Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,411,069 T→C T12A (ACC→GCC)  envR ← putative transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,411,0690TC100.0% 552.2 / NA 168T12A (ACC→GCC) envRputative transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (17/151);  total (17/151)

Only 100 of 172 total aligned reads displayed.

TAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGT  >  NC_000913/3410979‑3411158
                                                                                          |                                                                                         
tAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCt                                                                                         <  2:2258612/93‑1 (MQ=255)
tAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCt                                                                                         >  1:75331/1‑93 (MQ=255)
tAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCt                                                                                         <  1:1726207/93‑1 (MQ=255)
 aGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCtt                                                                                        <  2:2394153/93‑1 (MQ=255)
  gcggcgTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTc                                                                                       <  2:56802/93‑1 (MQ=255)
  gcggcgTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTc                                                                                       <  1:4855318/93‑1 (MQ=255)
  gcggcgTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTc                                                                                       <  1:2010736/93‑1 (MQ=255)
  gcggcgTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTc                                                                                       <  1:3759655/93‑1 (MQ=255)
  gcggcgTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCAATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTc                                                                                       <  2:6001477/93‑1 (MQ=255)
   cggcgTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCa                                                                                      <  1:3656118/93‑1 (MQ=255)
     gcgTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCaga                                                                                    <  1:4390972/93‑1 (MQ=255)
     gcgTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCaga                                                                                    <  2:4973390/93‑1 (MQ=255)
         cGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCtt                                                                                <  1:3624740/93‑1 (MQ=255)
         cGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCtt                                                                                <  1:3081353/93‑1 (MQ=255)
         cGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCtt                                                                                <  1:1588321/93‑1 (MQ=255)
          ggCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTc                                                                               <  2:3207367/93‑1 (MQ=255)
          ggCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTc                                                                               >  2:3600594/1‑93 (MQ=255)
          ggCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTc                                                                               <  1:5944215/93‑1 (MQ=255)
          ggCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTc                                                                               <  2:3643913/93‑1 (MQ=255)
           gCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCg                                                                              <  1:4816829/93‑1 (MQ=255)
           gCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCg                                                                              <  2:4434853/93‑1 (MQ=255)
              aTGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCt                                                                           >  1:2247824/1‑93 (MQ=255)
              aTGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCt                                                                           <  1:2182536/93‑1 (MQ=255)
               tGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCtt                                                                          <  2:3989482/93‑1 (MQ=255)
                gTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCttt                                                                         <  2:4311170/93‑1 (MQ=255)
                 tCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTg                                                                        <  1:5059598/93‑1 (MQ=255)
                 tCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTg                                                                        <  2:5052585/93‑1 (MQ=255)
                    ttGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGtt                                                                     <  1:5211608/93‑1 (MQ=255)
                     tGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTc                                                                    >  2:3839707/1‑93 (MQ=255)
                      gAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACGGGGCGATGGCAGTTTCAATGAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCt                                                                   <  1:100398/93‑1 (MQ=255)
                       aGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCtt                                                                  <  2:4323001/93‑1 (MQ=255)
                         cgtcgtCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCtttt                                                                <  1:2757011/93‑1 (MQ=255)
                         cgtcgtCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCtttt                                                                <  1:48741/93‑1 (MQ=255)
                         cgtcgtCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCtttt                                                                <  1:563350/93‑1 (MQ=255)
                          gtcgtcTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCttttt                                                               >  2:2482205/1‑93 (MQ=255)
                          gtcgtcTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCttttt                                                               <  2:3571160/93‑1 (MQ=255)
                          gtcgtcTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCttttt                                                               >  1:2472851/1‑93 (MQ=255)
                          gtcgtcTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCttttt                                                               <  1:2412274/93‑1 (MQ=255)
                          gtcgtcTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCttttt                                                               <  1:530462/93‑1 (MQ=255)
                             gtcTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGcc                                                            >  2:2974065/1‑93 (MQ=255)
                              tcTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCa                                                           <  1:4116348/93‑1 (MQ=255)
                              tcTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCa                                                           <  1:3295013/93‑1 (MQ=255)
                                  gCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGat                                                       <  1:4504189/93‑1 (MQ=255)
                                   cTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGatt                                                      <  1:5019342/93‑1 (MQ=255)
                                   cTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGatt                                                      >  2:6248708/1‑93 (MQ=255)
                                    ttACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGatta                                                     <  2:1542025/93‑1 (MQ=255)
                                    ttACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGatta                                                     >  2:721613/1‑93 (MQ=255)
                                     tACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGattaa                                                    <  1:1375162/93‑1 (MQ=255)
                                       cGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGattaatt                                                  <  2:2534637/93‑1 (MQ=255)
                                       cGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGattaatt                                                  <  2:1625042/93‑1 (MQ=255)
                                        gCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGattaatta                                                 <  2:3700459/93‑1 (MQ=255)
                                         ccATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAattat                                                <  1:2086730/93‑1 (MQ=255)
                                           aTGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTc                                              >  2:5744403/1‑93 (MQ=255)
                                           aTGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTc                                              <  2:1730782/93‑1 (MQ=255)
                                            tgctgcGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCa                                             <  2:420778/93‑1 (MQ=255)
                                            tgctgcGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCa                                             <  2:2015623/93‑1 (MQ=255)
                                              ctgcGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAgg                                           >  1:827652/1‑93 (MQ=255)
                                                gcgcAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGaa                                         <  1:4055847/93‑1 (MQ=255)
                                                 cgcAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGaaa                                        <  2:3416221/93‑1 (MQ=255)
                                                 cgcAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGaaa                                        <  1:184274/93‑1 (MQ=255)
                                                     aaCTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGaaataaa                                    <  1:1339778/93‑1 (MQ=255)
                                                      aCTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGaaataaat                                   <  2:1011959/93‑1 (MQ=255)
                                                       cTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAaataaata                                  <  1:5898086/93‑1 (MQ=255)
                                                        tGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAatat                                 <  1:4448372/93‑1 (MQ=255)
                                                         gggCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAatata                                <  2:1426021/93‑1 (MQ=255)
                                                         gggCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAatata                                <  1:2279698/93‑1 (MQ=255)
                                                         gggCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAatata                                <  2:4359049/93‑1 (MQ=255)
                                                           gCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATAtt                              <  2:6301905/93‑1 (MQ=255)
                                                            cGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTc                             <  2:3472041/93‑1 (MQ=255)
                                                             gATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCg                            <  1:2292262/93‑1 (MQ=255)
                                                              aTGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGa                           <  2:4713438/93‑1 (MQ=255)
                                                                  cAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGAcaca                       <  1:4208423/93‑1 (MQ=255)
                                                                   aGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACag                      <  2:5809121/93‑1 (MQ=255)
                                                                    gTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACaga                     <  1:3612741/93‑1 (MQ=255)
                                                                    gTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACaga                     <  1:2919838/93‑1 (MQ=255)
                                                                     tttCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACagag                    <  2:5257672/93‑1 (MQ=255)
                                                                        cAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTga                 <  1:2504324/93‑1 (MQ=255)
                                                                        cAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTga                 <  2:627756/93‑1 (MQ=255)
                                                                        cAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTCGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTga                 <  1:5089168/93‑1 (MQ=255)
                                                                         aaTCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTgag                <  2:1006935/93‑1 (MQ=255)
                                                                          aTCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTgaga               <  1:4741461/93‑1 (MQ=255)
                                                                           tCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGATTGAGaa              <  2:5241266/93‑1 (MQ=255)
                                                                            cAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGaaa             <  1:2295871/93‑1 (MQ=255)
                                                                              gTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTGTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAAt           <  1:2177198/93‑1 (MQ=255)
                                                                               ttCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATa          <  2:4906017/93‑1 (MQ=255)
                                                                                 ttcgCCGGGCCGTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGc        <  1:5179529/90‑1 (MQ=255)
                                                                                 cTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGc        <  2:1687176/93‑1 (MQ=255)
                                                                                 cTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGc        <  2:2847769/93‑1 (MQ=255)
                                                                                 cTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGc        <  1:929339/93‑1 (MQ=255)
                                                                                  ttGCCGGGCTTTCAGAGCTACGGCTTTGTTTCTTTTTGCCATTATAAATTATTCATTAAATAAATATATTCGACACAGAGTGAGAAAATAGCg       <  2:543064/93‑1 (MQ=255)
                                                                                  ttGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCg       <  2:3123222/93‑1 (MQ=255)
                                                                                   tGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGa      <  2:1501297/93‑1 (MQ=255)
                                                                                    tccGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGaa     <  1:5261258/92‑1 (MQ=255)
                                                                                    gCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGaa     <  1:1012823/93‑1 (MQ=255)
                                                                                    gCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGaa     <  2:1953265/93‑1 (MQ=255)
                                                                                     ccGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAg    <  1:1385524/93‑1 (MQ=255)
                                                                                     ccGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAg    <  1:189836/93‑1 (MQ=255)
                                                                                     ccGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAg    >  1:6260210/1‑93 (MQ=255)
                                                                                      cGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAgg   <  1:704491/93‑1 (MQ=255)
                                                                                       gggCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGt  <  2:3333847/93‑1 (MQ=255)
                                                                                          |                                                                                         
TAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGT  >  NC_000913/3410979‑3411158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAAT  >  NC_000913/3410976‑3411162
                                                                                             |                                                                                             
CGTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGC                                                                                               <  SRR4302533.4704520/94‑1 (MQ=60)
 GTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCC                                                                                              >  SRR4302533.1478695/1‑94 (MQ=60)
 GTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCC                                                                                              <  SRR4302533.3285032/94‑1 (MQ=60)
  TTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCT                                                                                             <  SRR4302533.631053/94‑1 (MQ=60)
  TTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCT                                                                                             >  SRR4302533.75820/1‑94 (MQ=60)
   TAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTT                                                                                            <  SRR4302533.1736680/94‑1 (MQ=60)
    AGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTC                                                                                           <  SRR4302533.4573306/94‑1 (MQ=60)
     GCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCA                                                                                          <  SRR4302533.1353604/94‑1 (MQ=60)
     GCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCA                                                                                          <  SRR4302533.3782702/94‑1 (MQ=60)
     GCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCA                                                                                          <  SRR4302533.2023124/94‑1 (MQ=60)
     GCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCA                                                                                          <  SRR4302533.4884742/94‑1 (MQ=60)
      CGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAG                                                                                         <  SRR4302533.3678591/94‑1 (MQ=60)
      CGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAG                                                                                         >  SRR4302533.6110941/1‑94 (MQ=60)
       GGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGA                                                                                        >  SRR4302533.2081857/1‑94 (MQ=60)
       GGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGA                                                                                        <  SRR4302533.728386/94‑1 (MQ=60)
       GGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGA                                                                                        <  SRR4302533.2195419/94‑1 (MQ=60)
        GCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAG                                                                                       <  SRR4302533.4417480/94‑1 (MQ=60)
           TCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTT                                                                                    <  SRR4302533.2810287/94‑1 (MQ=60)
           TCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTT                                                                                    <  SRR4302533.2549636/94‑1 (MQ=60)
           TCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTT                                                                                    <  SRR4302533.2495799/94‑1 (MQ=60)
            CGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTC                                                                                   <  SRR4302533.3100257/94‑1 (MQ=60)
            CGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTC                                                                                   <  SRR4302533.3647044/94‑1 (MQ=60)
            CGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTC                                                                                   <  SRR4302533.1597922/94‑1 (MQ=60)
             GGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCG                                                                                  <  SRR4302533.5980164/94‑1 (MQ=60)
              GCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGG                                                                                 <  SRR4302533.2263560/94‑1 (MQ=60)
              GCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGG                                                                                 <  SRR4302533.4846024/94‑1 (MQ=60)
              GCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGG                                                                                 <  SRR4302533.2307766/94‑1 (MQ=60)
                AATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCT                                                                               >  SRR4302533.2261717/1‑94 (MQ=60)
                 ATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTT                                                                              <  SRR4302533.2195990/94‑1 (MQ=60)
                    TCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGG                                                                           <  SRR4302533.4202826/94‑1 (MQ=60)
                    TCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGG                                                                           <  SRR4302533.5090173/94‑1 (MQ=60)
                       TTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTC                                                                        <  SRR4302533.3630341/94‑1 (MQ=60)
                       TTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTC                                                                        <  SRR4302533.5242994/94‑1 (MQ=60)
                        TGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCT                                                                       <  SRR4302533.2011652/94‑1 (MQ=60)
                        TGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCT                                                                       <  SRR4302533.5066684/94‑1 (MQ=60)
                        TGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCT                                                                       <  SRR4302533.5139112/94‑1 (MQ=60)
                         GAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACGGGGCGATGGCAGTTTCAATGAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTT                                                                      <  SRR4302533.101024/94‑1 (MQ=60)
                           GCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTT                                                                    <  SRR4302533.5331042/94‑1 (MQ=60)
                            CGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTT                                                                   <  SRR4302533.566689/94‑1 (MQ=60)
                            CGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTT                                                                   <  SRR4302533.3218631/94‑1 (MQ=60)
                            CGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTT                                                                   <  SRR4302533.49079/94‑1 (MQ=60)
                            CGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTT                                                                   <  SRR4302533.2773917/94‑1 (MQ=60)
                            CGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTT                                                                   >  SRR4302533.2488100/1‑94 (MQ=60)
                             GTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTG                                                                  <  SRR4302533.533618/94‑1 (MQ=60)
                             GTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTG                                                                  <  SRR4302533.2427174/94‑1 (MQ=60)
                                 TCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCAT                                                              <  SRR4302533.3315350/94‑1 (MQ=60)
                                 TCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCAT                                                              <  SRR4302533.4141355/94‑1 (MQ=60)
                                 TCTTGCTTACCCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCAT                                                              <  SRR4302533.698996/94‑1 (MQ=60)
                                  CTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATG                                                             <  SRR4302533.3992194/94‑1 (MQ=60)
                                    TGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGAT                                                           <  SRR4302533.5430755/94‑1 (MQ=60)
