Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,509,089 T→C N5S (AAC→AGC) 
E225E (GAA→GAG
yhfY ←
yhfZ ←
hypothetical protein
hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,509,0890TC100.0% 779.8 / NA 242N5S (AAC→AGC) 
E225E (GAA→GAG
yhfY
yhfZ
hypothetical protein
hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (136/106);  total (136/106)

Only 100 of 248 total aligned reads displayed.

CCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATC  >  NC_000913/3508999‑3509178
                                                                                          |                                                                                         
ccTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTc                                                                                         <  2:5108813/93‑1 (MQ=255)
ccTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTc                                                                                         <  1:2401424/93‑1 (MQ=255)
 cTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTcc                                                                                        <  1:3009833/93‑1 (MQ=255)
  tttGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCt                                                                                       >  2:4094534/1‑93 (MQ=255)
    tGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGt                                                                                     <  2:240801/93‑1 (MQ=255)
     gCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGtt                                                                                    >  1:5872167/1‑93 (MQ=255)
     gCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGtt                                                                                    >  1:2828357/1‑93 (MQ=255)
       aGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTcc                                                                                  >  2:3734323/1‑93 (MQ=255)
       aGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTcc                                                                                  >  1:1256738/1‑93 (MQ=255)
          tGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCca                                                                               >  2:810143/1‑93 (MQ=255)
          tGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCca                                                                               <  2:3828203/93‑1 (MQ=255)
          tGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCca                                                                               >  2:1649650/1‑93 (MQ=255)
            tCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCcact                                                                             >  2:4782942/1‑93 (MQ=255)
              cTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCcactca                                                                           >  2:3385100/1‑93 (MQ=255)
              cTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCcactca                                                                           <  2:3147216/93‑1 (MQ=255)
               ttATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCcactcaa                                                                          <  2:3266885/93‑2 (MQ=255)
                tATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGTCTTTCGTTTAATAACTCGGCTCCTGTTCCCcactcact                                                                         >  1:3939974/1‑93 (MQ=255)
                tATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCcactcact                                                                         >  1:1454432/1‑93 (MQ=255)
                 aTCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTa                                                                        >  2:4242621/1‑93 (MQ=255)
                 aTCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTa                                                                        >  1:577957/1‑93 (MQ=255)
                 aTCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTa                                                                        >  2:454050/1‑93 (MQ=255)
                  tCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCGTATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTAc                                                                       >  1:3383694/1‑93 (MQ=255)
                  tCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTAc                                                                       >  1:23057/1‑93 (MQ=255)
                   cAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTAcc                                                                      >  2:1840921/1‑93 (MQ=255)
                    aaTAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTAccc                                                                     <  1:3818843/93‑1 (MQ=255)
                    aaTAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTAccc                                                                     >  1:1571298/1‑93 (MQ=255)
                     aTAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCg                                                                    >  1:4938961/1‑93 (MQ=255)
                       aaCGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCgtt                                                                  <  1:6152169/93‑1 (MQ=255)
                        aCGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCgttg                                                                 >  1:5754152/1‑93 (MQ=255)
                        aCGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCgttg                                                                 <  2:856239/93‑1 (MQ=255)
                          gcctgcctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCgttgtt                                                               >  1:734206/1‑93 (MQ=255)
                           cctgcctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGttgttg                                                              >  1:4127133/1‑93 (MQ=255)
                            ctgcctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGa                                                             >  2:461799/1‑93 (MQ=255)
                             tgcctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGAt                                                            <  2:2336306/93‑1 (MQ=255)
                             tgcctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGAt                                                            <  2:1601756/93‑1 (MQ=255)
                             tgcctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGAt                                                            <  1:4773919/93‑1 (MQ=255)
                              gcctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATg                                                           >  1:5021268/1‑93 (MQ=255)
                              gcctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATg                                                           <  2:5643938/93‑1 (MQ=255)
                               cctCTCAAAGCAGGTTGAGTCTGGTTTCCATATCAGAGGTCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTTCCCGTTGTTGATgg                                                          <  2:2843937/93‑1 (MQ=255)
                               cctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATgg                                                          >  1:4222452/1‑93 (MQ=255)
                                 tCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGc                                                        >  1:4716177/1‑93 (MQ=255)
                                 tCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGc                                                        >  1:3174192/1‑93 (MQ=255)
                                 tCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGc                                                        <  2:1347023/93‑1 (MQ=255)
                                  cGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCg                                                       >  1:1002752/1‑93 (MQ=255)
                                  cGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCg                                                       <  1:2047082/93‑1 (MQ=255)
                                  cGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCg                                                       >  1:1825044/1‑93 (MQ=255)
