Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,403,945	T→C	V131A (GTA→GCA)	accC →	acetyl CoA carboxylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,403,945	0	T	C	100.0%	835.6 / NA	265	V131A (GTA→GCA)	accC	acetyl CoA carboxylase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (132/133); total (132/133)

Only 100 of 276 total aligned reads displayed.

TCTTCATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGTACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGCCT  >  NC_000913/3403855‑3404034

   tCATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCgg                                                                                      <  1:1294777/93‑1 (MQ=255)

    cATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCggg                                                                                     >  2:6273102/1‑93 (MQ=255)

     aTTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGt                                                                                    >  2:1046303/1‑93 (MQ=255)

      ttGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGtt                                                                                   >  2:93371/1‑93 (MQ=255)

      ttGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGtt                                                                                   <  2:563077/93‑1 (MQ=255)

        ggCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCt                                                                                 >  2:2653366/1‑93 (MQ=255)

           ccGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGAc                                                                              <  2:2921288/93‑1 (MQ=255)

                aGCAGAAACCATTCGCCTGATGGGCGCCAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGccc                                                                         <  2:5090378/93‑1 (MQ=255)

                aGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTTCGCACCGGGTTCTGACGGccc                                                                         >  1:5184257/1‑93 (MQ=255)

                 gCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATGGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCg                                                                        >  2:6114468/1‑93 (MQ=255)

                 gCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCg                                                                        >  2:1138847/1‑93 (MQ=255)

                  cAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGc                                                                       >  1:727690/1‑93 (MQ=255)

                    gAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTg                                                                     >  1:1331349/1‑93 (MQ=255)

                    gAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTg                                                                     >  1:4702493/1‑93 (MQ=255)

                    gAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTg                                                                     >  2:4540577/1‑93 (MQ=255)

                     aaaCCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAACGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTgg                                                                    <  2:1773863/93‑1 (MQ=255)

                     aaaCCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTgg                                                                    >  1:3576602/1‑93 (MQ=255)

                      aaCCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTggg                                                                   >  2:162906/1‑93 (MQ=255)

                       aCCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGc                                                                  >  2:549845/1‑93 (MQ=255)

                        ccATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGcg                                                                 <  2:1380492/93‑1 (MQ=255)

                        ccATTCGCCTGATGCGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGcg                                                                 <  1:3179861/93‑1 (MQ=255)

                          aTTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGcgac                                                               <  2:471950/93‑1 (MQ=255)

                            tCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGcgacga                                                             <  2:4237917/93‑1 (MQ=255)

                            tCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGcgacga                                                             <  1:5653523/93‑1 (MQ=255)

                             cGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGat                                                            >  2:3542071/1‑93 (MQ=255)

                             cGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGat                                                            >  2:3979028/1‑93 (MQ=255)

                              gCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGata                                                           <  2:1193786/93‑1 (MQ=255)

                              gCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGata                                                           <  1:2989667/93‑1 (MQ=255)

                              gCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGata                                                           <  2:148732/93‑1 (MQ=255)

                               ccTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGatat                                                          <  1:4195650/93‑1 (MQ=255)

                               ccTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGatat                                                          >  2:3683873/1‑93 (MQ=255)

                                cTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATg                                                         >  2:4908013/1‑93 (MQ=255)

                                 tGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATgg                                                        >  2:6002141/1‑93 (MQ=255)

                                 tGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATgg                                                        <  1:1031101/93‑1 (MQ=255)

                                 tGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGAAGGCCCGCTGGGCGACGatattg                                                        >  2:3412110/1‑91 (MQ=255)

                                  gATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGa                                                       >  1:1742569/1‑93 (MQ=255)

                                    tGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATa                                                     >  1:2604309/1‑93 (MQ=255)

                                    agggCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATa                                                     <  1:1730879/92‑1 (MQ=255)

                                     gggCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATaa                                                    >  1:5103235/1‑93 (MQ=255)

                                      ggCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATaaa                                                   <  1:578399/93‑1 (MQ=255)

                                        cGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATaaaaa                                                 >  1:3998657/1‑93 (MQ=255)

