Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,082,961	A→G	S324P (TCC→CCC)	speA ←	biosynthetic arginine decarboxylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,082,961	0	A	G	100.0%	797.2 / NA	250	S324P (TCC→CCC)	speA	biosynthetic arginine decarboxylase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (150/100); total (150/100)

Only 100 of 264 total aligned reads displayed.

GCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGACTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACAT  >  NC_000913/3082871‑3083050

gCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCt                                                                                         <  1:2734457/93‑1 (MQ=255)

  ggCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGc                                                                                       <  1:4207832/93‑1 (MQ=255)

  ggCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGc                                                                                       <  1:2092352/93‑1 (MQ=255)

   gCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCg                                                                                      <  1:5106133/93‑1 (MQ=255)

     aGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGaa                                                                                    >  2:4464854/1‑93 (MQ=255)

     aGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGaa                                                                                    >  1:5486257/1‑93 (MQ=255)

       aCCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACg                                                                                  <  2:3952216/93‑1 (MQ=255)

        ccGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGa                                                                                 >  1:4105644/1‑93 (MQ=255)

        ccGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGa                                                                                 <  2:5474845/93‑1 (MQ=255)

         cGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTGATTGAGGCCGTAGGTCACCGAACAGTCGGGCTGCGAACGAg                                                                                >  1:137815/1‑93 (MQ=255)

         cGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAg                                                                                <  2:2142540/93‑1 (MQ=255)

         cGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAg                                                                                <  1:1629267/93‑1 (MQ=255)

          gTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGt                                                                               <  1:4937504/93‑1 (MQ=255)

           ttttCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTa                                                                              >  1:4286156/1‑93 (MQ=255)

                ttcACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTc                                                                         <  1:4565020/93‑1 (MQ=255)

                 tcACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCa                                                                        <  2:1207940/93‑1 (MQ=255)

                   acacGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCGCCGAACAGTCGGGCTGCGAACGAGTACCTTCATa                                                                      <  2:1550402/93‑1 (MQ=255)

                   acacGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATa                                                                      >  2:5899508/1‑93 (MQ=255)

                    cacGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATaa                                                                     <  2:3802936/93‑1 (MQ=255)

                     acGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAAt                                                                    >  1:1915027/1‑93 (MQ=255)

                     acGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAAt                                                                    >  2:827228/1‑93 (MQ=255)

                       gCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATcc                                                                  <  2:2551963/93‑1 (MQ=255)

                        cATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCa                                                                 >  2:2023916/1‑93 (MQ=255)

                        cATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCa                                                                 >  2:1772384/1‑93 (MQ=255)

                        cATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCa                                                                 <  1:5034202/93‑1 (MQ=255)

                        cATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCa                                                                 <  2:362103/93‑1 (MQ=255)

                         aTCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCAc                                                                >  1:4029258/1‑93 (MQ=255)

                          tCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACg                                                               >  1:1971751/1‑93 (MQ=255)

                          tCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACg                                                               >  2:4045976/1‑93 (MQ=255)

                          tCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACg                                                               <  1:4819587/93‑1 (MQ=255)

                          tCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACg                                                               <  2:3786040/93‑1 (MQ=255)

                          tCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGCACCTTCATAATCCACg                                                               >  2:4097987/1‑93 (MQ=255)

                           cGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGc                                                              <  2:2128748/93‑1 (MQ=255)

                            gCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGcc                                                             >  1:6266678/1‑93 (MQ=255)

                            gCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGcc                                                             >  1:1586183/1‑93 (MQ=255)

                            gCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGcc                                                             >  1:2208653/1‑93 (MQ=255)

                             ccAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGccc                                                            >  2:3999991/1‑93 (MQ=255)

                              cAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCa                                                           >  1:4316979/1‑93 (MQ=255)

                              cAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCa                                                           <  2:342791/93‑1 (MQ=255)

                               aaTCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAg                                                          >  2:1122090/1‑93 (MQ=255)

                               aaTCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAg                                                          >  2:5182350/1‑93 (MQ=255)