                                     GCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATT                                                          <  SRR4302533.4531474/94‑1 (MQ=60)
                                     GCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATT                                                          <  SRR4302533.4436890/94‑1 (MQ=60)
                                      CTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTA                                                         <  SRR4302533.5049743/94‑1 (MQ=60)
                                        TACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAAT                                                       <  SRR4302533.1383435/94‑1 (MQ=60)
                                            CCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATT                                                   <  SRR4302533.2099580/94‑1 (MQ=60)
                                              ATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCA                                                 <  SRR4302533.893371/94‑1 (MQ=60)
                                                GCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGG                                               >  SRR4302533.832508/1‑94 (MQ=60)
                                                 CTGCGCAAACTGGGCGATGTCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGA                                              <  SRR4302533.4902465/94‑1 (MQ=60)
                                                  TGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAA                                             <  SRR4302533.5234066/94‑1 (MQ=60)
                                                  TGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAA                                             <  SRR4302533.1846344/94‑1 (MQ=60)
                                                   GCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAA                                            <  SRR4302533.4080538/94‑1 (MQ=60)
                                                    CGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAAT                                           <  SRR4302533.185420/94‑1 (MQ=60)
                                                        AACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAAT                                       <  SRR4302533.1347842/94‑1 (MQ=60)
                                                         ACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATA                                      <  SRR4302533.4956725/94‑1 (MQ=60)
                                                          CTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATAT                                     <  SRR4302533.5933706/94‑1 (MQ=60)
                                                           TGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATA                                    <  SRR4302533.4475275/94‑1 (MQ=60)
                                                            GGTCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATAT                                   <  SRR4302533.364331/94‑1 (MQ=60)
                                                            GGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATAT                                   <  SRR4302533.2293815/94‑1 (MQ=60)
                                                             GGCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATT                                  <  SRR4302533.5920762/94‑1 (MQ=60)
                                                              GCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTC                                 <  SRR4302533.2214544/94‑1 (MQ=60)
                                                              GCGATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTC                                 <  SRR4302533.1440665/94‑1 (MQ=60)
                                                                GATGGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGA                               <  SRR4302533.2306454/94‑1 (MQ=60)
                                                                   GGCAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACAC                            >  SRR4302533.124137/1‑94 (MQ=60)
                                                                     CAGTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAG                          <  SRR4302533.4233884/94‑1 (MQ=60)
                                                                       GTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAG                        <  SRR4302533.2937728/94‑1 (MQ=60)
                                                                       GTTTCAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAG                        <  SRR4302533.3634976/94‑1 (MQ=60)
                                                                           CAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAG                    <  SRR4302533.2519764/94‑1 (MQ=60)
                                                                           CAATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTCGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAG                    <  SRR4302533.5119916/94‑1 (MQ=60)
                                                                             ATCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAA                  <  SRR4302533.4770208/94‑1 (MQ=60)
                                                                              TCAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAA                 <  SRR4302533.2424467/94‑1 (MQ=60)
                                                                               CAGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAA                <  SRR4302533.2310088/94‑1 (MQ=60)
                                                                                AGTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAAT               <  SRR4302533.3748150/94‑1 (MQ=60)
                                                                                 GTTCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTGTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATA              <  SRR4302533.2190618/94‑1 (MQ=60)
                                                                                   TCTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGC            <  SRR4302533.957507/94‑1 (MQ=60)
                                                                                    CTTGCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCG           <  SRR4302533.934793/94‑1 (MQ=60)
                                                                                       TCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAG        <  SRR4302533.5292845/94‑1 (MQ=60)
                                                                                       GCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAG        >  SRR4302533.6297637/1‑94 (MQ=60)
                                                                                       GCCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAG        <  SRR4302533.1018753/94‑1 (MQ=60)
                                                                                        CCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGG       <  SRR4302533.4827437/94‑1 (MQ=60)
                                                                                        CCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGG       <  SRR4302533.4344727/94‑1 (MQ=60)
                                                                                        CCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGG       <  SRR4302533.191022/94‑1 (MQ=60)
                                                                                        CCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGG       <  SRR4302533.1645470/94‑1 (MQ=60)
                                                                                        CCGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGG       <  SRR4302533.1393862/94‑1 (MQ=60)
                                                                                         CGGGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGT      <  SRR4302533.708654/94‑1 (MQ=60)
                                                                                           GGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTA    <  SRR4302533.4390388/94‑1 (MQ=60)
                                                                                           GGCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTA    <  SRR4302533.1426770/94‑1 (MQ=60)
                                                                                            GCCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAA   <  SRR4302533.1690369/94‑1 (MQ=60)
                                                                                             CCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAAT  <  SRR4302533.3147235/94‑1 (MQ=60)
                                                                                             |                                                                                             
CGTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAAT  >  NC_000913/3410976‑3411162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