Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,091,676 |
A→G |
Q53R (CAG→CGG) |
yqgF → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,091,676 | 0 | A | G | 100.0%
| 616.6
/ NA
| 192 | Q53R (CAG→CGG) | yqgF | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (85/107); total (85/107) |
Only 100 of 206 total aligned reads displayed.
TTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCAGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCAGAGCGCGTAAATTTGCCAACCGTA > NC_000913/3091586‑3091765
|
ttACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTggcggc < 1:2948427/93‑1 (MQ=255)
tACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGcc < 1:1749169/93‑1 (MQ=255)
cGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGa < 1:3251095/93‑1 (MQ=255)
ggCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGGGGCGGCCgggc > 2:2488802/1‑91 (MQ=255)
gCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGACg > 2:2702951/1‑93 (MQ=255)
cACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGa < 1:2437198/93‑1 (MQ=255)
ccGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGACCATTATCGAGCGTTTACTGAAAGAGTGGCGGCAGGACGaaa < 2:6114628/93‑1 (MQ=255)
cGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAat > 1:408849/1‑93 (MQ=255)
cGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAat < 2:4483376/93‑1 (MQ=255)
gCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGAGaaaaa > 2:216579/1‑91 (MQ=255)
cTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGCAaaca > 2:184013/1‑93 (MQ=255)
tCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAatcat < 2:1573618/93‑1 (MQ=255)
tCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAaacat > 2:5600633/1‑93 (MQ=255)
tgCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAatcatc < 1:4640440/92‑1 (MQ=255)
cGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAatcatc < 2:4554115/93‑1 (MQ=255)
gCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACAtcg > 1:2851774/1‑93 (MQ=255)
gCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCAtcg < 2:4121842/93‑1 (MQ=255)
cccTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGAGGGAAAGAtcgt > 2:1452229/1‑93 (MQ=255)
cccTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCAtcgt > 2:4702116/1‑93 (MQ=255)
cccTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCAtcgt < 1:2657009/93‑1 (MQ=255)
cccTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGGCGAaataatgct > 1:927664/1‑90 (MQ=255)
ccTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGCGTGGCGGCCGGCCGAACACCtcgtc > 1:3001634/1‑93 (MQ=255)
ccTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCAtcgtc < 2:3649364/93‑1 (MQ=255)
cTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACAtcttcg > 1:38695/1‑93 (MQ=255)
cTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAataatcaccg > 1:769136/1‑89 (MQ=255)
cTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCAacgtcg > 2:720912/1‑93 (MQ=255)
tttGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCgg > 2:1364041/1‑93 (MQ=255)
tttGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGGGGAAAAAATCCTCgg > 1:50258/1‑93 (MQ=255)
tGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGtt < 2:3944949/93‑1 (MQ=255)
ccTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACATCGTCGGGTTg > 1:221998/1‑93 (MQ=255)
cTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGc < 2:2889377/93‑1 (MQ=255)
tGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGACGGAATAATCCTCGGGTTTcc > 2:5026925/1‑93 (MQ=255)
gCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGGTTGCCg > 1:5154193/1‑93 (MQ=255)
gCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGGGGCAATCAGCGCCGGGTTGcgg > 1:127228/1‑91 (MQ=255)
aaTTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGGTTGCCggt > 2:2412943/1‑91 (MQ=255)
aaTTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCt < 2:3450451/93‑1 (MQ=255)
aTTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATAGTCGGTTTGGCGCTg > 2:971177/1‑93 (MQ=255)
ttAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATAATCGTCGGGTTGTCCCTGa > 2:2264630/1‑93 (MQ=255)
tAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGaa < 2:440057/93‑1 (MQ=255)
aaGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAGAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAata < 2:2259790/93‑1 (MQ=255)
aaGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTAGGGTTGCCGCTGAata > 2:5535531/1‑93 (MQ=255)
aaGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAata < 1:4776772/93‑1 (MQ=255)
aGCACAGTACGGTACGCCGGACTGCAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAatat < 1:2401091/93‑1 (MQ=255)
aGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAatat < 1:2882910/93‑1 (MQ=255)
ccaGGACGGTACGCCGGACTTGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGa < 2:3733562/92‑1 (MQ=255)
acaGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGa < 2:1540038/93‑1 (MQ=255)
acaGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGa < 2:6067092/93‑1 (MQ=255)
acaGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGa < 2:5229838/93‑1 (MQ=255)
caGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGAc < 1:3111319/93‑1 (MQ=255)
caGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGAc < 2:1736627/93‑1 (MQ=255)
caGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGAc > 1:4243845/1‑93 (MQ=255)
aGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGGAATCATCGTCGGTTTGCCGCTGAATATGGGCg > 2:5284922/1‑93 (MQ=255)
aGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACg < 1:5346623/93‑1 (MQ=255)
ggACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTTGGGTTGCCGCTGGATATTGGCgg > 2:5740083/1‑93 (MQ=255)
gACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGc < 2:277313/93‑1 (MQ=255)
gACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGc > 2:4978882/1‑93 (MQ=255)
cGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGGCGGCAc > 2:1566553/1‑93 (MQ=255)
ggTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCAcc < 2:782696/93‑1 (MQ=255)
gTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGACGAAAACATAGGCGGTTTGGCGCTGGATATGGGGGGGACCg > 1:1212837/1‑93 (MQ=255)
tACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCAcccg > 1:3138511/1‑91 (MQ=255)
tACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGa < 2:1632443/93‑1 (MQ=255)
tACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGa < 1:1507928/93‑1 (MQ=255)
aCGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAg < 2:4163062/93‑1 (MQ=255)
cGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGc < 1:1879358/93‑1 (MQ=255)
ccGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGGTTGCCCCTGAATATGGACGGCACCCGGCaa > 2:3833664/1‑93 (MQ=255)
gACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCa > 1:802943/1‑93 (MQ=255)
tGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTg < 2:4767994/93‑1 (MQ=255)
ggAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGACGAAATCATCGTCGGGTTGCCGCTGGATATGGGCGGGACCGAGGAACCATTGa > 1:1228745/1‑93 (MQ=255)
ggAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGGAAACATCGTCGGGTTGCCGCTGGAATTTGAGGGCACCGCTGAACCATTGa > 1:3786526/1‑93 (MQ=255)
ggAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGTCGCTGGATATGGACGGCCACCAGGCACCATTGa > 1:5705583/1‑93 (MQ=255)
ggAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGa < 2:3595906/93‑1 (MQ=255)
gAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGGATATTGAGGGCACCGAGCAACCATTGA‑c > 1:66076/1‑93 (MQ=255)
gAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑c < 1:1109238/93‑1 (MQ=255)
gAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGGTTGCCGCTGCATATTGACGGCACCGAGCAAACATTGA‑c > 1:5846520/1‑93 (MQ=255)
aaCATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCGAGCCACCATTGA‑Ct > 1:2324420/1‑93 (MQ=255)
aCATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTg < 2:3534884/93‑1 (MQ=255)
aCATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGGACCCAGCAACCCTTGA‑Ctc > 2:139411/1‑92 (MQ=255)
cATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCGAGGAAACCTTTA‑Cttc > 2:424442/1‑91 (MQ=255)
cATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGGCGAAATCATCGTCGGTTTGCCCCTGAATATGGACGGGACCGAGCAACCATTGA‑cgcc > 2:5860076/1‑90 (MQ=255)
aTTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGTTTTCCGCTGAATATTGACGGCACCCAGCAAACATTGA‑CTGcc > 2:1816162/1‑93 (MQ=255)
aTTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGGATATGGACGGCACCGAGCAACCATTTA‑CTTcc > 1:1012623/1‑93 (MQ=255)
aTTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGcc < 2:1210642/93‑1 (MQ=255)
aTTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGcc < 2:4717918/93‑1 (MQ=255)
aTTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAAACACTGA‑CTGcc > 2:3297916/1‑93 (MQ=255)
aTCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCaga < 1:2078228/93‑1 (MQ=255)
aTCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCaga < 2:264111/93‑1 (MQ=255)
tCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCagag < 2:832849/93‑1 (MQ=255)
tCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCagag < 2:2443736/93‑1 (MQ=255)
tCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCagag < 1:5997724/93‑1 (MQ=255)
cGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCAGAgc < 1:4812669/93‑1 (MQ=255)
gCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCAGAGcgcg > 1:859153/1‑93 (MQ=255)
ttACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCAGAGCGCGTaaa < 1:3351275/93‑1 (MQ=255)
ttACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCAGAGCGCGTaaa < 2:3169443/93‑1 (MQ=255)
cTGAAAGAGTGGCGGCCGGACGAAATCATCGTCCGTTTGTCCCTGAATATGGACGGCGCCGGGCCACCAATGACCTGCCA‑AGCGCGGAAAtat > 2:5110154/1‑91 (MQ=255)
gAAAGAGTGGCGGCCGGACGAAATCAACGTCGGGTTGCCGCTGAATATGGGCGGGACCGAGCAACCCTTTA‑CTGCCAGAGGGCGTAAATTTGc > 2:4521892/1‑93 (MQ=255)
agagTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCAGAGCGCGTAAATTTGCCaa < 1:6257669/93‑1 (MQ=255)
gTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCAGAGCGCGTAAATTTGCCAACCg > 1:6197385/1‑93 (MQ=255)
gTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCAGAGCGCGTAAATTTGCCAACCg < 2:1127384/93‑1 (MQ=255)
gTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCAGAGCGCGTAAATTTGCCAACCg < 2:198969/93‑1 (MQ=255)
ggcggcCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCAGAGCGCGTAAATTTGCCAACCGTa < 2:5391706/93‑1 (MQ=255)
|
TTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCAGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGA‑CTGCCAGAGCGCGTAAATTTGCCAACCGTA > NC_000913/3091586‑3091765
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCAGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCA > NC_000913/3091583‑3091769
|
GCATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTATGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGCGTGGCG > SRR4302533.969601/1‑94 (MQ=60)
GCATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCG < SRR4302533.3585884/94‑1 (MQ=60)
GCATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCG < SRR4302533.1891126/94‑1 (MQ=60)
CATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGG > SRR4302533.1034873/1‑94 (MQ=60)
CATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGG > SRR4302533.6258234/1‑94 (MQ=60)
CATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGG > SRR4302533.4601381/1‑94 (MQ=60)
TTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCC < SRR4302533.2966459/94‑1 (MQ=60)
TACCGGCGCCGCTGGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCG < SRR4302533.6065215/94‑1 (MQ=60)
TACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCG < SRR4302533.3010730/94‑1 (MQ=60)
TACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCG < SRR4302533.1759819/94‑1 (MQ=60)
ACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGC > SRR4302533.6012654/1‑94 (MQ=60)
CGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGAC < SRR4302533.3271143/94‑1 (MQ=60)
CACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGcgaca > SRR4302533.5193568/1‑89 (MQ=60)
CACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAA < SRR4302533.2452245/94‑1 (MQ=60)
CCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAT > SRR4302533.411302/1‑94 (MQ=60)
CTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCAT < SRR4302533.3202603/94‑1 (MQ=60)
TCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAaaatc > SRR4302533.3188676/1‑89 (MQ=60)
TCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATC < SRR4302533.498418/94‑1 (MQ=60)
TGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCG < SRR4302533.4668556/94‑1 (MQ=60)
CGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACATCG > SRR4302533.2869317/1‑94 (MQ=60)
GCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCCGACGAAAACATCGT > SRR4302533.2263135/1‑94 (MQ=60)
GCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGT > SRR4302533.1545969/1‑94 (MQ=60)
CCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGCGTGGCGGCCGGccgaacacctcgtc > SRR4302533.3019989/1‑80 (MQ=60)
CCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGCAATCATCGTC > SRR4302533.720420/1‑94 (MQ=60)
CCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTC < SRR4302533.2673332/94‑1 (MQ=60)
CCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAACGAGTGGCGGCCGGACGAAATCATtcttg > SRR4302533.2128193/1‑89 (MQ=60)
CCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGGCGAAAACATCGTCG > SRR4302533.298346/1‑94 (MQ=60)
CCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAacatccgcg > SRR4302533.1881165/1‑85 (MQ=60)
CCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACATCTTCG > SRR4302533.38950/1‑94 (MQ=60)
CCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATaatcaccg > SRR4302533.773667/1‑86 (MQ=60)
CTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGGAATCATtggtgg > SRR4302533.3102666/1‑88 (MQ=60)
GCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACATCGTCGGGTTG > SRR4302533.223387/1‑94 (MQ=60)
GCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTG < SRR4302533.6197271/94‑1 (MQ=60)
GCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCCGCTTG > SRR4302533.3797464/1‑94 (MQ=60)
TGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGGTTGCCG > SRR4302533.5185322/1‑94 (MQ=60)
CAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCT < SRR4302533.1515354/94‑1 (MQ=60)
AATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGCCGAAATCATCGTCGGTTTGCCGCTG < SRR4302533.1279555/94‑1 (MQ=60)
TAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATgggtcgtttgccgctgcaa > SRR4302533.2379983/1‑75 (MQ=60)
AAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGGCGCAATCATCCTCGGTTTGCCGCCGAATAT > SRR4302533.4031759/1‑94 (MQ=60)
AAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATAT < SRR4302533.4805709/94‑1 (MQ=60)
AGCACAGTACGGTACGCCGGACTGCAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATG < SRR4302533.2415920/94‑1 (MQ=60)
AGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATG < SRR4302533.2900644/94‑1 (MQ=60)
CACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGgggaaaagaacgcaggagtgaagctgaaaaacga > SRR4302533.2883509/1‑60 (MQ=60)
CACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA < SRR4302533.3313856/94‑1 (MQ=60)
ACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGAC > SRR4302533.4269474/1‑94 (MQ=60)
CAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACG < SRR4302533.4807947/94‑1 (MQ=60)
CAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACG < SRR4302533.4774692/94‑1 (MQ=60)
CAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACG < SRR4302533.3130444/94‑1 (MQ=60)
AGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGG < SRR4302533.5378697/94‑1 (MQ=60)
AGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGACGAAAaccttctcgggttgccgctgaatcagggagg > SRR4302533.3853636/1‑63 (MQ=60)
GGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGC < SRR4302533.107655/94‑1 (MQ=60)
CGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACC < SRR4302533.2589356/94‑1 (MQ=60)
GGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGACGAAAACATAGGCGGTTTGGCGCTGGATATGGgggggaccg > SRR4302533.1220129/1‑85 (MQ=60)
GGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGACGAAATCATCGTCGGGTTGTCGCTGAATATGGACGGCACCG > SRR4302533.3041269/1‑94 (MQ=60)
GTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCcg > SRR4302533.3157805/1‑92 (MQ=60)
TACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAG < SRR4302533.1228450/94‑1 (MQ=60)
TACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAG < SRR4302533.1517017/94‑1 (MQ=60)
TACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAG < SRR4302533.5196968/94‑1 (MQ=60)
CGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCA < SRR4302533.577334/94‑1 (MQ=60)
CGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCA < SRR4302533.1890809/94‑1 (MQ=60)
GCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAA < SRR4302533.6263685/94‑1 (MQ=60)
CGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACC < SRR4302533.3873606/94‑1 (MQ=60)
GGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGACGGAATCATGGTCGGTTTGCCGCTGGATATGGACGGGACCGCGCCACCA > SRR4302533.850870/1‑94 (MQ=60)
GGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCGGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCA < SRR4302533.6322339/94‑1 (MQ=60)
GGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCA > SRR4302533.807659/1‑94 (MQ=60)
GACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATTATCGTCGGTTTGCCGCTGAATATGGACGGGACCGAGCAAACAT > SRR4302533.3154073/1‑94 (MQ=60)
CTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCCAGGAAACATTG > SRR4302533.2445398/1‑94 (MQ=60)
TGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGACGAAATCATCGTCGGGTTGCCGCTGGATATGGGCGGGACCGAGGAACCATTGA > SRR4302533.1236102/1‑94 (MQ=60)
TGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGGAAACATCGTCGGGTTGCCGCTGgaatttgagggcaccgctgaaccattga > SRR4302533.3809710/1‑66 (MQ=60)
TGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGTCGCTGGATATGGACGGCcaccaggcaccattga > SRR4302533.5740045/1‑78 (MQ=60)
GGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGGATATTGAGGGCACCGAGCAACCATTGAC > SRR4302533.66502/1‑94 (MQ=60)
GGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGAC < SRR4302533.4221389/94‑1 (MQ=60)
GGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGGTTGCCGCTGCATATTGACGGCACCGAGCAAACATTGAC > SRR4302533.5881866/1‑94 (MQ=60)
GAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACT < SRR4302533.551383/94‑1 (MQ=60)
GAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACT < SRR4302533.1115822/94‑1 (MQ=60)
GAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCGAGCCACCATTGACT > SRR4302533.2338809/1‑94 (MQ=60)
AACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGTTTGGCGCTGAATATGGAAGGCAGCGAGCAACCATTtactt > SRR4302533.3110186/1‑89 (MQ=60)
AACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTG < SRR4302533.599833/94‑1 (MQ=60)
ACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGC < SRR4302533.1175026/94‑1 (MQ=60)
CATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGGATATGGACGGCACCGAGCAACCATTTACTTCC > SRR4302533.1018551/1‑94 (MQ=60)
ATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACATCGTCGGGTTGGCGCTGAATATaggcgggacccggccaccattgaattcca > SRR4302533.653697/1‑65 (MQ=47)
TTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGGAATCATCGTCGGGTTGCCGCTGAAATTGGACGGGACCGAGCAAACAATGACTACCAG > SRR4302533.3236231/1‑94 (MQ=55)
TTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAG < SRR4302533.4550283/94‑1 (MQ=60)
TATCGAGCGTTTACTGAAAGAGTGGCGGGCGGACGAAATCATAGTCGGTTTGCCGCTGGATATGGAAGGCACCGCGCAACCATTGACTGCCAGA > SRR4302533.1775106/1‑94 (MQ=60)
ATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAG < SRR4302533.2091020/94‑1 (MQ=60)
ATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCCGGATATGGACGGCACCGAGCAACCATTGACTTCCAGAG > SRR4302533.4338492/1‑94 (MQ=60)
TCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATTATTGTCGGTTTGCCGCTGCATATGGAacgcgccgcggaaacattgactgcccgagc > SRR4302533.839388/1‑64 (MQ=45)
TCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGGTTGCCGCCGAATATGGACGGCACCGAGCAACCATTTACTGCCAGAGC > SRR4302533.29548/1‑94 (MQ=60)
TCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGC < SRR4302533.6034049/94‑1 (MQ=60)
CGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGGTTGCCGCTGGATATGGACGGCACCGAGCAACCcattaattcccgagcg > SRR4302533.4369514/1‑78 (MQ=60)
CGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCG < SRR4302533.4841837/94‑1 (MQ=60)
CGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCG < SRR4302533.2149984/94‑1 (MQ=60)
GAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGC > SRR4302533.3605424/1‑94 (MQ=60)
GAGCGTTTACTGAAAGAGTGGCGGCCCGACGAAATCATCGTCGGGTTGCCGCTGAATATTGACGGCACCGAGCAACCATTTACTGCCAGAGCGC > SRR4302533.2711584/1‑94 (MQ=60)
AGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCG > SRR4302533.864187/1‑94 (MQ=60)
CGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGGCGGCACCGAGCAACCATTGACTTCCCGAGCGCGGA > SRR4302533.232183/1‑94 (MQ=60)
GTTTACTGAAAGAGTGGCGGCCGGGCGAAATAATCGTCGGGTTGCCGCTGGATATGGACGGCACCGAGCAAACATTGACTGCCAGAGCGCGGAA > SRR4302533.1856869/1‑94 (MQ=60)
GTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAA < SRR4302533.2921812/94‑1 (MQ=60)
TTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAAT < SRR4302533.3371976/94‑1 (MQ=60)
TACTGAAAGAGTGGCGGGCGGACGAAATCATTGTCGGTTTGCCGCTGAATATGGAAGGAACCGAGCCACCATTGGACGCCAGAGCGCGTACATT > SRR4302533.2679157/1‑94 (MQ=44)
TACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCCAGCAACCATTGACTGCCCGAGCGCGGAAAAT > SRR4302533.865490/1‑94 (MQ=60)
ACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCGAGCAACCCTTGACTGCCAGAGCGCGTAAATTT > SRR4302533.5126341/1‑94 (MQ=60)
CTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTG < SRR4302533.5143841/94‑1 (MQ=60)
CTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTTCCAGAGCGCGTAAATTTT > SRR4302533.1860525/1‑94 (MQ=60)
CTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGGTTGCCGCTGAATATTGACGGGACCGAGCAACCAATTACTGCCAGAGCGCGTAAATTTG > SRR4302533.2252128/1‑94 (MQ=60)
TGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGGACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGC > SRR4302533.5543741/1‑94 (MQ=60)
TGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCCAGCAACCATTTACTGCCAGAGCGCGTAAATTTTC > SRR4302533.6043926/1‑94 (MQ=60)
AAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCA < SRR4302533.203783/94‑1 (MQ=60)
AGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAAC < SRR4302533.6295091/94‑1 (MQ=60)
AGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCG > SRR4302533.6234565/1‑94 (MQ=60)
GCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATT < SRR4302533.3857117/94‑1 (MQ=60)
GCCGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATT < SRR4302533.124653/94‑1 (MQ=60)
CGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTC > SRR4302533.6231295/1‑94 (MQ=60)
GGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCA < SRR4302533.6138057/94‑1 (MQ=60)
GGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCA > SRR4302533.826160/1‑94 (MQ=60)
GGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCA > SRR4302533.5858982/1‑94 (MQ=60)
GGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCA < SRR4302533.885852/94‑1 (MQ=60)
|
GCATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCAGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCA > NC_000913/3091583‑3091769
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