                               aaTCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAg                                                          <  1:3704548/93‑1 (MQ=255)

                               aaTCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAg                                                          >  2:451286/1‑93 (MQ=255)

                                aTCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGa                                                         >  1:447453/1‑93 (MQ=255)

                                aTCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGa                                                         <  2:2364810/93‑1 (MQ=255)

                                     ccAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGAccgcc                                                    >  2:5582616/1‑93 (MQ=255)

                                     ccAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGAccgcc                                                    >  2:1421361/1‑93 (MQ=255)

                                      cAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGAccgccg                                                   >  1:324499/1‑93 (MQ=255)

                                       aGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGAccgccgc                                                  <  2:5734915/93‑1 (MQ=255)

                                       aGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGAccgccgc                                                  >  2:266768/1‑93 (MQ=255)

                                       aGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGAccgccgc                                                  <  1:1176610/93‑1 (MQ=255)

                                        gATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGAccgccgcc                                                 >  2:5793831/1‑93 (MQ=255)

                                         aTAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGAccgccgccg                                                >  2:1821112/1‑93 (MQ=255)

                                         aTAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGAccgccgccg                                                <  2:353730/93‑1 (MQ=255)

                                          tAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGa                                               >  1:334366/1‑93 (MQ=255)

                                          tAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGa                                               <  2:3227728/93‑1 (MQ=255)

                                          tAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGa                                               <  1:1877000/93‑1 (MQ=255)

                                          tAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTAATAATCCACGCCCAGAccgccgccgc                                               >  1:3058256/1‑92 (MQ=255)

                                           caTGTTGTTGGGGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGAccgccgccggc                                              >  2:796062/2‑91 (MQ=255)

                                           aaTGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGAc                                              <  1:5315501/93‑1 (MQ=255)

                                           aaTGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGAc                                              >  1:1064305/1‑93 (MQ=255)

                                              gttgttGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTc                                           <  1:5983433/93‑1 (MQ=255)

                                                tgttgGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGa                                         <  2:4842601/93‑1 (MQ=255)

                                                tgttgGCGTATTCATGGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGa                                         <  1:3842140/93‑1 (MQ=255)

                                                  ttgGCGTATTCATTGAGGCCGTAGTTCCCCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAg                                       <  2:269540/93‑1 (MQ=255)

                                                   tgGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGc                                      >  2:958428/1‑93 (MQ=255)

                                                       gTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTg                                  >  1:1010382/1‑93 (MQ=255)

                                                        tATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGa                                 <  1:2420603/93‑1 (MQ=255)

                                                          ttCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAat                               >  1:2830760/1‑93 (MQ=255)

                                                           tCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAata                              <  2:2401050/93‑1 (MQ=255)

                                                           tCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAata                              >  1:2055634/1‑93 (MQ=255)

                                                            cATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAatat                             >  1:3871498/1‑93 (MQ=255)

                                                             aTTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATAtt                            >  2:3392899/1‑93 (MQ=255)

                                                             aTTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATAtt                            <  1:2265044/93‑1 (MQ=255)

                                                             aTTGAGGCAGTAGCTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATAtt                            <  2:4382514/93‑1 (MQ=255)

                                                              ttGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTg                           >  1:3552963/1‑93 (MQ=255)

                                                               tGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGa                          <  1:5511695/93‑1 (MQ=255)

                                                                gAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGAc                         <  1:183429/93‑1 (MQ=255)

                                                                  ggCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGc                       >  1:746499/1‑93 (MQ=255)

                                                                     cGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCa                    >  1:5743371/1‑93 (MQ=255)

                                                                      gTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACAGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAg                   >  2:3049415/1‑93 (MQ=255)

                                                                       tAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGc                  >  2:1667954/1‑93 (MQ=255)

                                                                        aGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCt                 >  1:5893611/1‑93 (MQ=255)

                                                                         gTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCGCAGCtt                >  1:6046288/1‑93 (MQ=255)

                                                                         gTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCtt                <  1:3607586/93‑1 (MQ=255)