                                   gCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGa                                                      <  2:3912070/93‑1 (MQ=255)
                                   gCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGa                                                      >  2:221204/1‑93 (MQ=255)
                                   gCAAAGCAGGTTGAGTCTAGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGa                                                      <  1:3885158/93‑1 (MQ=255)
                                      aaGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCa                                                   >  2:5244941/1‑93 (MQ=255)
                                         cAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAggg                                                <  1:6057496/93‑1 (MQ=255)
                                            gTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCgt                                             <  2:2194529/93‑1 (MQ=255)
                                              tGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCgtgt                                           >  2:2757454/1‑93 (MQ=255)
                                              tGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCgtgt                                           <  2:95761/93‑1 (MQ=255)
                                               gAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGtt                                          >  1:1349005/1‑93 (MQ=255)
                                               gAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGtt                                          >  2:2504370/1‑93 (MQ=255)
                                                aGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGttt                                         >  2:3230785/1‑93 (MQ=255)
                                                 gTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTa                                        >  1:4683024/1‑93 (MQ=255)
                                                   cTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATc                                      <  1:823564/93‑1 (MQ=255)
                                                    tGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCt                                     >  2:1950155/1‑93 (MQ=255)
                                                    tGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCt                                     >  2:4710733/1‑93 (MQ=255)
                                                     ggTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTa                                    >  2:1251101/1‑93 (MQ=255)
                                                      gTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTAc                                   <  2:6221541/93‑1 (MQ=255)
                                                       tttCCATATCAGATGCCTTTCGTTTAATACCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACa                                  <  1:1923318/93‑1 (MQ=255)
                                                        ttCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACaa                                 <  1:399561/93‑1 (MQ=255)
                                                         tCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAAc                                <  2:2436637/93‑1 (MQ=255)
                                                         tCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAAc                                <  2:920052/93‑1 (MQ=255)
                                                         tCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAAc                                <  2:1389687/93‑1 (MQ=255)
                                                             tatCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCa                            <  2:2966295/93‑1 (MQ=255)
                                                             tatCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCa                            >  2:5168595/1‑93 (MQ=255)
                                                                cAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgc                         >  1:5358840/1‑93 (MQ=255)
                                                                cAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgc                         >  1:6022063/1‑93 (MQ=255)
                                                                 aGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgca                        >  2:4407500/1‑93 (MQ=255)
                                                                  gATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgcag                       >  1:2183086/1‑93 (MQ=255)
                                                                    tGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgcagca                     >  1:953489/1‑93 (MQ=255)
                                                                     gCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGcagcag                    >  1:2653856/1‑93 (MQ=255)
                                                                     gCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGcagcag                    >  1:5510304/1‑93 (MQ=255)
                                                                      ccTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgt                   >  2:4883277/1‑93 (MQ=255)
                                                                       cTTTCGTTTAATAACTCGCCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgtt                  <  2:5904255/93‑1 (MQ=255)
                                                                        tttCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgttg                 >  2:3400422/1‑93 (MQ=255)
                                                                        tttCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgttg                 <  1:5488360/93‑1 (MQ=255)
                                                                         ttCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgttgt                >  1:3640624/1‑93 (MQ=255)
                                                                            gTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGc             >  2:3513764/1‑93 (MQ=255)
                                                                            gTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTCGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGc             >  1:4439199/1‑93 (MQ=255)
                                                                            gTTTAATAACTCGGCTCCTGTTCCCCACTCACTAACCGATGTTGATGGGCGAGCAGGGCGGGTTTATCTTCTACCGCACGCAGCAGTTGTTGc             >  2:704819/1‑93 (MQ=255)
                                                                             tttAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCa            >  2:5296869/1‑93 (MQ=255)
                                                                               taataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGCTGGGCGAGCAGGGCGTGTTTATCTACTACGGCACGCCGCAGTTGTTGCAtt          >  1:5205187/1‑93 (MQ=255)
                                                                               taataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCAtt          <  2:735074/93‑1 (MQ=255)
                                                                                aataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGGGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTg         <  1:868296/93‑1 (MQ=255)
                                                                                aataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTg         <  1:5556045/93‑1 (MQ=255)
                                                                                 ataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTgg        >  1:2312846/1‑93 (MQ=255)
                                                                                 ataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTgg        <  2:1782647/93‑1 (MQ=255)
                                                                                 ataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTgg        <  2:1070043/93‑1 (MQ=255)
                                                                                 ataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTgg        >  1:5965651/1‑93 (MQ=255)
                                                                                 ataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTgg        >  1:612388/1‑93 (MQ=255)
