433722/1‑94 (MQ=60)
    ATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATT                                                                                          >  SRR4302540.1051452/1‑94 (MQ=60)
    ATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATT                                                                                          >  SRR4302540.172239/1‑94 (MQ=60)
    ATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATT                                                                                          <  SRR4302540.5365661/94‑1 (MQ=60)
     TTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTT                                                                                         >  SRR4302540.1199487/1‑94 (MQ=60)
      TATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTT                                                                                        >  SRR4302540.4059261/1‑94 (MQ=60)
      TATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTT                                                                                        <  SRR4302540.9680879/94‑1 (MQ=60)
      TATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTT                                                                                        >  SRR4302540.4572583/1‑94 (MQ=60)
        TGGCGCACTTACCCCCAAAATGACGGGCGTAATGGGATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAA                                                                                      >  SRR4302540.1499852/1‑94 (MQ=60)
        TGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAA                                                                                      >  SRR4302540.2902213/1‑94 (MQ=60)
        TGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAA                                                                                      >  SRR4302540.4846658/1‑94 (MQ=60)
        TGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAA                                                                                      >  SRR4302540.4846656/1‑94 (MQ=60)
            GCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCG                                                                                  <  SRR4302540.303330/94‑1 (MQ=60)
            GCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCG                                                                                  <  SRR4302540.3142790/94‑1 (MQ=60)
             CACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGG                                                                                 >  SRR4302540.6936352/1‑94 (MQ=60)
             CACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGG                                                                                 >  SRR4302540.9446131/1‑94 (MQ=60)
              ACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGA                                                                                <  SRR4302540.4160739/94‑1 (MQ=60)
              ACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGA                                                                                >  SRR4302540.7149543/1‑94 (MQ=60)
              ACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGA                                                                                >  SRR4302540.10142476/1‑94 (MQ=60)
               CTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAG                                                                               <  SRR4302540.7451651/94‑1 (MQ=60)
               CTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAG                                                                               >  SRR4302540.979174/1‑94 (MQ=60)
               CTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAG                                                                               >  SRR4302540.4278561/1‑94 (MQ=60)
                TTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGG                                                                              >  SRR4302540.3152423/1‑94 (MQ=60)
                TTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGG                                                                              >  SRR4302540.5315097/1‑94 (MQ=60)
                 TACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGA                                                                             >  SRR4302540.2391740/1‑94 (MQ=60)
                 TACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGA                                                                             >  SRR4302540.7697245/1‑94 (MQ=60)
                  ACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAA                                                                            <  SRR4302540.3004128/94‑1 (MQ=60)
                  ACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAA                                                                            >  SRR4302540.8231974/1‑94 (MQ=60)
                  ACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAA                                                                            >  SRR4302540.7361545/1‑94 (MQ=60)
                  ACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAA                                                                            >  SRR4302540.1869783/1‑94 (MQ=60)
                   CCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAAT                                                                           <  SRR4302540.6818006/94‑1 (MQ=60)
                     CCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAA                                                                         >  SRR4302540.897261/1‑94 (MQ=60)
                     CCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAA                                                                         >  SRR4302540.3827575/1‑94 (MQ=60)
                     CCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAA                                                                         >  SRR4302540.5286638/1‑94 (MQ=60)
                      CCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAAT                                                                        <  SRR4302540.5572589/94‑1 (MQ=60)
                      CCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAAT                                                                        <  SRR4302540.809271/94‑1 (MQ=60)
                      CCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAAT                                                                        >  SRR4302540.9392559/1‑94 (MQ=60)
                      CCAAAATGACGGGCGTAATGGAATAACGAGGGGGGAATTTTTCGCATGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAAT                                                                        <  SRR4302540.5572590/94‑1 (MQ=60)
                       CAAAATGGCAGGCGTAATGGAAGAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATG                                                                       <  SRR4302540.1860605/94‑1 (MQ=60)
                       CAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATG                                                                       >  SRR4302540.7841232/1‑94 (MQ=60)
                       CAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATG                                                                       >  SRR4302540.6216943/1‑94 (MQ=60)
                       CAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATG                                                                       <  SRR4302540.2311393/94‑1 (MQ=60)
                        AAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGT                                                                      >  SRR4302540.463118/1‑94 (MQ=60)
                         AAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGGGGAATAATGTC                                                                     >  SRR4302540.800361/1‑94 (MQ=60)
                         AAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTC                                                                     >  SRR4302540.7405073/1‑94 (MQ=60)
                         AAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTC                                                                     >  SRR4302540.3512380/1‑94 (MQ=60)
                         AAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTC                                                                     >  SRR4302540.60510/1‑94 (MQ=60)
                         AAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTC                                                                     <  SRR4302540.8611064/94‑1 (MQ=60)
                         AAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTC                                                                     >  SRR4302540.5280973/1‑94 (MQ=60)