                                                                          ttCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCtat               >  2:338121/1‑91 (MQ=255)

                                                                            cACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTtgtg             <  2:1315945/93‑1 (MQ=255)

                                                                            cACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTtgtg             >  1:2729435/1‑93 (MQ=255)

                                                                             aCCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGc            >  2:4242615/1‑93 (MQ=255)

                                                                             aCCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGc            <  2:3333810/93‑1 (MQ=255)

                                                                              ccGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCa           >  1:615127/1‑93 (MQ=255)

                                                                               cGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAg          <  2:6263235/93‑1 (MQ=255)

                                                                                gAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGt         <  2:5123640/93‑1 (MQ=255)

                                                                                  aCAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTc       <  1:4673610/93‑1 (MQ=255)

                                                                                    aGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCca     <  2:3878389/93‑1 (MQ=255)

                                                                                     gTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCgac    >  2:4196876/1‑93 (MQ=255)

                                                                                      tCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCcaca   <  1:4532337/93‑1 (MQ=255)

                                                                                      tCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCcaca   <  1:5622265/93‑1 (MQ=255)

                                                                                      tCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCcaca   >  1:957833/1‑93 (MQ=255)

                                                                                       cGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACAt  >  1:1335841/1‑93 (MQ=255)

GCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGACTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACAT  >  NC_000913/3082871‑3083050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GATGCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGACTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACATAGAA  >  NC_000913/3082868‑3083054

GATGCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGG                                                                                               <  SRR4302533.3531504/94‑1 (MQ=60)

GATGCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGG                                                                                               >  SRR4302533.3003182/1‑94 (MQ=60)

GATGCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGG                                                                                               >  SRR4302533.5826576/1‑94 (MQ=60)

   GCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTG                                                                                            <  SRR4302533.2751229/94‑1 (MQ=60)

   GCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTG                                                                                            <  SRR4302533.1724567/94‑1 (MQ=60)

    CGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGC                                                                                           >  SRR4302533.3715564/1‑94 (MQ=60)

    CGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGC                                                                                           >  SRR4302533.2860400/1‑94 (MQ=60)

    CGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGC                                                                                           <  SRR4302533.5850525/94‑1 (MQ=60)

     GGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCG                                                                                          <  SRR4302533.3973004/94‑1 (MQ=60)

     GGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCG                                                                                          <  SRR4302533.4233291/94‑1 (MQ=60)

     GGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCG                                                                                          <  SRR4302533.2105237/94‑1 (MQ=60)

      GCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGA                                                                                         <  SRR4302533.5136979/94‑1 (MQ=60)

      GCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGA                                                                                         >  SRR4302533.5195808/1‑94 (MQ=60)

       CAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAA                                                                                        >  SRR4302533.1044113/1‑94 (MQ=60)

       CAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAA                                                                                        >  SRR4302533.5519326/1‑94 (MQ=60)

        AGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAAC                                                                                       <  SRR4302533.4268457/94‑1 (MQ=60)

        AGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAAC                                                                                       >  SRR4302533.6160196/1‑94 (MQ=60)

        AGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAAC                                                                                       >  SRR4302533.2018264/1‑94 (MQ=60)

        AGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAAC                                                                                       >  SRR4302533.4068811/1‑94 (MQ=60)

        AGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAAC                                                                                       <  SRR4302533.2144078/94‑1 (MQ=60)

          ACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGA                                                                                     >  SRR4302533.4130613/1‑94 (MQ=60)

           CCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTGATTGAGGCCGTAGGTCACCGAACAGTCGGGCTGCGAACGAG                                                                                    >  SRR4302533.138690/1‑94 (MQ=60)

           CCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAG                                                                                    >  SRR4302533.3488465/1‑94 (MQ=60)

           CCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAG                                                                                    <  SRR4302533.4537523/94‑1 (MQ=60)

            CGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGT                                                                                   <  SRR4302533.1639134/94‑1 (MQ=60)

            CGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGT                                                                                   <  SRR4302533.1350292/94‑1 (MQ=60)

            CGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGT                                                                                   >  SRR4302533.2215678/1‑94 (MQ=60)

            CGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGT                                                                                   >  SRR4302533.5703117/1‑94 (MQ=60)

            CGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGT                                                                                   >  SRR4302533.1624018/1‑94 (MQ=60)

            CGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGA                                                                                   >  SRR4302533.2672484/1‑94 (MQ=60)

            CGTTTTCTTCACACGCATCGCCAATCGCCAAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGT                                                                                   >  SRR4302533.3666839/1‑94 (MQ=60)

             GTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTA                                                                                  <  SRR4302533.4967396/94‑1 (MQ=60)

             GTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTA                                                                                  >  SRR4302533.4311928/1‑94 (MQ=60)

               TTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACC                                                                                <  SRR4302533.3122386/94‑1 (MQ=60)

               TTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACC                                                                                <  SRR4302533.788281/94‑1 (MQ=60)

                TTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCT                                                                               >  SRR4302533.4762749/1‑94 (MQ=60)

                TTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCT                                                                               <  SRR4302533.4534235/94‑1 (MQ=60)

                 TCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTT                                                                              <  SRR4302533.5391778/94‑1 (MQ=60)

                  CTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTC                                                                             <  SRR4302533.4300905/94‑1 (MQ=60)

                  CTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTC                                                                             >  SRR4302533.2378821/1‑94 (MQ=60)

                   TTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCA                                                                            <  SRR4302533.4592696/94‑1 (MQ=60)

                    TCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCAT                                                                           <  SRR4302533.698057/94‑1 (MQ=60)

                     CACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATA                                                                          >  SRR4302533.2519542/1‑94 (MQ=60)

                       CACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAAT                                                                        >  SRR4302533.1926717/1‑94 (MQ=60)

                       CACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAAT                                                                        >  SRR4302533.2059285/1‑94 (MQ=60)

                         CGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCC                                                                      <  SRR4302533.5578256/94‑1 (MQ=60)

                         CGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCC                                                                      >  SRR4302533.4598621/1‑94 (MQ=60)

                           CATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCAC                                                                    >  SRR4302533.4053783/1‑94 (MQ=60)

                           CATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCAC                                                                    <  SRR4302533.5064696/94‑1 (MQ=60)

                           CATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCAC                                                                    >  SRR4302533.2993436/1‑94 (MQ=60)

                            ATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACG                                                                   >  SRR4302533.1983818/1‑94 (MQ=60)

                            ATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACG                                                                   >  SRR4302533.1416854/1‑94 (MQ=60)

                             TCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGC                                                                  <  SRR4302533.4848794/94‑1 (MQ=60)

                              CGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCC                                                                 >  SRR4302533.2222276/1‑94 (MQ=60)

                              CGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCC                                                                 >  SRR4302533.1595744/1‑94 (MQ=60)

                              CGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCC                                                                 >  SRR4302533.6304122/1‑94 (MQ=60)

                               GCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCC                                                                >  SRR4302533.5980960/1‑94 (MQ=60)

                                CCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCA                                                               >  SRR4302533.4342976/1‑94 (MQ=60)

                                 CAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAG                                                              <  SRR4302533.1908937/94‑1 (MQ=60)

                                 CAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAG                                                              >  SRR4302533.4406592/1‑94 (MQ=60)

                                  AATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGA                                                             <  SRR4302533.3727301/94‑1 (MQ=60)

                                  AATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGA                                                             >  SRR4302533.5008000/1‑94 (MQ=60)

                                  AATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGA                                                             >  SRR4302533.450129/1‑94 (MQ=60)

                                    TCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACC                                                           <  SRR4302533.3748577/94‑1 (MQ=60)

                                    TCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACC                                                           <  SRR4302533.1666774/94‑1 (MQ=60)

                                    TCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACC                                                           <  SRR4302533.4631757/94‑1 (MQ=60)

                                    TCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACC                                                           <  SRR4302533.4992787/94‑1 (MQ=60)

                                     CGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCG                                                          >  SRR4302533.3568827/1‑94 (MQ=60)

                                       CCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCC                                                        >  SRR4302533.1252768/1‑94 (MQ=60)