                                         gACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAAc                                                >  2:1277418/1‑93 (MQ=255)

                                         gACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAAc                                                >  1:6190843/1‑93 (MQ=255)

                                           cAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCg                                              >  2:2330061/1‑93 (MQ=255)

                                            aaaGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGt                                             <  2:2548554/93‑1 (MQ=255)

                                            aaaGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGt                                             <  1:2575224/93‑1 (MQ=255)

                                            aaaGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGt                                             >  1:49612/1‑93 (MQ=255)

                                              aGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGc                                           <  1:4455017/93‑1 (MQ=255)

                                              aGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGc                                           <  1:5251354/93‑1 (MQ=255)

                                               gTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGcc                                          <  1:4783106/93‑1 (MQ=255)

                                                 aTCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACTGTGCCAt                                        >  1:5966519/1‑93 (MQ=255)

                                                  tCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCAtt                                       <  1:5350561/93‑1 (MQ=255)

                                                     gccaTCGCGGCGATGAAGAAAGCGGGCGTCCCTGGCGCACCGGCTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCt                                    <  2:3813837/90‑1 (MQ=255)

                                                     gCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCt                                    >  1:3456955/1‑93 (MQ=255)

                                                     gCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCt                                    <  2:4448144/93‑1 (MQ=255)

                                                      cAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTa                                   >  2:3897122/1‑93 (MQ=255)

                                                        aTCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTaaa                                 >  1:3731763/1‑93 (MQ=255)

                                                         tCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAAc                                <  1:5874418/93‑1 (MQ=255)

                                                         tCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAAc                                <  1:1555864/93‑1 (MQ=255)

                                                         tCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAAc                                >  1:2460194/1‑93 (MQ=255)

                                                               cgATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTg                          <  1:2665967/93‑1 (MQ=255)

                                                               agATGAAAAAAGCGGGCGACCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTg                          <  2:5135539/92‑1 (MQ=255)

                                                                gATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTgg                         <  1:1076124/93‑1 (MQ=255)

                                                                gATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTgg                         >  1:4235149/1‑93 (MQ=255)

                                                                gATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTgg                         <  1:1989349/93‑1 (MQ=255)

                                                                 aTGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGt                        >  1:3756106/1‑93 (MQ=255)

                                                                 aTGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGt                        >  1:2841295/1‑93 (MQ=255)

                                                                 aTGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGt                        >  2:5896881/1‑93 (MQ=255)

                                                                  tGAAAAAAGCGGGCGTCCCTTGCGCACCGTGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGtt                       <  1:217217/93‑1 (MQ=255)

                                                                   gAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTa                      <  2:3498676/93‑1 (MQ=255)

                                                                     aaaaaGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATc                    <  2:5728806/93‑1 (MQ=255)

                                                                     aaaaaGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATc                    <  1:6228723/93‑1 (MQ=255)

                                                                     aaaaaGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATc                    >  2:5768165/1‑93 (MQ=255)

                                                                      aaaaGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATcc                   <  1:5000696/93‑1 (MQ=255)

                                                                       aaaGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCg                  <  1:1346881/93‑1 (MQ=255)

                                                                         aGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGt                >  1:5401206/1‑93 (MQ=255)

                                                                         aGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGt                <  1:2307622/93‑1 (MQ=255)

                                                                          gCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTg               >  2:3137965/1‑93 (MQ=255)

                                                                           cGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGa              <  1:5871322/93‑1 (MQ=255)

                                                                            gggCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGAt             <  2:4081703/93‑1 (MQ=255)

                                                                            gggCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGAt             >  2:5310103/1‑93 (MQ=255)

                                                                             ggCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCCTTGGTTATCCGGTGAtt            >  1:1202699/1‑93 (MQ=255)

                                                                             ggCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGAtt            >  2:4387333/1‑93 (MQ=255)

                                                                             ggCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGAtt            <  1:3344889/93‑1 (MQ=255)

                                                                              gCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTa           <  2:5225982/93‑1 (MQ=255)

                                                                                gTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATc         >  1:3064081/1‑93 (MQ=255)