                         AAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCCGAGGAATAATGTC                                                                     <  SRR4302540.6544503/94‑1 (MQ=60)
                           ATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCAT                                                                   <  SRR4302540.6187073/94‑1 (MQ=60)
                           ATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCAT                                                                   <  SRR4302540.2667839/94‑1 (MQ=60)
                           ATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCAT                                                                   <  SRR4302540.4467823/94‑1 (MQ=60)
                            TGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATA                                                                  <  SRR4302540.1836035/94‑1 (MQ=60)
                            TGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATA                                                                  >  SRR4302540.9908906/1‑94 (MQ=60)
                            TGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAAGTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATA                                                                  <  SRR4302540.1154188/94‑1 (MQ=60)
                             GACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATAT                                                                 <  SRR4302540.1724031/94‑1 (MQ=60)
                               CGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCT                                                               <  SRR4302540.5406127/94‑1 (MQ=60)
                               CGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCT                                                               <  SRR4302540.9314486/94‑1 (MQ=60)
                                GGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTG                                                              >  SRR4302540.7099998/1‑94 (MQ=60)
                                 GGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGA                                                             >  SRR4302540.9375122/1‑94 (MQ=60)
                                  GCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAA                                                            <  SRR4302540.4116332/94‑1 (MQ=60)
                                  GCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAA                                                            <  SRR4302540.2382775/94‑1 (MQ=60)
                                    GTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATT                                                          >  SRR4302540.6946185/1‑94 (MQ=60)
                                     TAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTT                                                         >  SRR4302540.2558893/1‑94 (MQ=60)
                                     TAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTT                                                         >  SRR4302540.3396479/1‑94 (MQ=60)
                                     TAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTT                                                         <  SRR4302540.8611785/94‑1 (MQ=60)
                                       ATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAA                                                       >  SRR4302540.5460710/1‑94 (MQ=60)
                                       ATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAA                                                       >  SRR4302540.2483933/1‑94 (MQ=60)
                                        TGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAG                                                      <  SRR4302540.976060/94‑1 (MQ=60)
                                         GGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGATTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGA                                                     <  SRR4302540.5007264/94‑1 (MQ=60)
                                          GAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGAC                                                    >  SRR4302540.1614459/1‑94 (MQ=60)
                                          GAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGAC                                                    <  SRR4302540.2291074/94‑1 (MQ=60)
                                          GAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGAC                                                    <  SRR4302540.5420366/94‑1 (MQ=60)
                                           AATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACT                                                   <  SRR4302540.167014/94‑1 (MQ=60)
                                            ATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTT                                                  >  SRR4302540.3083196/1‑94 (MQ=60)
                                            ATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTT                                                  <  SRR4302540.1990993/94‑1 (MQ=60)
                                            ATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTT                                                  <  SRR4302540.1990994/94‑1 (MQ=60)
                                             TAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTT                                                 >  SRR4302540.4558273/1‑94 (MQ=60)
                                              AACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTA                                                >  SRR4302540.5328200/1‑94 (MQ=60)
                                              AACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTA                                                <  SRR4302540.124002/94‑1 (MQ=60)
                                              AACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTA                                                <  SRR4302540.9420216/94‑1 (MQ=60)
                                              AACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTA                                                >  SRR4302540.4175156/1‑94 (MQ=60)
                                                ctcatgaGGAATTTTTCGCTTGAATAAGAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGTAATAATGTCATATCTGAATTTAAGACTTTACC                                              <  SRR4302540.6366346/87‑1 (MQ=60)
                                                CGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACC                                              <  SRR4302540.7946058/94‑1 (MQ=60)
                                                CGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACC                                              >  SRR4302540.6806371/1‑94 (MQ=60)
                                                CGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACC                                              <  SRR4302540.6884459/94‑1 (MQ=60)
                                                CGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACC                                              <  SRR4302540.4924769/94‑1 (MQ=60)
                                                 GCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCA                                             >  SRR4302540.2132075/1‑94 (MQ=60)
                                                 GCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCA                                             <  SRR4302540.7126758/94‑1 (MQ=60)
                                                  CAGGGTGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAG                                            <  SRR4302540.6367197/94‑1 (MQ=60)
                                                  CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAG                                            >  SRR4302540.3901601/1‑94 (MQ=60)
                                                  CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAG                                            <  SRR4302540.4173503/94‑1 (MQ=60)
                                                  CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAG                                            <  SRR4302540.3694000/94‑1 (MQ=60)
                                                  CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAG                                            <  SRR4302540.1509726/94‑1 (MQ=60)
                                                   AGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTCCCAGC                                           <  SRR4302540.3426940/94‑1 (MQ=60)
                                                   AGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGC                                           <  SRR4302540.92643/94‑1 (MQ=60)
                                                   AGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGC                                           >  SRR4302540.3226436/1‑94 (MQ=60)
                                                    GGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCG                                          >  SRR4302540.7280860/1‑94 (MQ=60)
                                                    GGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCAGAATTTAAGACTTTACCAGCG                                          >  SRR4302540.5286616/1‑94 (MQ=60)
                                                     GGGGAATTTTTCGCCTGAATATAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGA                                         <  SRR4302540.9491142/94‑1 (MQ=60)
                                                      GGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAA                                        >  SRR4302540.3117726/1‑94 (MQ=60)
                                                       GGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAA                                       <  SRR4302540.2727636/94‑1 (MQ=60)
                                                       GGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAA                                       >  SRR4302540.2133907/1‑94 (MQ=60)
                                                       GGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAA                                       >  SRR4302540.8768391/1‑94 (MQ=60)
                                                       GGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAA                                       >  SRR4302540.2532392/1‑94 (MQ=60)
                                                       GGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAA                                       >  SRR4302540.2133908/1‑94 (MQ=60)
                                                         AATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACA                                     >  SRR4302540.9513480/1‑94 (MQ=60)
                                                           TTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACA                                   <  SRR4302540.8584963/94‑1 (MQ=60)
                                                           TTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACA                                   >  SRR4302540.5065363/1‑94 (MQ=60)
                                                            TTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACAC                                  >  SRR4302540.9762752/1‑94 (MQ=60)
                                                            TTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACAC                                  <  SRR4302540.2290730/94‑1 (MQ=60)
                                                            TTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACAC                                  >  SRR4302540.2217183/1‑94 (MQ=60)
                                                              TTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAA                                <  SRR4302540.4574068/94‑1 (MQ=60)
                                                              TTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAA                                <  SRR4302540.7544583/94‑1 (MQ=60)
                                                              TTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAA                                <  SRR4302540.3092348/94‑1 (MQ=60)
                                                              TTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAA                                >  SRR4302540.301215/1‑94 (MQ=60)
                                                               TCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAAT                               >  SRR4302540.9966783/1‑94 (MQ=60)
                                                               TCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAAT                               <  SRR4302540.5868252/94‑1 (MQ=60)
                                                               TCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAAT                               <  SRR4302540.2775469/94‑1 (MQ=60)
                                                               TCGCCTGAATAAAAAGAATGGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAAT                               <  SRR4302540.4164916/94‑1 (MQ=60)
                                                                CGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATG                              >  SRR4302540.3355117/1‑94 (MQ=60)
                                                                CGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATG                              >  SRR4302540.9617614/1‑94 (MQ=60)
                                                                CGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATG                              <  SRR4302540.6835015/94‑1 (MQ=60)
                                                                 GCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTGAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGC                             <  SRR4302540.9418636/94‑1 (MQ=60)
                                                                 GCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGC                             <  SRR4302540.9651295/94‑1 (MQ=60)
                                                                   CTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTT                           >  SRR4302540.3420351/1‑94 (MQ=60)
                                                                   CTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTT                           >  SRR4302540.4987701/1‑94 (MQ=60)
                                                                   CTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTT                           >  SRR4302540.1913361/1‑94 (MQ=60)
                                                                   CTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTT                           <  SRR4302540.9230044/94‑1 (MQ=60)
                                                                   CTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTT                           >  SRR4302540.2070847/1‑94 (MQ=60)
                                                                   CTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTT                           >  SRR4302540.543580/1‑94 (MQ=60)
                                                                    TGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTG                          >  SRR4302540.5331628/1‑94 (MQ=60)
                                                                    TGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTG                          <  SRR4302540.1737903/94‑1 (MQ=60)
                                                                     TAATAAAAAGAAATGGCTGCC‑GGGTTATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGC                         <  SRR4302540.5612227/94‑1 (MQ=60)
                                                                     GAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGC                         >  SRR4302540.4543361/1‑94 (MQ=60)
                                                                      AATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCA                        <  SRR4302540.7682539/94‑1 (MQ=60)
                                                                       ATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCAT                       <  SRR4302540.7216165/94‑1 (MQ=60)
                                                                       ATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCAT                       <  SRR4302540.7848845/94‑1 (MQ=60)
                                                                       ATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCAT                       >  SRR4302540.5763428/1‑94 (MQ=60)
                                                                       ATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCAT                       <  SRR4302540.8317954/94‑1 (MQ=60)
                                                                       ATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCAT                       >  SRR4302540.5763427/1‑94 (MQ=60)
                                                                       ATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCAT                       <  SRR4302540.8317955/94‑1 (MQ=60)
                                                                       ATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCAT                       <  SRR4302540.4613600/94‑1 (MQ=60)
                                                                       ATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCAT                       <  SRR4302540.702269/94‑1 (MQ=60)
                                                                       ATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCAT                       >  SRR4302540.5324136/1‑94 (MQ=60)