                                       CCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGGACCTTCATAATCCACGCCCAGACCGCC                                                        >  SRR4302533.2079854/1‑94 (MQ=60)

                                       CCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGGACCTTCATAATCCACGCCCACACAGCC                                                        >  SRR4302533.5542758/1‑94 (MQ=60)

                                        CCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCG                                                       >  SRR4302533.326478/1‑94 (MQ=60)

                                        CCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCG                                                       <  SRR4302533.1871548/94‑1 (MQ=60)

                                         CAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGC                                                      >  SRR4302533.4142098/1‑94 (MQ=60)

                                          AGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCC                                                     <  SRR4302533.1183671/94‑1 (MQ=60)

                                          AGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCC                                                     >  SRR4302533.6207353/1‑94 (MQ=60)

                                           GATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCG                                                    >  SRR4302533.99382/1‑94 (MQ=60)

                                            ATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGA                                                   >  SRR4302533.336410/1‑94 (MQ=60)

                                            ATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGA                                                   >  SRR4302533.5239076/1‑94 (MQ=60)

                                            ATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTAATAATCCACGCCCAGACCGCCGCCGC                                                   >  SRR4302533.3077023/1‑94 (MQ=60)

                                             TAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGAC                                                  >  SRR4302533.1070558/1‑94 (MQ=60)

                                             TAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGAC                                                  <  SRR4302533.1888439/94‑1 (MQ=60)

                                              AATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACG                                                 <  SRR4302533.5347354/94‑1 (MQ=60)

                                               ATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGT                                                <  SRR4302533.6196920/94‑1 (MQ=60)

                                               ATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGT                                                >  SRR4302533.4894683/1‑94 (MQ=60)

                                                TGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTC                                               <  SRR4302533.3607324/94‑1 (MQ=60)

                                                 GTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCG                                              <  SRR4302533.42202/94‑1 (MQ=60)

                                                 GTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCG                                              <  SRR4302533.6019669/94‑1 (MQ=60)

                                                   TGTTGGCGTATTCATGGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAA                                            <  SRR4302533.3865613/94‑1 (MQ=60)

                                                     TTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGAGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGC                                          <  SRR4302533.5550118/94‑1 (MQ=60)

                                                      TGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCA                                         >  SRR4302533.2748920/1‑94 (MQ=60)

                                                       GGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCAC                                        >  SRR4302533.4846441/1‑94 (MQ=60)

                                                         CGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTG                                      >  SRR4302533.1016291/1‑94 (MQ=60)

                                                          GTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGA                                     >  SRR4302533.2779078/1‑94 (MQ=60)

                                                           TATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAA                                    <  SRR4302533.2435551/94‑1 (MQ=60)

                                                           TATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAA                                    <  SRR4302533.5355489/94‑1 (MQ=60)

                                                            ATTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAAT                                   >  SRR4302533.2848181/1‑94 (MQ=60)

                                                             TTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACTCCCACACCGCCGCCGACGTCGAAGCACTGAATT                                  >  SRR4302533.2164747/1‑94 (MQ=60)

                                                             TTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCTCCGCCGACGTCGAAGCACTGAATA                                  <  SRR4302533.5737608/94‑1 (MQ=60)

                                                             TTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATA                                  >  SRR4302533.3865423/1‑94 (MQ=60)

                                                             TTCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATA                                  >  SRR4302533.2068312/1‑94 (MQ=60)

                                                              TCATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATAT                                 >  SRR4302533.3895126/1‑94 (MQ=60)

                                                               CATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATT                                <  SRR4302533.4569713/94‑1 (MQ=60)

                                                                ATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTG                               >  SRR4302533.3574847/1‑94 (MQ=60)

                                                                ATTGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTG                               <  SRR4302533.2279059/94‑1 (MQ=60)

                                                                 TTGAGCCCGTCGTTCACCGAACAGTCGGGCTGCGACCGAGTACCTTCATAATCCGCGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGA                              <  SRR4302533.33046/94‑1 (MQ=60)

                                                                  TGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGAC                             <  SRR4302533.3906979/94‑1 (MQ=60)