                                                                                   aaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGt      >  2:6234421/1‑93 (MQ=255)
                                                                                    aCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTa     <  1:5703066/93‑1 (MQ=255)
                                                                                    aCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTa     <  2:1919909/93‑1 (MQ=255)
                                                                                      tCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAat   >  2:4197145/1‑93 (MQ=255)
                                                                                       cGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAatc  >  2:1318849/1‑93 (MQ=255)
                                                                                          |                                                                                         
CCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATC  >  NC_000913/3508999‑3509178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCATCG  >  NC_000913/3508996‑3509182
                                                                                             |                                                                                             
ATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGC                                                                                               >  SRR4302533.5969699/1‑94 (MQ=60)
 TGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCT                                                                                              <  SRR4302533.1145115/94‑1 (MQ=60)
 TGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCT                                                                                              >  SRR4302533.6078668/1‑94 (MQ=60)
 TGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCT                                                                                              <  SRR4302533.1450900/94‑1 (MQ=60)
 TGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCT                                                                                              >  SRR4302533.3475185/1‑94 (MQ=60)
  GCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTC                                                                                             >  SRR4302533.1314804/1‑94 (MQ=60)
  GCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTC                                                                                             >  SRR4302533.4001367/1‑94 (MQ=60)
   CCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCC                                                                                            <  SRR4302533.2416254/94‑1 (MQ=60)
    CTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCT                                                                                           >  SRR4302533.6091156/1‑94 (MQ=60)
    CTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCT                                                                                           <  SRR4302533.1392841/94‑1 (MQ=60)
    CTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCT                                                                                           <  SRR4302533.3028250/94‑1 (MQ=60)
    CTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCT                                                                                           >  SRR4302533.871827/1‑94 (MQ=60)
     TTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTG                                                                                          <  SRR4302533.5829174/94‑1 (MQ=60)
      TTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGT                                                                                         >  SRR4302533.2320650/1‑94 (MQ=60)
       TGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTT                                                                                        >  SRR4302533.5907662/1‑94 (MQ=60)
       TGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTT                                                                                        >  SRR4302533.2845757/1‑94 (MQ=60)
        GCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTC                                                                                       >  SRR4302533.272465/1‑94 (MQ=60)
         CAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCC                                                                                      >  SRR4302533.1264252/1‑94 (MQ=60)
          AGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCC                                                                                     >  SRR4302533.3583292/1‑94 (MQ=60)
          AGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCC                                                                                     >  SRR4302533.6172419/1‑94 (MQ=60)
              GTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACT                                                                                 >  SRR4302533.3908639/1‑94 (MQ=60)
                CCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCA                                                                               >  SRR4302533.5023805/1‑94 (MQ=60)
                CCTTATCAATAACGCCTGCCGCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCA                                                                               <  SRR4302533.2669016/94‑1 (MQ=60)
                 CTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCAC                                                                              <  SRR4302533.5904158/94‑1 (MQ=60)
                  TTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGTCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACT                                                                             >  SRR4302533.3964018/1‑94 (MQ=60)
                  TTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACT                                                                             >  SRR4302533.963282/1‑94 (MQ=60)
                  TTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACT                                                                             >  SRR4302533.1463202/1‑94 (MQ=60)
                   TATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTA                                                                            >  SRR4302533.581365/1‑94 (MQ=60)
                    ATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCGTATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTAC                                                                           >  SRR4302533.3404584/1‑94 (MQ=60)
                    ATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTAC                                                                           >  SRR4302533.23211/1‑94 (MQ=60)
                      CAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCC                                                                         >  SRR4302533.1580763/1‑94 (MQ=60)
                       AATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCG                                                                        <  SRR4302533.3842197/94‑1 (MQ=60)
                       AATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCG                                                                        >  SRR4302533.4968859/1‑94 (MQ=60)
                          AACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTG                                                                     <  SRR4302533.6189193/94‑1 (MQ=60)
                          AACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTG                                                                     >  SRR4302533.5788869/1‑94 (MQ=60)
                            CGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTT                                                                   <  SRR4302533.890644/94‑1 (MQ=60)
                            CGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTT                                                                   >  SRR4302533.738526/1‑94 (MQ=60)
                            CGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTT                                                                   <  SRR4302533.1964509/94‑1 (MQ=60)
                            CGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTT                                                                   >  SRR4302533.3044850/1‑94 (MQ=60)