                                                                        TAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATA                      <  SRR4302540.6892945/94‑1 (MQ=60)
                                                                         AAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATAT                     <  SRR4302540.9837879/94‑1 (MQ=60)
                                                                         AAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATAT                     <  SRR4302540.2217079/94‑1 (MQ=60)
                                                                         AAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATAT                     <  SRR4302540.2685192/94‑1 (MQ=60)
                                                                         AAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATAT                     <  SRR4302540.5041498/94‑1 (MQ=60)
                                                                         AAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATAT                     <  SRR4302540.7949794/94‑1 (MQ=60)
                                                                          AAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATT                    >  SRR4302540.383199/1‑94 (MQ=60)
                                                                          AAAAGAAGTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATT                    <  SRR4302540.1650800/94‑1 (MQ=60)
                                                                           AAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTC                   >  SRR4302540.324408/1‑94 (MQ=60)
                                                                           AAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTC                   <  SRR4302540.371149/94‑1 (MQ=60)
                                                                           AAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTC                   <  SRR4302540.675820/94‑1 (MQ=60)
                                                                           AAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTC                   <  SRR4302540.5087987/94‑1 (MQ=60)
                                                                           AAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTC                   <  SRR4302540.1311873/94‑1 (MQ=60)
                                                                            AAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCG                  <  SRR4302540.6962431/94‑1 (MQ=60)
                                                                             AGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGT                 >  SRR4302540.7793028/1‑94 (MQ=60)
                                                                             AGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGT                 >  SRR4302540.5827209/1‑94 (MQ=60)
                                                                             AGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGT                 >  SRR4302540.330693/1‑94 (MQ=60)
                                                                              GAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTA                >  SRR4302540.7755049/1‑94 (MQ=60)
                                                                               AATTGACTGCC‑GTGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAA               <  SRR4302540.631187/94‑1 (MQ=60)
                                                                               AATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAA               >  SRR4302540.3110161/1‑94 (MQ=60)
                                                                               AATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAA               <  SRR4302540.358423/94‑1 (MQ=60)
                                                                               AATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAA               >  SRR4302540.1259873/1‑94 (MQ=60)
                                                                               AATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAA               <  SRR4302540.2286166/94‑1 (MQ=60)
                                                                                  TGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCA            <  SRR4302540.2326919/94‑1 (MQ=60)
                                                                                   GACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCAT           >  SRR4302540.5642902/1‑94 (MQ=60)
                                                                                   GACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCAT           <  SRR4302540.1400524/94‑1 (MQ=60)
                                                                                     CTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCG         >  SRR4302540.3145549/1‑94 (MQ=60)
                                                                                     CTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCG         <  SRR4302540.9187896/94‑1 (MQ=60)
                                                                                      TGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGT        >  SRR4302540.1197631/1‑94 (MQ=60)
                                                                                       GCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTT       <  SRR4302540.9392893/94‑1 (MQ=60)
                                                                                         CCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTT      <  SRR4302540.5841933/94‑1 (MQ=60)
                                                                                         CCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTT      >  SRR4302540.2116619/1‑94 (MQ=60)
                                                                                         CCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTT      >  SRR4302540.9255504/1‑94 (MQ=60)
                                                                                         CCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTT      <  SRR4302540.4636569/94‑1 (MQ=60)
                                                                                         CCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTT      >  SRR4302540.5516370/1‑94 (MQ=60)
                                                                                          CGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTG     <  SRR4302540.10032031/94‑1 (MQ=60)
                                                                                           GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGG    <  SRR4302540.2465894/94‑1 (MQ=60)
                                                                                           GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGG    >  SRR4302540.2569488/1‑94 (MQ=60)
                                                                                           GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGG    <  SRR4302540.8872372/94‑1 (MQ=60)
                                                                                           GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGG    >  SRR4302540.3442144/1‑94 (MQ=60)
                                                                                           GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGG    >  SRR4302540.3701055/1‑94 (MQ=60)
                                                                                           GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGG    >  SRR4302540.3801525/1‑94 (MQ=60)
                                                                                           GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGG    >  SRR4302540.10064141/1‑94 (MQ=60)
                                                                                            GGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGGC   >  SRR4302540.5137522/1‑94 (MQ=60)
                                                                                             GTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGGCT  >  SRR4302540.1369240/1‑94 (MQ=60)
                                                                                             GTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGGCT  >  SRR4302540.6671193/1‑94 (MQ=60)
                                                                                             GTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGGCT  <  SRR4302540.1003078/94‑1 (MQ=60)
                                                                                             |                                                                                             
AATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGGCT  >  NC_000913/4542550‑4542736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