                                                                  TGAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGAC                             <  SRR4302533.5544970/94‑1 (MQ=60)

                                                                   GAGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACG                            <  SRR4302533.184568/94‑1 (MQ=60)

                                                                    AGGCCGTAGTTCACCGAATAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGC                           >  SRR4302533.3337126/1‑94 (MQ=60)

                                                                    AGGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGC                           >  SRR4302533.750892/1‑94 (MQ=60)

                                                                     GGCCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCC                          <  SRR4302533.2254211/94‑1 (MQ=60)

                                                                       CCGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCA                        >  SRR4302533.5778031/1‑94 (MQ=60)

                                                                        CGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAG                       >  SRR4302533.2389210/1‑94 (MQ=60)

                                                                        CGTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAC                       >  SRR4302533.4336693/1‑94 (MQ=60)

                                                                         GTAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGC                      >  SRR4302533.6053396/1‑94 (MQ=60)

                                                                          TAGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCT                     >  SRR4302533.5929209/1‑94 (MQ=60)

                                                                           AGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCGCAGCTT                    >  SRR4302533.6082918/1‑94 (MQ=60)

                                                                           AGTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTT                    <  SRR4302533.1149616/94‑1 (MQ=60)

                                                                            GTTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTG                   <  SRR4302533.3629795/94‑1 (MQ=60)

                                                                             TTCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGT                  <  SRR4302533.5066810/94‑1 (MQ=60)

                                                                              TCACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTG                 >  SRR4302533.2746176/1‑94 (MQ=60)

                                                                               CACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGC                >  SRR4302533.2824276/1‑94 (MQ=60)

                                                                                ACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCA               >  SRR4302533.1355044/1‑94 (MQ=60)

                                                                                ACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCA               >  SRR4302533.1951412/1‑94 (MQ=60)

                                                                                ACCGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCA               >  SRR4302533.618741/1‑94 (MQ=60)

                                                                                 CCGAACAGTCGGGCTGAGAACTAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAG              <  SRR4302533.43867/94‑1 (MQ=60)

                                                                                  CGAACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGT             >  SRR4302533.645428/1‑94 (MQ=60)

                                                                                    AACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTC           <  SRR4302533.598225/94‑1 (MQ=60)

                                                                                     ACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCC          >  SRR4302533.1927016/1‑94 (MQ=60)

                                                                                     ACAGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCC          <  SRR4302533.4701929/94‑1 (MQ=60)

                                                                                       AGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCAC        >  SRR4302533.1152915/1‑94 (MQ=60)

                                                                                       AGTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCAC        >  SRR4302533.1865334/1‑94 (MQ=60)

                                                                                        GTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACA       <  SRR4302533.3870664/94‑1 (MQ=60)

                                                                                        GTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACA       >  SRR4302533.963465/1‑94 (MQ=60)

                                                                                        GTCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACA       <  SRR4302533.6021806/94‑1 (MQ=60)

                                                                                         TCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACAT      <  SRR4302533.1402052/94‑1 (MQ=60)

                                                                                         TCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACAT      >  SRR4302533.1343859/1‑94 (MQ=60)

                                                                                         TCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACAT      <  SRR4302533.5656248/94‑1 (MQ=60)

                                                                                         TCGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACAT      <  SRR4302533.4559778/94‑1 (MQ=60)

                                                                                          CGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACATA     >  SRR4302533.602517/1‑94 (MQ=60)

                                                                                          CGGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACATA     >  SRR4302533.1869777/1‑94 (MQ=60)

                                                                                           GGGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACATAG    <  SRR4302533.5891894/94‑1 (MQ=60)

                                                                                            GGCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGGCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGGAGTTGCACATAGA   >  SRR4302533.5710170/1‑94 (MQ=60)

                                                                                             GCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACATAGAA  <  SRR4302533.1904015/94‑1 (MQ=60)

                                                                                             GCTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACATAGAA  <  SRR4302533.2937458/94‑1 (MQ=60)

GATGCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGACTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGCACTGAATATTGACGCCCAGCTTGTGCAGTTCCACATAGAA  >  NC_000913/3082868‑3083054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`