                             GCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTG                                                                  <  SRR4302533.6049197/94‑1 (MQ=60)
                             GCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTG                                                                  >  SRR4302533.4152188/1‑94 (MQ=60)
                             GCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAAATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTG                                                                  <  SRR4302533.3883247/94‑1 (MQ=60)
                                TGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATG                                                               <  SRR4302533.5284962/94‑1 (MQ=60)
                                TGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATG                                                               <  SRR4302533.4802846/94‑1 (MQ=60)
                                TGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATG                                                               >  SRR4302533.5051678/1‑94 (MQ=60)
                                 GCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGG                                                              >  SRR4302533.4247981/1‑94 (MQ=60)
                                 GCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGG                                                              >  SRR4302533.2950586/1‑94 (MQ=60)
                                  CCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGG                                                             >  SRR4302533.4593356/1‑94 (MQ=60)
                                   CTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGC                                                            >  SRR4302533.4744768/1‑94 (MQ=60)
                                   CTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGC                                                            >  SRR4302533.3193726/1‑94 (MQ=60)
                                   CTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGC                                                            >  SRR4302533.3163992/1‑94 (MQ=60)
                                    TCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCG                                                           >  SRR4302533.1836193/1‑94 (MQ=60)
                                    TCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCG                                                           <  SRR4302533.3921307/94‑1 (MQ=60)
                                    TCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCG                                                           <  SRR4302533.3997516/94‑1 (MQ=60)
                                    TCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCG                                                           >  SRR4302533.1008611/1‑94 (MQ=60)
                                     CGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGA                                                          <  SRR4302533.460942/94‑1 (MQ=60)
                                     CGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGA                                                          <  SRR4302533.2059705/94‑1 (MQ=60)
                                      GCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAG                                                         <  SRR4302533.5407299/94‑1 (MQ=60)
                                      GCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAG                                                         <  SRR4302533.2670542/94‑1 (MQ=60)
                                      GCAAAGCAGGTTGAGTCTAGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAG                                                         <  SRR4302533.3908862/94‑1 (MQ=60)
                                        AAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCA                                                       >  SRR4302533.6011305/1‑94 (MQ=60)
                                         AAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAG                                                      <  SRR4302533.6225484/94‑1 (MQ=60)
                                          AGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGG                                                     <  SRR4302533.1218314/94‑1 (MQ=60)
                                           GCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGG                                                    <  SRR4302533.2328442/94‑1 (MQ=60)
                                            CAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGC                                                   <  SRR4302533.6094172/94‑1 (MQ=60)
                                            CAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGC                                                   <  SRR4302533.2316759/94‑1 (MQ=60)
                                             AGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCG                                                  >  SRR4302533.869790/1‑94 (MQ=60)
                                             AGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCG                                                  >  SRR4302533.5073804/1‑94 (MQ=60)
                                              GGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGT                                                 >  SRR4302533.5762159/1‑94 (MQ=60)
                                                 TGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTT                                              >  SRR4302533.1357122/1‑94 (MQ=60)
                                                   AGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTA                                            >  SRR4302533.4711397/1‑94 (MQ=60)
                                                     TCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATC                                          <  SRR4302533.183560/94‑1 (MQ=60)
                                                      CTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCT                                         <  SRR4302533.828396/94‑1 (MQ=60)
                                                      CTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCT                                         >  SRR4302533.4156103/1‑94 (MQ=60)
                                                        GGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTAC                                       >  SRR4302533.3836201/1‑94 (MQ=60)
                                                          TTTCCATATCAGATGCCTTTCGTTTAATACCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAA                                     <  SRR4302533.1935054/94‑1 (MQ=60)
                                                          TTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAA                                     >  SRR4302533.5196541/1‑94 (MQ=60)
                                                           TTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAAC                                    <  SRR4302533.6094555/94‑1 (MQ=60)
                                                           TTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAAC                                    >  SRR4302533.5704799/1‑94 (MQ=60)
                                                           TTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAAC                                    <  SRR4302533.401973/94‑1 (MQ=60)
                                                            TCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACG                                   <  SRR4302533.1748786/94‑1 (MQ=60)
                                                             CCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGG                                  >  SRR4302533.772232/1‑94 (MQ=60)
                                                               ATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCA                                <  SRR4302533.2041577/94‑1 (MQ=60)
                                                                TATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCAC                               <  SRR4302533.591232/94‑1 (MQ=60)
                                                                 ATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACG                              >  SRR4302533.5413576/1‑94 (MQ=60)
                                                                 ATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACG                              <  SRR4302533.190154/94‑1 (MQ=60)