                                                                                 tCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCa        >  1:1637216/1‑93 (MQ=255)

                                                                                 tCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCa        >  2:2170700/1‑93 (MQ=255)

                                                                                 tCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCa        >  1:1769812/1‑93 (MQ=255)

                                                                                 tCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCa        >  1:3926806/1‑93 (MQ=255)

                                                                                  cccTTGCGCGCCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCaa       <  1:4655023/93‑1 (MQ=255)

                                                                                   ccTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCaaa      <  1:5513335/93‑1 (MQ=255)

                                                                                   ccTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCaaa      <  2:2499192/93‑1 (MQ=255)

                                                                                   ccTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCaaa      <  2:815572/93‑1 (MQ=255)

                                                                                   ccTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGAGTATCaaa      >  2:1911609/1‑93 (MQ=255)

                                                                                    cTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAg     >  1:756865/1‑93 (MQ=255)

                                                                                     ttGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGc    <  1:950624/93‑1 (MQ=255)

                                                                                     ttGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGc    >  2:2124712/1‑93 (MQ=255)

                                                                                      tGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGcc   <  2:5372564/93‑1 (MQ=255)

                                                                                      tGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGcc   >  2:746896/1‑93 (MQ=255)

TCTTCATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGTACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGCCT  >  NC_000913/3403855‑3404034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TATCTTCATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGTACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGCCTCCGG  >  NC_000913/3403853‑3404038

TATCTTCATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCA                                                                                              >  SRR4302533.796092/1‑94 (MQ=60)

TATCTTCATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCA                                                                                              >  SRR4302533.5093089/1‑94 (MQ=60)

 ATCTTCATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCAC                                                                                             >  SRR4302533.231482/1‑94 (MQ=60)

   CTTCATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCG                                                                                           <  SRR4302533.2654373/94‑1 (MQ=60)

   CTTCATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCG                                                                                           >  SRR4302533.4701491/1‑94 (MQ=60)

   CTTCATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCG                                                                                           <  SRR4302533.5907834/94‑1 (MQ=60)

     TCATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGG                                                                                         <  SRR4302533.1302571/94‑1 (MQ=60)

      CATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGT                                                                                        >  SRR4302533.467853/1‑94 (MQ=60)

      CATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGT                                                                                        >  SRR4302533.1775952/1‑94 (MQ=60)

       ATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTT                                                                                       >  SRR4302533.169208/1‑94 (MQ=60)

          GGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTG                                                                                    >  SRR4302533.153398/1‑94 (MQ=60)

           GCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCACGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGA                                                                                   >  SRR4302533.5724837/1‑94 (MQ=60)

             CCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACG                                                                                 <  SRR4302533.3939504/94‑1 (MQ=60)

             CCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACG                                                                                 >  SRR4302533.5080648/1‑94 (MQ=60)

             CCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACG                                                                                 >  SRR4302533.1349815/1‑94 (MQ=60)

              CGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGG                                                                                >  SRR4302533.3853618/1‑94 (MQ=60)

               GAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGC                                                                               >  SRR4302533.1936657/1‑94 (MQ=60)

                AAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCC                                                                              >  SRR4302533.2972973/1‑94 (MQ=60)

                 AAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTTCGCACCGGGTTCTGACGGCCC                                                                             >  SRR4302533.5215554/1‑94 (MQ=60)

                 AAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCC                                                                             >  SRR4302533.4872550/1‑94 (MQ=60)

                  AGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCG                                                                            <  SRR4302533.1072291/94‑1 (MQ=60)

                  AGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCG                                                                            <  SRR4302533.346267/94‑1 (MQ=60)

                  AGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCG                                                                            <  SRR4302533.3773251/94‑1 (MQ=60)

                  AGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCG                                                                            >  SRR4302533.2574850/1‑94 (MQ=60)

                   GCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGC                                                                           >  SRR4302533.731988/1‑94 (MQ=60)

                    CAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCT                                                                          <  SRR4302533.3966169/94‑1 (MQ=60)

                    CAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCT                                                                          <  SRR4302533.541383/94‑1 (MQ=60)

                    CAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCT                                                                          <  SRR4302533.6325828/94‑1 (MQ=60)

                     AGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTG                                                                         >  SRR4302533.4731002/1‑94 (MQ=60)

                     AGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTG                                                                         >  SRR4302533.6168752/1‑94 (MQ=60)

                     AGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTG                                                                         <  SRR4302533.1337483/94‑1 (MQ=60)

                     AGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTG                                                                         >  SRR4302533.1339336/1‑94 (MQ=60)

                     AGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTG                                                                         >  SRR4302533.321291/1‑94 (MQ=60)

                      GAAACCCTTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGG                                                                        <  SRR4302533.3263814/94‑1 (MQ=60)

                      GAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGG                                                                        >  SRR4302533.3598645/1‑94 (MQ=60)

                       AAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGG                                                                       <  SRR4302533.5601095/94‑1 (MQ=60)

                        AACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGC                                                                      <  SRR4302533.6225599/94‑1 (MQ=60)

                         ACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCG                                                                     >  SRR4302533.313440/1‑94 (MQ=60)

                          CCATTCGCCTGATGCGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGA                                                                    <  SRR4302533.3199421/94‑1 (MQ=60)

                           CATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGAC                                                                   <  SRR4302533.1866454/94‑1 (MQ=60)

                           CATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGACCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGAC                                                                   <  SRR4302533.5302565/94‑1 (MQ=60)

                            ATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACG                                                                  <  SRR4302533.6239794/94‑1 (MQ=60)

                            ATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACG                                                                  >  SRR4302533.2146841/1‑94 (MQ=60)

                              TCGCCTGATGGGGGCCAAAGTATCCGCAATCCCGGCGATGAAAACAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGAT                                                                <  SRR4302533.444760/94‑1 (MQ=60)

                              TCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGAT                                                                <  SRR4302533.5687694/94‑1 (MQ=60)

                                GCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATAT                                                              <  SRR4302533.5256293/94‑1 (MQ=60)

                                GCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATAT                                                              <  SRR4302533.3007954/94‑1 (MQ=60)

                                GCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATAT                                                              <  SRR4302533.4778677/94‑1 (MQ=60)

                                 CCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATG                                                             <  SRR4302533.4221047/94‑1 (MQ=60)

                                 CCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATG                                                             >  SRR4302533.205598/1‑94 (MQ=60)

                                 CCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATG                                                             >  SRR4302533.2739238/1‑94 (MQ=60)

                                  CTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAGAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGG                                                            >  SRR4302533.5205626/1‑94 (MQ=60)

                                  CTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGG                                                            <  SRR4302533.2702971/94‑1 (MQ=60)

                                   TGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGA                                                           <  SRR4302533.1037166/94‑1 (MQ=60)

                                   TGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGA                                                           <  SRR4302533.1651794/94‑1 (MQ=60)

                                   TGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGA                                                           >  SRR4302533.1753163/1‑94 (MQ=60)

                                    GATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGAT                                                          <  SRR4302533.4255260/94‑1 (MQ=60)

                                     ATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATA                                                         >  SRR4302533.2620306/1‑94 (MQ=60)

                                     ATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATA                                                         >  SRR4302533.81647/1‑94 (MQ=60)

                                      TGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAA                                                        >  SRR4302533.5134063/1‑94 (MQ=60)

                                      AGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAA                                                        <  SRR4302533.1741374/94‑1 (MQ=60)

                                        GGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAA                                                      <  SRR4302533.581809/94‑1 (MQ=60)

                                         GCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAA                                                     >  SRR4302533.2897248/1‑94 (MQ=60)

                                         GCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAA                                                     >  SRR4302533.4023000/1‑94 (MQ=60)

                                          CGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAAC                                                    >  SRR4302533.5225540/1‑94 (MQ=60)

                                          CGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAAC                                                    >  SRR4302533.6227994/1‑94 (MQ=60)

                                           GACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACC                                                   >  SRR4302533.4588601/1‑94 (MQ=60)

                                             CAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGT                                                 >  SRR4302533.49954/1‑94 (MQ=60)

                                             CAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGG                                                 >  SRR4302533.351395/1‑94 (MQ=60)

                                              AAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTG                                                <  SRR4302533.2591066/94‑1 (MQ=60)

                                              AAAGTATCCGCAATCGCGGCGATGAAAAAAGCGCGCGTCCCTTGCGCACCGGGTTCTGGCTGCCCGCTGGGCGACGATATAGATAAAAACCGTG                                                >  SRR4302533.1027941/1‑94 (MQ=60)

                                               AAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGC                                               <  SRR4302533.4722073/94‑1 (MQ=60)

                                                AGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCC                                              <  SRR4302533.4481954/94‑1 (MQ=60)

                                                AGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCC                                              <  SRR4302533.5282907/94‑1 (MQ=60)

                                                 GTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCA                                             <  SRR4302533.4812083/94‑1 (MQ=60)

                                                  TATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACTGTGCCAT                                            >  SRR4302533.6002636/1‑94 (MQ=60)

                                                   ATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATT                                           <  SRR4302533.1222613/94‑1 (MQ=60)

                                                   ATCCGCAATCGCGGCGATAAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATT                                           <  SRR4302533.2597886/94‑1 (MQ=60)

                                                    TCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTG                                          <  SRR4302533.5382668/94‑1 (MQ=60)

                                                    TCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTG                                          >  SRR4302533.5974820/1‑94 (MQ=60)

                                                      CGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCT                                        >  SRR4302533.3478298/1‑94 (MQ=60)

                                                      CGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCT                                        <  SRR4302533.1083414/94‑1 (MQ=60)

                                                       GCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTA                                       <  SRR4302533.5287249/94‑1 (MQ=60)

                                                         AATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAA                                     >  SRR4302533.3754652/1‑94 (MQ=60)

                                                          ATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCTCCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAAC                                    <  SRR4302533.5865855/94‑1 (MQ=60)

                                                          ATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAAC                                    >  SRR4302533.2475377/1‑94 (MQ=60)

                                                           TCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACG                                   <  SRR4302533.5909926/94‑1 (MQ=60)

                                                           TCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACG                                   <  SRR4302533.1565229/94‑1 (MQ=60)

                                                               GGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATT                               <  SRR4302533.259580/94‑1 (MQ=60)

                                                               GGCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATT                               <  SRR4302533.2467613/94‑1 (MQ=60)

                                                                GCGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTG                              <  SRR4302533.554337/94‑1 (MQ=60)

                                                                 CGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGG                             <  SRR4302533.2682324/94‑1 (MQ=60)

                                                                 CGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGG                             >  SRR4302533.1482944/1‑94 (MQ=60)

                                                                 CGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGG                             >  SRR4302533.4260737/1‑94 (MQ=60)

                                                                 CGATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGG                             >  SRR4302533.4118230/1‑94 (MQ=60)

                                                                  GATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGT                            <  SRR4302533.2001525/94‑1 (MQ=60)

                                                                  GATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGT                            <  SRR4302533.1759378/94‑1 (MQ=60)

                                                                  GATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGT                            >  SRR4302533.2858780/1‑94 (MQ=60)

                                                                  GATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGT                            >  SRR4302533.4186267/1‑94 (MQ=60)

                                                                  GATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGT                            <  SRR4302533.1082467/94‑1 (MQ=60)

                                                                  GATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGT                            >  SRR4302533.3779130/1‑94 (MQ=60)

                                                                   ATGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTT                           >  SRR4302533.4984712/1‑94 (MQ=60)

                                                                    TGAAAAAAGCGGGCGTCCCTTGCGCACCGTGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTA                          <  SRR4302533.218579/94‑1 (MQ=60)

                                                                    TGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTA                          >  SRR4302533.1745785/1‑94 (MQ=60)

                                                                    TGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTA                          <  SRR4302533.5934844/94‑1 (MQ=60)

                                                                    TGAAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTA                          <  SRR4302533.3991901/94‑1 (MQ=60)

                                                                      AAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATC                        <  SRR4302533.1213993/94‑1 (MQ=60)

                                                                      AAAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATC                        >  SRR4302533.585115/1‑94 (MQ=60)

                                                                       AAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCC                       <  SRR4302533.6266034/94‑1 (MQ=60)

                                                                       AAAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCC                       <  SRR4302533.1120383/94‑1 (MQ=60)

                                                                        AAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCG                      >  SRR4302533.1621289/1‑94 (MQ=60)

                                                                        AAAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCG                      <  SRR4302533.5031009/94‑1 (MQ=60)

                                                                         AAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGG                     >  SRR4302533.339348/1‑94 (MQ=60)

                                                                         AAAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGG                     <  SRR4302533.1354985/94‑1 (MQ=60)

                                                                          AAGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGT                    >  SRR4302533.5433663/1‑94 (MQ=60)

                                                                           AGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTG                   <  SRR4302533.5026546/94‑1 (MQ=60)

                                                                           AGCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTG                   <  SRR4302533.2321916/94‑1 (MQ=60)

                                                                            GCGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGA                  <  SRR4302533.5806029/94‑1 (MQ=60)

                                                                             CGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGAT                 <  SRR4302533.3619812/94‑1 (MQ=60)

                                                                             CGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGAT                 <  SRR4302533.5906808/94‑1 (MQ=60)

                                                                             CGGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGAT                 <  SRR4302533.2551824/94‑1 (MQ=60)

                                                                              GGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCCTTGGTTATCCGGTGATT                >  SRR4302533.1209927/1‑94 (MQ=60)

                                                                              GGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATT                >  SRR4302533.5557070/1‑94 (MQ=60)

                                                                              GGGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATT                >  SRR4302533.730535/1‑94 (MQ=60)

                                                                               GGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTA               <  SRR4302533.952680/94‑1 (MQ=60)

                                                                               GGCGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTA               <  SRR4302533.3365556/94‑1 (MQ=60)

                                                                                 CGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATC             >  SRR4302533.5039977/1‑94 (MQ=60)

                                                                                 CGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATC             >  SRR4302533.3082896/1‑94 (MQ=60)

                                                                                 CGTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATC             >  SRR4302533.6252788/1‑94 (MQ=60)

                                                                                  GTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCA            >  SRR4302533.3950778/1‑94 (MQ=60)

                                                                                  GTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCA            >  SRR4302533.1780588/1‑94 (MQ=60)

                                                                                  GTCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCA            >  SRR4302533.1647130/1‑94 (MQ=60)

                                                                                   TCCCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAA           <  SRR4302533.757265/94‑1 (MQ=60)

                                                                                    CCCTTGCGCGCCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAA          <  SRR4302533.4683234/94‑1 (MQ=60)

                                                                                     CCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAG         <  SRR4302533.5030647/94‑1 (MQ=60)

                                                                                     CCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAG         <  SRR4302533.5546617/94‑1 (MQ=60)

                                                                                     CCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAG         >  SRR4302533.761319/1‑94 (MQ=60)

                                                                                     CCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAG         >  SRR4302533.4365940/1‑94 (MQ=60)

                                                                                     CCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAG         <  SRR4302533.3075549/94‑1 (MQ=60)

                                                                                     CCTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACCATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAG         >  SRR4302533.3035428/1‑94 (MQ=60)

                                                                                      CTTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGC        <  SRR4302533.1336623/94‑1 (MQ=60)

                                                                                       TTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGCC       <  SRR4302533.3665787/94‑1 (MQ=60)

                                                                                       TTGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGCC       <  SRR4302533.956206/94‑1 (MQ=60)

                                                                                        TGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGCCT      >  SRR4302533.539733/1‑94 (MQ=60)

                                                                                        TGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGCCT      <  SRR4302533.2469207/94‑1 (MQ=60)

                                                                                        TGCGCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGCCT      <  SRR4302533.3584306/94‑1 (MQ=60)

                                                                                           GCACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGCCTCCG   >  SRR4302533.1768405/1‑94 (MQ=60)

                                                                                            CACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGCCTCCGG  >  SRR4302533.6150018/1‑94 (MQ=60)

                                                                                            CACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGCCTCCGG  >  SRR4302533.1338155/1‑94 (MQ=60)

TATCTTCATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGTACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGCATTGGTTATCCGGTGATTATCAAAGCCTCCGG  >  NC_000913/3403853‑3404038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`