Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,496,295 |
A→G |
V277V (GTA→GTG) |
cysG → |
uroporphyrinogen III methylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,496,295 | 0 | A | G | 99.6%
| 745.8
/ ‑4.1
| 237 | coding (831/1374 nt) | cysG | uroporphyrinogen III methylase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (104/132); minor base . (0/1); total (104/133) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.83e-01 |
Only 100 of 243 total aligned reads displayed.
GACCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTACCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTTATTTT > NC_000913/3496206‑3496384
|
gACCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGccc > 2:971056/1‑93 (MQ=255)
aCCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGcccc > 1:3863726/1‑93 (MQ=255)
aCCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGcccc > 2:1277815/1‑93 (MQ=255)
ccGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCa > 2:4684463/1‑93 (MQ=255)
ccGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGCGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCa > 1:927076/1‑93 (MQ=255)
cGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAg < 1:3443137/93‑1 (MQ=255)
cGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAg < 2:5598363/93‑1 (MQ=255)
cGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAg < 1:5496184/93‑1 (MQ=255)
cGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAg < 2:2938593/93‑1 (MQ=255)
gTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAgg > 2:5847527/1‑93 (MQ=255)
gTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAgg > 2:5243828/1‑93 (MQ=255)
tCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGa < 1:1901102/93‑1 (MQ=255)
tCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGa > 1:2043723/1‑93 (MQ=255)
tCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGa > 2:636894/1‑93 (MQ=255)
tCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGa > 2:4100749/1‑93 (MQ=255)
cTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGaa < 1:1745602/93‑1 (MQ=255)
tGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAag > 1:3471911/1‑93 (MQ=255)
ggTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAaga > 2:5082823/1‑93 (MQ=255)
ggTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAaga < 2:5669529/93‑1 (MQ=255)
gTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAagag < 1:1405116/93‑1 (MQ=255)
gTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAagag > 1:5646879/1‑93 (MQ=255)
tttCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAgaga < 1:5811997/93‑1 (MQ=255)
ttCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGAt < 2:3109351/93‑1 (MQ=255)
ttCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGAt < 2:1154517/93‑1 (MQ=255)
tCTGAGTATATTATGAATCTGGTACGCCGCGATGCGGCCCGTGTTTTCGTCGGCAACCGCGCGGAATACCACTGCGTGCCCCAGGAAGAGAtt < 1:2817077/93‑1 (MQ=255)
tCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGAta > 2:2366741/1‑92 (MQ=255)
cTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTa < 2:2208116/93‑1 (MQ=255)
cTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTa > 1:5602129/1‑93 (MQ=255)
gACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAAc < 2:2750747/93‑1 (MQ=255)
gACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAAc > 2:3350463/1‑93 (MQ=255)
gACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAAc > 2:3537950/1‑93 (MQ=255)
cGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCa < 2:4635750/93‑1 (MQ=255)
atatTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGa < 1:1151577/93‑1 (MQ=255)
atatTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGa < 1:6218493/93‑1 (MQ=255)
atatTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGa < 1:2804515/93‑1 (MQ=255)
atatTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGa < 2:4534364/93‑1 (MQ=255)
atatTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGa < 1:3271188/93‑1 (MQ=255)
tattatGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGAt > 2:8658/1‑93 (MQ=255)
tattatGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGAt < 2:5589488/93‑1 (MQ=255)
ttatGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATcc < 1:2963500/93‑1 (MQ=255)
ttatGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATcc < 1:4335089/93‑1 (MQ=255)
atGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCctg > 2:1220669/1‑93 (MQ=255)
gAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCctgct < 2:4518818/93‑1 (MQ=255)
gAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCctgct > 1:830783/1‑93 (MQ=255)
gAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGAGCctgct < 2:2152012/93‑1 (MQ=255)
cTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCgg < 2:2563597/93‑1 (MQ=255)
tGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCggg > 2:2878281/1‑93 (MQ=255)
tGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCggg > 1:5326948/1‑93 (MQ=255)
gTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGaa < 1:315084/93‑1 (MQ=255)
tACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGCAg > 2:4819032/1‑93 (MQ=255)
gccgcGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAgcgc < 2:5346282/93‑1 (MQ=255)
ccgcGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCa > 1:2362486/1‑93 (MQ=255)
gcgATGCGGACCGTGTTTTCGTGGGCAATCGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCaaa < 2:1640755/93‑1 (MQ=255)
gcgATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCaaa < 1:4429014/93‑1 (MQ=255)
gcgATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCaaa < 2:5897555/93‑1 (MQ=255)
gATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCaaaaa > 1:1070321/1‑93 (MQ=255)
gATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCaaaaa > 1:5389902/1‑93 (MQ=255)
aTGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCTGATCCTGCTGCGGGAAGCGCAAAAAg > 1:3364614/1‑93 (MQ=255)
aTGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAg < 2:4354254/93‑1 (MQ=255)
aTGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAg > 2:733686/1‑93 (MQ=255)
tGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAgg > 1:2722062/1‑93 (MQ=255)
tGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAgg < 1:1004254/93‑1 (MQ=255)
tGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAgg > 2:5040644/1‑93 (MQ=255)
gCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGc > 1:2159353/1‑93 (MQ=255)
gCGGACCGTGTTTTCGTCGCCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGc > 2:4039160/1‑93 (MQ=255)
gggACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCa < 1:5115546/92‑1 (MQ=255)
cGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCa > 2:6101762/1‑93 (MQ=255)
ggACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCaa > 1:4564976/1‑93 (MQ=255)
ggACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCaa > 1:3731957/1‑93 (MQ=255)
gACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCaaa > 1:4742705/1‑93 (MQ=255)
gACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCaaa < 1:4224500/93‑1 (MQ=255)
gACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCaaa > 2:3626920/1‑93 (MQ=255)
gACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCaaa < 1:2058696/93‑1 (MQ=255)
aCCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAAc > 1:1659596/1‑93 (MQ=255)
aCCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAAc > 1:2994454/1‑93 (MQ=255)
ccGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAAcg > 1:4964613/1‑93 (MQ=255)
ccGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAAcg > 2:5213685/1‑93 (MQ=255)
ccGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAAcg < 1:4678583/93‑1 (MQ=255)
gtgtTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAAcgcg < 1:2847673/93‑1 (MQ=255)
tgtTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAAcgcgg > 2:143350/1‑92 (MQ=255)
gtTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCCGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGAAAAAAGGCAAACGCgtg > 2:5417850/1‑93 (MQ=255)
tttCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCgtggt < 1:6262397/93‑1 (MQ=255)
tttCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCgtggt < 2:3674973/93‑1 (MQ=255)
ttCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCgtggtg < 2:3585011/93‑1 (MQ=255)
tcgtcgGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCgtggtgg > 2:3389571/1‑92 (MQ=255)
tcgGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGc < 2:5146960/93‑1 (MQ=255)
ggCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTg > 2:386023/1‑93 (MQ=255)
gCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGa > 1:435627/1‑93 (MQ=255)
cAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGaa < 1:3547885/93‑1 (MQ=255)
aaaCGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGaaa < 2:2004128/93‑1 (MQ=255)
aaCGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAg < 1:732428/93‑1 (MQ=255)
cgcgcgGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAggg > 1:5755590/1‑92 (MQ=255)
cgcgcgGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGt < 2:1524420/93‑1 (MQ=255)
cgcgcgGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGt < 1:1973608/93‑1 (MQ=255)
cgcgGGATACTACTGCGTGCCCCAGGAAGAGATTAACCAGATTCTGCTGCGGGTAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAAGTgg > 2:4330274/1‑93 (MQ=255)
gggATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGa > 1:2491792/1‑93 (MQ=255)
gATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATc < 1:5965872/93‑1 (MQ=255)
aCCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGt < 2:2621475/93‑1 (MQ=255)
cACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGttt > 1:3412005/1‑93 (MQ=255)
cGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTTAtttt < 2:5645197/93‑1 (MQ=255)
|
GACCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTACCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTTATTTT > NC_000913/3496206‑3496384
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTACGACCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTACCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTTATTTTTGG > NC_000913/3496202‑3496387
|
CTACGACCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTG < SRR4302533.5474878/94‑1 (MQ=60)
CTACGACCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTG < SRR4302533.4236320/94‑1 (MQ=60)
CTACGACCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTG < SRR4302533.1766958/94‑1 (MQ=60)
CGACCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCC > SRR4302533.2061026/1‑94 (MQ=60)
GACCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCC > SRR4302533.3887311/1‑94 (MQ=60)
ACCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCA < SRR4302533.4440805/94‑1 (MQ=60)
ACCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGCGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCA > SRR4302533.932518/1‑94 (MQ=60)
CCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAG < SRR4302533.4685981/94‑1 (MQ=60)
CCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAG < SRR4302533.3487706/94‑1 (MQ=60)
CGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGG < SRR4302533.5529335/94‑1 (MQ=60)
CGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGG > SRR4302533.2826780/1‑94 (MQ=60)
CGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGG > SRR4302533.1969001/1‑94 (MQ=60)
CGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGG < SRR4302533.3464405/94‑1 (MQ=60)
GTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGA > SRR4302533.2056322/1‑94 (MQ=60)
TCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAA < SRR4302533.1912709/94‑1 (MQ=60)
TCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAA < SRR4302533.5334838/94‑1 (MQ=60)
CTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAG < SRR4302533.1756220/94‑1 (MQ=60)
CTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAG < SRR4302533.3003249/94‑1 (MQ=60)
CTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAG > SRR4302533.3493337/1‑94 (MQ=60)
TGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGA > SRR4302533.2750833/1‑94 (MQ=60)
GGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAG > SRR4302533.5681016/1‑94 (MQ=60)
GTTTCTGACGATATTATGAATCTGTTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGTGATACCACTGCGTGCCCCAGGAAGAGA < SRR4302533.1804883/94‑1 (MQ=60)
GTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGA < SRR4302533.3591571/94‑1 (MQ=60)
GTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGA < SRR4302533.1413617/94‑1 (MQ=60)
GTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGA > SRR4302533.5609354/1‑94 (MQ=60)
TTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAACCGCGCGGGATACCACTGCGTGCCCCAGGAAGAGAT < SRR4302533.2485286/94‑1 (MQ=60)
TTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGAT < SRR4302533.5847100/94‑1 (MQ=60)
TCTGAGTATATTATGAATCTGGTACGCCGCGATGCGGCCCGTGTTTTCGTCGGCAACCGCGCGGAATACCACTGCGTGCCCCAGGAAGAGATTA < SRR4302533.2834418/94‑1 (MQ=60)
TCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTA > SRR4302533.5635981/1‑94 (MQ=60)
TGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAAC > SRR4302533.876170/1‑94 (MQ=60)
TGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAAC > SRR4302533.2968585/1‑94 (MQ=60)
GATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGA < SRR4302533.4818103/94‑1 (MQ=60)
GATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGA < SRR4302533.6212195/94‑1 (MQ=60)
ATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGAT < SRR4302533.2821774/94‑1 (MQ=60)
ATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGAT < SRR4302533.818510/94‑1 (MQ=60)
ATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGAT < SRR4302533.1158474/94‑1 (MQ=60)
ATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGAT < SRR4302533.3291376/94‑1 (MQ=60)
ATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGAT < SRR4302533.6255778/94‑1 (MQ=60)
ATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGAT < SRR4302533.1956039/94‑1 (MQ=60)
TATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATC < SRR4302533.4156996/94‑1 (MQ=60)
TTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCT < SRR4302533.1198305/94‑1 (MQ=60)
TTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCT < SRR4302533.4361210/94‑1 (MQ=60)
TTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCT < SRR4302533.2981618/94‑1 (MQ=60)
TATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTG < SRR4302533.2863991/94‑1 (MQ=60)
TATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTG < SRR4302533.4671888/94‑1 (MQ=60)
TGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCT < SRR4302533.2131266/94‑1 (MQ=60)
TGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCT > SRR4302533.835651/1‑94 (MQ=60)
GAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTG < SRR4302533.4409033/94‑1 (MQ=60)
AATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGC < SRR4302533.5393794/94‑1 (MQ=60)
ATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCG > SRR4302533.4167232/1‑94 (MQ=60)
CTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGG > SRR4302533.4381587/1‑94 (MQ=60)
CTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGG > SRR4302533.5358870/1‑94 (MQ=60)
CTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGG > SRR4302533.3458729/1‑94 (MQ=60)
CTGGTACGCCGCGATGCGGACCGTGTTGTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGG < SRR4302533.2528246/94‑1 (MQ=60)
TGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGA > SRR4302533.4761974/1‑94 (MQ=60)
TGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACAACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGA > SRR4302533.3383621/1‑94 (MQ=60)
GGTACGCCGCGATGCGGAGCGTGTGTACGTCGGCAAACGCGCGGGATACGACGGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAA < SRR4302533.5557623/94‑1 (MQ=60)
GTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAG < SRR4302533.317007/94‑1 (MQ=60)
CGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGC > SRR4302533.1389868/1‑94 (MQ=60)
GCCGCGATGCGGACCGTGTTTTTGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCA > SRR4302533.6288892/1‑94 (MQ=60)
GCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCA > SRR4302533.3324759/1‑94 (MQ=60)
GCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCA > SRR4302533.2377105/1‑94 (MQ=60)
GCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAA < SRR4302533.4455789/94‑1 (MQ=60)
CGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAA > SRR4302533.1076628/1‑94 (MQ=60)
CGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAA > SRR4302533.5422291/1‑94 (MQ=60)
GATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCTGATCCTGCTGCGGGAAGCGCAAAAAG > SRR4302533.3385400/1‑94 (MQ=60)
GATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGCAGCGCAAAAAG > SRR4302533.3269670/1‑94 (MQ=60)
GATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAG > SRR4302533.914815/1‑94 (MQ=60)
ATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGG > SRR4302533.2738768/1‑94 (MQ=60)
TGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGC > SRR4302533.2172649/1‑94 (MQ=60)
TGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGC < SRR4302533.4838205/94‑1 (MQ=60)
TGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGC < SRR4302533.1010127/94‑1 (MQ=60)
GCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCA < SRR4302533.5704069/94‑1 (MQ=60)
GGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAA < SRR4302533.5146463/94‑1 (MQ=60)
CGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAA < SRR4302533.5827781/94‑1 (MQ=60)
CGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAA > SRR4302533.4592652/1‑94 (MQ=60)
CGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAA > SRR4302533.3754849/1‑94 (MQ=60)
CGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAA > SRR4302533.3514053/1‑94 (MQ=60)
GGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAA > SRR4302533.1015022/1‑94 (MQ=60)
GGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAA > SRR4302533.4771455/1‑94 (MQ=60)
GGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAA > SRR4302533.1735146/1‑94 (MQ=60)
GGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAA < SRR4302533.3473328/94‑1 (MQ=60)
GACCGTGTTTTCGTCGGCAAACGCGCGGGATACCCCTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAAC < SRR4302533.1112575/94‑1 (MQ=60)
GACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAAC < SRR4302533.4331088/94‑1 (MQ=60)
GACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAAC < SRR4302533.4250040/94‑1 (MQ=60)
GACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAAC > SRR4302533.1669633/1‑94 (MQ=60)
GACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAAC > SRR4302533.3012763/1‑94 (MQ=60)
GACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAAC < SRR4302533.2071389/94‑1 (MQ=60)
ACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACG < SRR4302533.5456233/94‑1 (MQ=60)
ACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACG > SRR4302533.4994708/1‑94 (MQ=60)
CCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGC < SRR4302533.4706938/94‑1 (MQ=60)
GTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGT < SRR4302533.5947856/94‑1 (MQ=60)
GTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGT < SRR4302533.2865196/94‑1 (MQ=60)
TGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTG < SRR4302533.16990/94‑1 (MQ=60)
TGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTG < SRR4302533.651148/94‑1 (MQ=60)
GTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGG > SRR4302533.3851366/1‑94 (MQ=60)
GTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGG > SRR4302533.2283666/1‑94 (MQ=60)
TTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTG < SRR4302533.6299833/94‑1 (MQ=60)
TTTCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTG > SRR4302533.3037475/1‑94 (MQ=60)
TCGTCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCG < SRR4302533.2780942/94‑1 (MQ=60)
TCGGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCT < SRR4302533.5762721/94‑1 (MQ=60)
GGCAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGA > SRR4302533.438222/1‑94 (MQ=60)
CAAACGCGCGGGATACCACTTCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAA < SRR4302533.3119233/94‑1 (MQ=60)
CAAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAA < SRR4302533.3569750/94‑1 (MQ=60)
AAACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAG > SRR4302533.6050243/1‑94 (MQ=60)
AAACGCGCGGGATACCACTGCGT‑GCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGG < SRR4302533.453611/94‑1 (MQ=60)
AACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGG < SRR4302533.736738/94‑1 (MQ=60)
ACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGT < SRR4302533.3684469/94‑1 (MQ=60)
ACGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGG > SRR4302533.5790322/1‑94 (MQ=60)
ACGCGCGGGATACCACTACGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGT < SRR4302533.5052877/94‑1 (MQ=60)
CGCGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTG < SRR4302533.1985691/94‑1 (MQ=60)
CGCGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGC < SRR4302533.686550/94‑1 (MQ=60)
CGGGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGA > SRR4302533.2507140/1‑94 (MQ=60)
GGATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATC > SRR4302533.1536600/1‑94 (MQ=60)
GATACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCC < SRR4302533.6001974/94‑1 (MQ=60)
ACCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTT > SRR4302533.5671633/1‑94 (MQ=60)
CCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTT > SRR4302533.3433080/1‑94 (MQ=60)
CCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTT > SRR4302533.2467355/1‑94 (MQ=60)
CCACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGCTGGCGATCCGTTT < SRR4302533.3428980/94‑1 (MQ=60)
ACTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTTAT < SRR4302533.2921742/94‑1 (MQ=60)
CTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTTATT > SRR4302533.2038901/1‑94 (MQ=60)
CTGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTTATT < SRR4302533.217163/94‑1 (MQ=60)
TGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTTATTT < SRR4302533.5402482/94‑1 (MQ=60)
TGCGTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTTATTT < SRR4302533.3374088/94‑1 (MQ=60)
GTGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTTATTTTTG < SRR4302533.4162794/94‑1 (MQ=60)
TGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTTATTTTTGG < SRR4302533.5350011/94‑1 (MQ=60)
TGCCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTTATTTTTGG < SRR4302533.2340278/94‑1 (MQ=60)
|
CTACGACCGTCTGGTTTCTGACGATATTATGAATCTGGTACGCCGCGATGCGGACCGTGTTTTCGTCGGCAAACGCGCGGGATACCACTGCGTACCCCAGGAAGAGATTAACCAGATCCTGCTGCGGGAAGCGCAAAAAGGCAAACGCGTGGTGCGGCTGAAAGGTGGCGATCCGTTTATTTTTGG > NC_000913/3496202‑3496387
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