                                                                  TCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGC                             >  SRR4302533.6058559/1‑94 (MQ=60)
                                                                  TCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGC                             >  SRR4302533.5391008/1‑94 (MQ=60)
                                                                  TCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGC                             >  SRR4302533.5806439/1‑94 (MQ=60)
                                                                    AGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAG                           >  SRR4302533.2196544/1‑94 (MQ=60)
                                                                      ATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCA                         >  SRR4302533.959090/1‑94 (MQ=60)
                                                                      ATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCA                         >  SRR4302533.5524343/1‑94 (MQ=60)
                                                                       TGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAG                        >  SRR4302533.5543569/1‑94 (MQ=60)
                                                                       TGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAG                        >  SRR4302533.2670158/1‑94 (MQ=60)
                                                                          CTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCCGCAGTTG                     >  SRR4302533.4323078/1‑94 (MQ=60)
                                                                          CTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTG                     <  SRR4302533.6157589/94‑1 (MQ=60)
                                                                          CTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTG                     <  SRR4302533.4729947/94‑1 (MQ=60)
                                                                           TTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGT                    >  SRR4302533.3663011/1‑94 (MQ=60)
                                                                           TTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGT                    >  SRR4302533.2123326/1‑94 (MQ=60)
                                                                           TTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGT                    <  SRR4302533.5521448/94‑1 (MQ=60)
                                                                            TTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTCCCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTT                   <  SRR4302533.970690/94‑1 (MQ=60)
                                                                            TTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTT                   <  SRR4302533.2387776/94‑1 (MQ=60)
                                                                              CGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGC                 >  SRR4302533.5572362/1‑94 (MQ=60)
                                                                              CGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTCGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGC                 >  SRR4302533.4466034/1‑94 (MQ=60)
                                                                               GTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCA                <  SRR4302533.6247996/94‑1 (MQ=60)
                                                                               GTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCA                >  SRR4302533.5577614/1‑94 (MQ=60)
                                                                               GTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCA                >  SRR4302533.3504992/1‑94 (MQ=60)
                                                                                 TTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGCTGGGCGAGCAGGGCGTGTTTATCTACTACGGCACGCCGCAGTTGTTGCATT              >  SRR4302533.5236552/1‑94 (MQ=60)
                                                                                 TTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATT              >  SRR4302533.5757087/1‑94 (MQ=60)
                                                                                   AATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGGGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGG            <  SRR4302533.873385/94‑1 (MQ=60)
                                                                                   AATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGG            <  SRR4302533.4828916/94‑1 (MQ=60)
                                                                                   AATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGG            >  SRR4302533.615989/1‑94 (MQ=60)
                                                                                   AATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGG            >  SRR4302533.2327174/1‑94 (MQ=60)
                                                                                   AATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGG            >  SRR4302533.6001751/1‑94 (MQ=60)
                                                                                   AATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGG            <  SRR4302533.5589621/94‑1 (MQ=60)
                                                                                     TAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGT          >  SRR4302533.410432/1‑94 (MQ=60)
                                                                                      AACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTA         <  SRR4302533.1481385/94‑1 (MQ=60)
                                                                                      AACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTA         <  SRR4302533.146041/94‑1 (MQ=60)
                                                                                       ACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAA        <  SRR4302533.2277447/94‑1 (MQ=60)
                                                                                       ACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAA        <  SRR4302533.5737513/94‑1 (MQ=60)
                                                                                        CTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAAT       >  SRR4302533.3241672/1‑94 (MQ=60)
                                                                                        CTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAAT       >  SRR4302533.4192083/1‑94 (MQ=60)
                                                                                        CTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAAT       >  SRR4302533.4938189/1‑94 (MQ=60)
                                                                                          CGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCA     <  SRR4302533.4767383/94‑1 (MQ=60)
                                                                                           GGCTCCTGTTCCCCAGTCACTGCCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCAT    <  SRR4302533.2265374/94‑1 (MQ=60)
                                                                                           GGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCAT    <  SRR4302533.1735803/94‑1 (MQ=60)
                                                                                            GCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCATC   >  SRR4302533.2948097/1‑94 (MQ=60)
                                                                                            GCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCATC   <  SRR4302533.708962/94‑1 (MQ=60)
                                                                                            GCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCATC   >  SRR4302533.4330482/1‑94 (MQ=60)
                                                                                             CTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCATCG  <  SRR4302533.5488155/94‑1 (MQ=60)
                                                                                             |                                                                                             
ATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCATCG  >  NC_000913/3508996‑3509182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: