Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,436,837 |
T→C |
T104A (ACC→GCC) |
yhdN ← |
hypothetical protein |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,436,837 | 0 | T | C | 99.7%
| 928.6
/ ‑5.6
| 287 | T104A (ACC→GCC) | yhdN | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (130/156); minor base A (1/0); total (131/156) |
| Fisher's exact test for biased strand distribution p-value = 4.56e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 |
Only 100 of 292 total aligned reads displayed.
CAGCTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGTACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTT > NC_000913/3436747‑3436926
|
cAGCTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCCACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCAc < 1:4550463/93‑1 (MQ=255)
aGCTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACt < 2:5165462/93‑1 (MQ=255)
cTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCa < 1:121975/93‑1 (MQ=255)
cTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCa < 2:2316439/93‑1 (MQ=255)
cTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACCCa < 2:404600/93‑1 (MQ=255)
aCCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATc < 2:6027778/93‑1 (MQ=255)
aCCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATc > 1:1525496/1‑93 (MQ=255)
ccAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATcc < 1:669595/93‑1 (MQ=255)
cAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCa > 2:2863939/1‑93 (MQ=255)
cAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCa < 1:356224/93‑1 (MQ=255)
aaTGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAg < 1:2215186/93‑1 (MQ=255)
aaTGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAg < 1:3823992/93‑1 (MQ=255)
tGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAACt > 1:1699689/1‑93 (MQ=255)
gCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCtt > 1:1660039/1‑93 (MQ=255)
gCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCtt > 2:1642546/1‑93 (MQ=255)
atacatacatacTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTc > 1:4304879/1‑93 (MQ=255)
tacatacatacTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCg > 2:340469/1‑93 (MQ=255)
acatacatacTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGc > 2:4518724/1‑93 (MQ=255)
tacatacTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGc > 2:5720433/1‑93 (MQ=255)
tacatacTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGc > 1:3323725/1‑93 (MQ=255)
tCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAAtt > 1:712987/1‑93 (MQ=255)
tCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAAtt > 1:5046194/1‑93 (MQ=255)
tCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAAtt > 2:5125061/1‑93 (MQ=255)
ccACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTc < 1:5766021/93‑1 (MQ=255)
ccACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTc < 2:4260502/93‑1 (MQ=255)
aCTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAGAATCGGCACTCAATCCAGCTTGCCGCAGCTTCAATTCCa < 2:4763234/93‑1 (MQ=255)
cTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAg > 1:2869459/1‑93 (MQ=255)
cTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAg > 1:1975847/1‑93 (MQ=255)
cTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAg < 1:4943560/93‑1 (MQ=255)
cTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAg < 1:1449682/93‑1 (MQ=255)
cTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAg > 1:4204130/1‑93 (MQ=255)
cTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAg > 1:3175570/1‑93 (MQ=255)
tAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGt > 1:4590757/1‑93 (MQ=255)
tAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGt > 1:1756829/1‑93 (MQ=255)
tAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGt < 1:4856622/93‑1 (MQ=255)
tAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGt > 1:3417988/1‑93 (MQ=255)
aGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTa < 2:3770268/93‑1 (MQ=255)
gTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTaa < 2:5297559/93‑1 (MQ=255)
gTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTaa > 2:3885960/1‑93 (MQ=255)
ttATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAAt > 2:5844198/1‑93 (MQ=255)
ttATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAAt > 1:3627528/1‑93 (MQ=255)
tATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATg < 1:2713197/93‑1 (MQ=255)
aTCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGa > 2:5942873/1‑93 (MQ=255)
cGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACa < 2:1855267/93‑1 (MQ=255)
gTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACaa < 1:3082490/93‑1 (MQ=255)
ttGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAAt < 1:5591492/93‑1 (MQ=255)
ttGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAAt < 1:5286649/93‑1 (MQ=255)
ttGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTACAGTAATGACAAt > 1:3468097/1‑93 (MQ=255)
tGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATc < 2:4348083/93‑1 (MQ=255)
tGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATc < 1:915733/93‑1 (MQ=255)
tGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATc < 2:1065540/93‑1 (MQ=255)
gATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCg > 1:1828033/1‑93 (MQ=255)
aTTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGa < 2:2737664/93‑1 (MQ=255)
ttttGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGAc < 1:5407616/93‑1 (MQ=255)
ttttGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGAc > 2:1955198/1‑93 (MQ=255)
ttttGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGAc < 2:1385468/93‑1 (MQ=255)
tttGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACg < 1:2921930/93‑1 (MQ=255)
tGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGc < 2:3462993/93‑1 (MQ=255)
gTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCt > 1:5220580/1‑93 (MQ=255)
ccAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTaa < 1:1041624/93‑1 (MQ=255)
ccAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTaa < 1:4733238/93‑1 (MQ=255)
caacaaCTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAAc > 2:1529283/1‑93 (MQ=255)
aacaacTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAAcc < 2:2064283/93‑1 (MQ=255)
caacTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACctc < 2:616310/93‑1 (MQ=255)
caacTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACctc < 2:5437832/93‑1 (MQ=255)
aacTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACctct > 1:6308872/1‑93 (MQ=255)
acTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCACTTCCAGTAATGACAATCGACGGCTGACCTCtt > 1:4007434/1‑93 (MQ=255)
acTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCtt > 2:3533512/1‑93 (MQ=255)
acTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCtt < 1:2065037/93‑1 (MQ=255)
cTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTg < 2:83242/93‑1 (MQ=255)
cTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTg < 2:5370214/93‑1 (MQ=255)
ttGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGa > 2:3349347/1‑93 (MQ=255)
ttGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGa < 2:4183477/93‑1 (MQ=255)
ttGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGa < 1:1340097/93‑1 (MQ=255)
gTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGata > 1:5721549/1‑93 (MQ=255)
cAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATAtt < 2:2995631/93‑1 (MQ=255)
cAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATAtt < 2:5508007/93‑1 (MQ=255)
cATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCg < 1:599281/93‑1 (MQ=255)
cATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCg > 2:4831458/1‑93 (MQ=255)
cATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCg < 2:775081/93‑1 (MQ=255)
cATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCg < 2:2351720/93‑1 (MQ=255)
tAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGa > 2:2565749/1‑93 (MQ=255)
tAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGa < 1:4368365/93‑1 (MQ=255)
aaTCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGat < 1:5210461/93‑1 (MQ=255)
aaTCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGat > 1:4467443/1‑93 (MQ=255)
aTCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGatc > 1:2474199/1‑93 (MQ=255)
cgccgcGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGatcat < 1:1138112/93‑1 (MQ=255)
gccgcGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGatcatg > 2:3236991/1‑92 (MQ=255)
ccgcGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCg < 1:1019218/93‑1 (MQ=255)
ccgcGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCg > 1:5933831/1‑93 (MQ=255)
ccgcGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCg < 2:2110851/93‑1 (MQ=255)
cgcgTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGt > 2:3089613/1‑93 (MQ=255)
gcgTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTg > 1:4098547/1‑93 (MQ=255)
cgTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGa < 2:1216740/93‑1 (MQ=255)
gTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAAATCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGAc > 2:2206325/1‑93 (MQ=255)
tAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACg > 1:3680501/1‑93 (MQ=255)
aaaaTCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGAt > 1:2382511/1‑93 (MQ=255)
aaaTCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATa < 1:141354/93‑1 (MQ=255)
tCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCt > 1:5457459/1‑93 (MQ=255)
cGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCtt < 1:3265851/93‑1 (MQ=255)
|
CAGCTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGTACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTT > NC_000913/3436747‑3436926
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCAGCTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGTACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTTTGAG > NC_000913/3436746‑3436930
|
CCAGCTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCAC < SRR4302533.947364/94‑1 (MQ=60)
CAGCTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCCACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACT < SRR4302533.4578057/94‑1 (MQ=60)
CAGCTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACT < SRR4302533.2503271/94‑1 (MQ=60)
CAGCTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACT > SRR4302533.5031086/1‑94 (MQ=60)
GCTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCA > SRR4302533.4072160/1‑94 (MQ=60)
CTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAA < SRR4302533.5988531/94‑1 (MQ=60)
CTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAA < SRR4302533.122744/94‑1 (MQ=60)
TCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAAT > SRR4302533.4224178/1‑94 (MQ=60)
CACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATC > SRR4302533.1534680/1‑94 (MQ=60)
CACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATC < SRR4302533.4348866/94‑1 (MQ=60)
CACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATC > SRR4302533.3640113/1‑94 (MQ=60)
ACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCC < SRR4302533.5390660/94‑1 (MQ=60)
CCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCA < SRR4302533.673554/94‑1 (MQ=60)
CCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCA < SRR4302533.3328031/94‑1 (MQ=60)
CCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCA > SRR4302533.1717107/1‑94 (MQ=60)
CAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAG < SRR4302533.358395/94‑1 (MQ=60)
CAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAG > SRR4302533.4327009/1‑94 (MQ=60)
CAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAG > SRR4302533.4282349/1‑94 (MQ=60)
AATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGC < SRR4302533.2228859/94‑1 (MQ=60)
AATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGC < SRR4302533.3847371/94‑1 (MQ=60)
ATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAACT > SRR4302533.1709991/1‑94 (MQ=60)
TGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTT > SRR4302533.1670077/1‑94 (MQ=60)
CGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGT < SRR4302533.2835854/94‑1 (MQ=60)
CGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGT > SRR4302533.49216/1‑94 (MQ=60)
GATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTC > SRR4302533.3377038/1‑94 (MQ=60)
GATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTC > SRR4302533.4330779/1‑94 (MQ=60)
ATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCG > SRR4302533.170441/1‑94 (MQ=60)
ATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCG > SRR4302533.3896880/1‑94 (MQ=60)
ATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCG < SRR4302533.4615726/94‑1 (MQ=60)
ACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCA > SRR4302533.5659348/1‑94 (MQ=60)
ACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCA > SRR4302533.3483690/1‑94 (MQ=60)
ATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGC > SRR4302533.3344252/1‑94 (MQ=60)
ATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGC < SRR4302533.3216800/94‑1 (MQ=60)
ATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGC > SRR4302533.4603046/1‑94 (MQ=60)
TACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCT < SRR4302533.552350/94‑1 (MQ=60)
TACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCT > SRR4302533.1147952/1‑94 (MQ=60)
CATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTC > SRR4302533.2916077/1‑94 (MQ=60)
ACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAAT < SRR4302533.1181395/94‑1 (MQ=60)
ACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAAT < SRR4302533.2199052/94‑1 (MQ=60)
CTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATT < SRR4302533.307555/94‑1 (MQ=60)
CTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATT > SRR4302533.1059140/1‑94 (MQ=60)
CTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATT < SRR4302533.5776719/94‑1 (MQ=60)
CTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATT > SRR4302533.5076721/1‑94 (MQ=60)
CTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATT > SRR4302533.717194/1‑94 (MQ=60)
TCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTC < SRR4302533.5247582/94‑1 (MQ=60)
CCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCC < SRR4302533.5800834/94‑1 (MQ=60)
CCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCC > SRR4302533.1631954/1‑94 (MQ=60)
CACTAGTTATCGTTTATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCA < SRR4302533.2043873/94‑1 (MQ=60)
ACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAG > SRR4302533.3195105/1‑94 (MQ=60)
ACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAG > SRR4302533.4229561/1‑94 (MQ=60)
ACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAG > SRR4302533.2887114/1‑94 (MQ=60)
ACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAG > SRR4302533.1987949/1‑94 (MQ=60)
CTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGT > SRR4302533.4618563/1‑94 (MQ=60)
CTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGT < SRR4302533.2792603/94‑1 (MQ=60)
CTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGT > SRR4302533.1441810/1‑94 (MQ=60)
CTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGT < SRR4302533.4973485/94‑1 (MQ=60)
CTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGT < SRR4302533.1458430/94‑1 (MQ=60)
CTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGT > SRR4302533.3439109/1‑94 (MQ=60)
CTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGT > SRR4302533.1767535/1‑94 (MQ=60)
TAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTA < SRR4302533.477586/94‑1 (MQ=60)
TAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTA < SRR4302533.4886054/94‑1 (MQ=60)
TAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTA < SRR4302533.1416000/94‑1 (MQ=60)
AGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAA < SRR4302533.1807758/94‑1 (MQ=60)
AGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAA > SRR4302533.3487595/1‑94 (MQ=60)
AGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAA < SRR4302533.3516162/94‑1 (MQ=60)
GTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAAT < SRR4302533.650730/94‑1 (MQ=60)
GTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAAT < SRR4302533.3666152/94‑1 (MQ=60)
GTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAAT > SRR4302533.5127987/1‑94 (MQ=60)
GTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAAT > SRR4302533.671026/1‑94 (MQ=60)
GTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAAT > SRR4302533.3649849/1‑94 (MQ=60)
TTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATG < SRR4302533.2439714/94‑1 (MQ=60)
TTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATG > SRR4302533.5105181/1‑94 (MQ=60)
TATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGA < SRR4302533.2729859/94‑1 (MQ=60)
ATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGAC < SRR4302533.3272351/94‑1 (MQ=60)
CGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAA < SRR4302533.1289087/94‑1 (MQ=60)
CGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAA > SRR4302533.420547/1‑94 (MQ=60)
CGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAA < SRR4302533.3594118/94‑1 (MQ=60)
GTTGATTTTGTCCAACAACTTGTCAGCATAATCGCGGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAAT < SRR4302533.6307188/94‑1 (MQ=60)
GTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAAT < SRR4302533.1530746/94‑1 (MQ=60)
GTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAAT > SRR4302533.3826723/1‑94 (MQ=60)
GTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAAT < SRR4302533.3101400/94‑1 (MQ=60)
GTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTACAGTAATGACAAT > SRR4302533.3489505/1‑94 (MQ=60)
TTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATC < SRR4302533.5318314/94‑1 (MQ=60)
TTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATC < SRR4302533.5405115/94‑1 (MQ=60)
TTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATC < SRR4302533.5625270/94‑1 (MQ=60)
TGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCG < SRR4302533.921113/94‑1 (MQ=60)
TGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCG > SRR4302533.1839195/1‑94 (MQ=60)
TGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCG < SRR4302533.243722/94‑1 (MQ=60)
TGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCG < SRR4302533.1441217/94‑1 (MQ=60)
TGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCA > SRR4302533.5763374/1‑94 (MQ=60)
GATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTGAATCCAGCTTGTCGCAGATTCAATTCCAGTAATGACAATCGC > SRR4302533.1880973/1‑94 (MQ=60)
GATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGA > SRR4302533.1078094/1‑94 (MQ=60)
GATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGA < SRR4302533.4395497/94‑1 (MQ=60)
GATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGA < SRR4302533.4997904/94‑1 (MQ=60)
GATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGA > SRR4302533.4923658/1‑94 (MQ=60)
ATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGAC < SRR4302533.3179845/94‑1 (MQ=60)
ATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGAC < SRR4302533.454621/94‑1 (MQ=60)
ATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGAC < SRR4302533.1612072/94‑1 (MQ=60)
TTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACG < SRR4302533.5484368/94‑1 (MQ=60)
TTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACG < SRR4302533.5440111/94‑1 (MQ=60)
TTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACG < SRR4302533.31862/94‑1 (MQ=60)
TTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGG < SRR4302533.2939823/94‑1 (MQ=60)
TGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCT > SRR4302533.233187/1‑94 (MQ=60)
TGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCT > SRR4302533.5251998/1‑94 (MQ=60)
GTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTA < SRR4302533.1672898/94‑1 (MQ=60)
TCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAA > SRR4302533.688038/1‑94 (MQ=60)
CCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAAC < SRR4302533.4761933/94‑1 (MQ=60)
CCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAAC < SRR4302533.1047748/94‑1 (MQ=60)
CCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAAC < SRR4302533.1731236/94‑1 (MQ=60)
AACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCT < SRR4302533.1259462/94‑1 (MQ=60)
AACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCT > SRR4302533.775844/1‑94 (MQ=60)
ACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTC > SRR4302533.3840647/1‑94 (MQ=60)
CAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCT > SRR4302533.1039128/1‑94 (MQ=60)
CAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCT < SRR4302533.5473307/94‑1 (MQ=60)
CAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCT > SRR4302533.6346767/1‑94 (MQ=60)
CAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCT > SRR4302533.4354133/1‑94 (MQ=60)
AACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCACTTCCAGTAATGACAATCGACGGCTGACCTCTT > SRR4302533.4031833/1‑94 (MQ=60)
AACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTT > SRR4302533.290916/1‑94 (MQ=60)
AACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATACACGGCTAACCTCTT > SRR4302533.1369824/1‑94 (MQ=60)
ACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTG < SRR4302533.3017059/94‑1 (MQ=60)
ACTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTG < SRR4302533.2077765/94‑1 (MQ=60)
CTTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGA < SRR4302533.5672128/94‑1 (MQ=60)
TTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGAT < SRR4302533.1348164/94‑1 (MQ=60)
TTGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGAT > SRR4302533.1970966/1‑94 (MQ=60)
TGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATA < SRR4302533.466409/94‑1 (MQ=60)
TGTCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATA > SRR4302533.5756094/1‑94 (MQ=60)
TCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGNAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATT < SRR4302533.1820961/94‑1 (MQ=60)
TCAGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATT < SRR4302533.4057155/94‑1 (MQ=60)
AGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGC > SRR4302533.5907824/1‑94 (MQ=60)
AGCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGC < SRR4302533.5307840/94‑1 (MQ=60)
GCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCG > SRR4302533.5568888/1‑94 (MQ=60)
GCATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCG < SRR4302533.150457/94‑1 (MQ=60)
CATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGG < SRR4302533.602808/94‑1 (MQ=60)
ATAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGA > SRR4302533.2086538/1‑94 (MQ=60)
TAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGAT < SRR4302533.717051/94‑1 (MQ=60)
TAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGAT < SRR4302533.4394736/94‑1 (MQ=60)
TAATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGAT > SRR4302533.4494461/1‑94 (MQ=60)
AATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATC < SRR4302533.5241846/94‑1 (MQ=60)
AATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATC < SRR4302533.5823160/94‑1 (MQ=60)
AATCGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATC > SRR4302533.2489456/1‑94 (MQ=60)
CGCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATC < SRR4302533.1144884/94‑1 (MQ=60)
GCCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCG > SRR4302533.5969704/1‑94 (MQ=60)
CCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGT < SRR4302533.6344158/94‑1 (MQ=60)
CCGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGT < SRR4302533.1025208/94‑1 (MQ=60)
CGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTG > SRR4302533.4123493/1‑94 (MQ=60)
CGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTG > SRR4302533.2343306/1‑94 (MQ=60)
CGCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTG < SRR4302533.3335395/94‑1 (MQ=60)
GCGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGA > SRR4302533.3902370/1‑94 (MQ=60)
CGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGAG > SRR4302533.5318082/1‑94 (MQ=60)
CGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGAC > SRR4302533.3366401/1‑94 (MQ=60)
CGTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAACGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGAC < SRR4302533.4471508/94‑1 (MQ=60)
GTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACG > SRR4302533.3703117/1‑94 (MQ=60)
GTAAAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACG > SRR4302533.2670168/1‑94 (MQ=60)
GTAAAAAAGCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACG < SRR4302533.5243095/94‑1 (MQ=60)
AAAAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGAT > SRR4302533.2397243/1‑94 (MQ=60)
AAATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATAC < SRR4302533.142258/94‑1 (MQ=60)
ATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCT < SRR4302533.4846638/94‑1 (MQ=60)
ATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCT < SRR4302533.875684/94‑1 (MQ=60)
ATCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCT > SRR4302533.5490340/1‑94 (MQ=60)
TCGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTT < SRR4302533.3689635/94‑1 (MQ=60)
CGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTTT > SRR4302533.778937/1‑94 (MQ=60)
CGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTTT < SRR4302533.4510055/94‑1 (MQ=60)
CGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTTT > SRR4302533.6131460/1‑94 (MQ=60)
CGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTTT < SRR4302533.3286005/94‑1 (MQ=60)
CGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTTT > SRR4302533.5702360/1‑94 (MQ=60)
CGGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTACGGATCATCGTGCCGGACACCTTT > SRR4302533.783483/1‑94 (MQ=60)
GGCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTTTG > SRR4302533.1748985/1‑94 (MQ=60)
GCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTTTGA < SRR4302533.3710315/94‑1 (MQ=60)
GCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTTTGA < SRR4302533.1140728/94‑1 (MQ=60)
GCACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTTTGA > SRR4302533.2624889/1‑94 (MQ=60)
CACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTTTGAG < SRR4302533.1748821/94‑1 (MQ=60)
CACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTTTGAG < SRR4302533.5138384/94‑1 (MQ=60)
CACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTTTGAG < SRR4302533.2734799/94‑1 (MQ=60)
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CCAGCTCACCAATGCGATACATACATACTCCACTAGTTATCGTTGATTTTGTCCAACAACTTGTCAGCATAATCGCCGCGTAAAAAATCGGTACTCAATCCAGCTTGTCGCAGCTTCAATTCCAGTAATGACAATCGACGGCTAACCTCTTGATATTGCGGATCATCGTGACGGATACCTTTGAG > NC_000913/3436746‑3436930
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |