Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,561,412 |
A→G |
V76A (GTG→GCG) |
b3427 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,561,412 | 0 | A | G | 100.0%
| 792.8
/ NA
| 247 | V76A (GTG→GCG) | b3427 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (132/115); total (132/115) |
Only 100 of 248 total aligned reads displayed.
GCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCACGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATA > NC_000913/3561324‑3561501
|
gcACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGtt > 2:3067774/1‑93 (MQ=255)
gcACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGtt < 1:4604811/93‑1 (MQ=255)
cACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTc > 2:4272166/1‑93 (MQ=255)
cTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTccc < 1:1981382/93‑1 (MQ=255)
cTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTccc < 2:2117154/93‑1 (MQ=255)
tGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCAc > 2:215479/1‑93 (MQ=255)
tGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCAc < 2:4709317/93‑1 (MQ=255)
tGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCAc < 1:434883/93‑1 (MQ=255)
aaaaTCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGcc > 2:5288531/1‑93 (MQ=255)
aTCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCg > 2:2664853/1‑93 (MQ=255)
tCTAACCTACTTTTTAATTGAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCga > 2:6081586/1‑93 (MQ=255)
tCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCga > 2:5601944/1‑93 (MQ=255)
cTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCgag < 1:4463318/93‑1 (MQ=255)
tAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCgaga > 1:3503668/1‑93 (MQ=255)
aaCCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGaa > 2:1812524/1‑93 (MQ=255)
aaCCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGaa > 1:87139/1‑93 (MQ=255)
aaCCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGaa > 2:4956917/1‑93 (MQ=255)
aCCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGaaa > 2:612283/1‑93 (MQ=255)
ccTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGaaaa < 2:1384819/93‑1 (MQ=255)
cTACTTTTTAATTTAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGaaaaa > 2:5924306/1‑93 (MQ=255)
cTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGaaaaa > 2:5347656/1‑93 (MQ=255)
cTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGaaaaa > 2:1143848/1‑93 (MQ=255)
cTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGaaaaa > 1:2300439/1‑93 (MQ=255)
tACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAAt > 1:5335723/1‑93 (MQ=255)
cTTTTTAATTCAGGAAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAg < 2:5520803/93‑1 (MQ=255)
tttttAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGc > 2:2283103/1‑93 (MQ=255)
tttttAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGc > 1:987290/1‑93 (MQ=255)
ttttAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCa > 2:2902177/1‑93 (MQ=255)
ttttAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCa < 1:5967068/93‑1 (MQ=255)
ttAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAATTAGCAtt < 2:2388911/93‑1 (MQ=255)
aaTTCATGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTaa < 2:4166531/93‑1 (MQ=255)
aaTTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTaa < 1:3187534/93‑1 (MQ=255)
aTTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAAt > 1:414807/1‑93 (MQ=255)
ttCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATg > 1:3312707/1‑93 (MQ=255)
ttCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATg > 2:5867964/1‑93 (MQ=255)
tCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATgc < 1:1804162/93‑1 (MQ=255)
tCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATgc > 1:4717140/1‑93 (MQ=255)
cAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATgcg > 1:6215004/1‑93 (MQ=255)
gggAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGcc > 2:6063988/1‑93 (MQ=255)
gAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCa > 2:4331872/1‑93 (MQ=255)
gAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCa > 1:1940157/1‑93 (MQ=255)
gAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCa > 1:3907059/1‑93 (MQ=255)
gAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCa < 2:2016514/93‑1 (MQ=255)
aaTTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAg < 2:3990963/93‑1 (MQ=255)
aTTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAgc < 1:2668089/93‑1 (MQ=255)
ttACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAgcg > 2:2428835/1‑93 (MQ=255)
ccGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCa < 2:6258455/93‑1 (MQ=255)
aaaGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCAt > 2:3791072/1‑93 (MQ=255)
aaaGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCAt > 2:3418037/1‑93 (MQ=255)
aaGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATa < 2:2576464/93‑1 (MQ=255)
aaGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATa < 1:2555140/93‑1 (MQ=255)
aGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATaa < 1:4516041/93‑1 (MQ=255)
gCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATaaa > 2:834542/1‑93 (MQ=255)
cccACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATaaaa < 1:1360458/93‑1 (MQ=255)
cccACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATaaaa > 2:662376/1‑93 (MQ=255)
ccACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATaaaaa < 1:2171012/93‑1 (MQ=255)
ccACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATaaaaa > 1:577868/1‑93 (MQ=255)
cACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAAt < 1:1009482/93‑1 (MQ=255)
cACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAAt > 2:1689975/1‑93 (MQ=255)
cACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAAt < 1:2764770/93‑1 (MQ=255)
aCGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAAtt < 1:5642184/93‑1 (MQ=255)
cGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAAttt < 2:771889/93‑1 (MQ=255)
cGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAAttt < 1:497739/93‑1 (MQ=255)
gCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAAtttt > 2:631848/1‑93 (MQ=255)
gCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAAtttt < 1:223520/93‑1 (MQ=255)
gCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAAtttt < 1:5022028/93‑1 (MQ=255)
ccATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTg > 1:4225312/1‑93 (MQ=255)
catcatACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGa > 1:5234780/1‑93 (MQ=255)
catcatACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGa > 2:204980/1‑93 (MQ=255)
tcatACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGc < 1:5479306/93‑1 (MQ=255)
tcatACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGc > 1:3028300/1‑93 (MQ=255)
tcatACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGc < 2:4579010/93‑1 (MQ=255)
catACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCa < 2:5094726/93‑1 (MQ=255)
catACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCa > 1:1450877/1‑93 (MQ=255)
catACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCa < 1:6099086/93‑1 (MQ=255)
catACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCa < 2:1885861/93‑1 (MQ=255)
atACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAg < 1:5363071/93‑1 (MQ=255)
atACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAg < 2:4023603/93‑1 (MQ=255)
atACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAg < 2:1765705/93‑1 (MQ=255)
tACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGa > 2:3188694/1‑93 (MQ=255)
aCCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGaa < 2:3244761/93‑1 (MQ=255)
cccAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAg < 1:5190545/93‑1 (MQ=255)
cccAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAg > 1:5409672/1‑93 (MQ=255)
ccAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAgg > 1:3458022/1‑93 (MQ=255)
aaCGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTa > 2:4873668/1‑93 (MQ=255)
aaCGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTa > 2:3687801/1‑93 (MQ=255)
aCGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTaa > 2:3843202/1‑93 (MQ=255)
cGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTaaa > 2:3316693/1‑93 (MQ=255)
cGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTaaa < 2:5150261/93‑1 (MQ=255)
tAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAtt > 1:2479541/1‑93 (MQ=255)
tAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAtt > 1:1579293/1‑93 (MQ=255)
aCAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAttgt < 1:3841750/93‑1 (MQ=255)
aCAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAttgt < 2:160178/93‑1 (MQ=255)
cAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAttgtt < 2:362545/93‑1 (MQ=255)
cAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAttgtt < 1:673258/93‑1 (MQ=255)
aaaaCTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAttgttg < 1:2361419/93‑1 (MQ=255)
aaccTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATCAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTgg < 2:2242475/90‑1 (MQ=255)
aaCTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGc < 2:1440208/93‑1 (MQ=255)
aCTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCg > 1:3228305/1‑93 (MQ=255)
tCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTg < 2:1289000/93‑1 (MQ=255)
|
GCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCACGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATA > NC_000913/3561324‑3561501
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCACGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATAAGGA > NC_000913/3561319‑3561505
|
AAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCG > SRR4302533.5948191/1‑94 (MQ=60)
AAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCG < SRR4302533.4118571/94‑1 (MQ=60)
AGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCG < SRR4302533.755157/94‑1 (MQ=60)
GCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTC < SRR4302533.4632709/94‑1 (MQ=60)
CACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCC > SRR4302533.2133057/1‑94 (MQ=60)
CTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCC < SRR4302533.1993510/94‑1 (MQ=60)
CTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCC > SRR4302533.6000863/1‑94 (MQ=60)
CTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCC > SRR4302533.3967400/1‑94 (MQ=60)
TTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCAC > SRR4302533.4850800/1‑94 (MQ=60)
TGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCGCGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACT < SRR4302533.4291173/94‑1 (MQ=60)
TGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACT < SRR4302533.437474/94‑1 (MQ=60)
GTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTC < SRR4302533.5995009/94‑1 (MQ=60)
GTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTC > SRR4302533.5498578/1‑94 (MQ=60)
GTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTC > SRR4302533.5211378/1‑94 (MQ=60)
TCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCG < SRR4302533.2447795/94‑1 (MQ=60)
AAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCC > SRR4302533.2697191/1‑94 (MQ=60)
AATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCG > SRR4302533.4581906/1‑94 (MQ=60)
AATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCG > SRR4302533.88230/1‑94 (MQ=60)
ATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGA > SRR4302533.6210629/1‑94 (MQ=60)
TCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAG < SRR4302533.716154/94‑1 (MQ=60)
CTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGA > SRR4302533.3525266/1‑94 (MQ=60)
CTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGA < SRR4302533.4490311/94‑1 (MQ=60)
TAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAA > SRR4302533.87698/1‑94 (MQ=60)
TAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAA > SRR4302533.2852415/1‑94 (MQ=60)
ACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAA > SRR4302533.4939411/1‑94 (MQ=60)
CCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAA > SRR4302533.2314696/1‑94 (MQ=60)
CTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAAT > SRR4302533.5367706/1‑94 (MQ=60)
CTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAAT < SRR4302533.2570426/94‑1 (MQ=60)
TACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATA < SRR4302533.5209890/94‑1 (MQ=60)
TACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATA > SRR4302533.4635783/1‑94 (MQ=60)
CTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGC > SRR4302533.993069/1‑94 (MQ=60)
TTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCA > SRR4302533.2048148/1‑94 (MQ=60)
TTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCAT < SRR4302533.6003190/94‑1 (MQ=60)
TTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCAT < SRR4302533.6113680/94‑1 (MQ=60)
TTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCAT > SRR4302533.1673071/1‑94 (MQ=60)
TTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCAT < SRR4302533.3418870/94‑1 (MQ=60)
AATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAAT > SRR4302533.417299/1‑94 (MQ=60)
AATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAAT > SRR4302533.3822304/1‑94 (MQ=60)
AATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAAT < SRR4302533.3207143/94‑1 (MQ=60)
ATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATG > SRR4302533.3333162/1‑94 (MQ=60)
TTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGC > SRR4302533.4745743/1‑94 (MQ=60)
TTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGC > SRR4302533.5409430/1‑94 (MQ=60)
TCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCG < SRR4302533.1815142/94‑1 (MQ=60)
TCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCG > SRR4302533.6252270/1‑94 (MQ=60)
GGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCC > SRR4302533.1361116/1‑94 (MQ=60)
GGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCC > SRR4302533.1981501/1‑94 (MQ=60)
GGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCC < SRR4302533.3093411/94‑1 (MQ=60)
GGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCA > SRR4302533.4513989/1‑94 (MQ=60)
GGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCA > SRR4302533.1951991/1‑94 (MQ=60)
GGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCA > SRR4302533.3930923/1‑94 (MQ=60)
GAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAG < SRR4302533.4213676/94‑1 (MQ=60)
AATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGC > SRR4302533.3244257/1‑94 (MQ=60)
ATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGCGAAAAATAGCATTAATGCGCCCAGCG > SRR4302533.2315604/1‑94 (MQ=60)
ATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCG < SRR4302533.2684460/94‑1 (MQ=60)
ATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCG < SRR4302533.5256239/94‑1 (MQ=60)
ATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCG < SRR4302533.833387/94‑1 (MQ=60)
ATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCC > SRR4302533.4543852/1‑94 (MQ=60)
TTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGC < SRR4302533.2206783/94‑1 (MQ=60)
ATACCGCAAAGCCCACGCAATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCGCTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGC < SRR4302533.5371245/94‑1 (MQ=60)
TACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCC < SRR4302533.1476469/94‑1 (MQ=60)
ACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCA < SRR4302533.1435880/94‑1 (MQ=60)
ACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCA < SRR4302533.5736001/94‑1 (MQ=60)
CGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGC > SRR4302533.4291929/1‑94 (MQ=60)
CAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCAT > SRR4302533.1903020/1‑94 (MQ=60)
CAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCAT < SRR4302533.5620807/94‑1 (MQ=60)
CAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCAT < SRR4302533.1566104/94‑1 (MQ=60)
AAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAA < SRR4302533.2570858/94‑1 (MQ=60)
AGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAA < SRR4302533.4543386/94‑1 (MQ=60)
CCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAA < SRR4302533.1368632/94‑1 (MQ=60)
CCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAA > SRR4302533.581276/1‑94 (MQ=60)
CCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAAT < SRR4302533.2184365/94‑1 (MQ=60)
CCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAAT > SRR4302533.3234513/1‑94 (MQ=60)
CACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATT < SRR4302533.2781722/94‑1 (MQ=60)
CACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATT < SRR4302533.1015387/94‑1 (MQ=60)
CACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATT < SRR4302533.5387483/94‑1 (MQ=60)
CACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATT > SRR4302533.5354309/1‑94 (MQ=60)
ACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTT < SRR4302533.5676286/94‑1 (MQ=60)
CGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTT < SRR4302533.500706/94‑1 (MQ=60)
GCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTG < SRR4302533.5052441/94‑1 (MQ=60)
GCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTG > SRR4302533.4250859/1‑94 (MQ=60)
GCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTG < SRR4302533.224915/94‑1 (MQ=60)
CCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGA > SRR4302533.5266258/1‑94 (MQ=60)
CATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAG < SRR4302533.50219/94‑1 (MQ=60)
CATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAG < SRR4302533.5562846/94‑1 (MQ=60)
CATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAG < SRR4302533.245957/94‑1 (MQ=60)
ATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGC > SRR4302533.6289335/1‑94 (MQ=60)
ATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGC < SRR4302533.4025098/94‑1 (MQ=60)
ATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGC > SRR4302533.3046833/1‑94 (MQ=60)
TCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCA < SRR4302533.5512339/94‑1 (MQ=60)
TCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCA > SRR4302533.1459632/1‑94 (MQ=60)
CATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAG < SRR4302533.3483120/94‑1 (MQ=60)
CATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAG < SRR4302533.6135917/94‑1 (MQ=60)
ATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGA > SRR4302533.3710212/1‑94 (MQ=60)
ATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGA < SRR4302533.6231869/94‑1 (MQ=60)
ATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGA < SRR4302533.5395282/94‑1 (MQ=60)
ACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAG < SRR4302533.2591939/94‑1 (MQ=60)
ACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAG > SRR4302533.5442191/1‑94 (MQ=60)
CCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGG < SRR4302533.5221862/94‑1 (MQ=60)
CCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGG > SRR4302533.3479368/1‑94 (MQ=60)
CCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGT > SRR4302533.2806411/1‑94 (MQ=60)
CGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAT < SRR4302533.2268838/94‑1 (MQ=60)
GTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATT > SRR4302533.3422967/1‑94 (MQ=60)
GTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATT > SRR4302533.1588805/1‑94 (MQ=60)
GTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATT > SRR4302533.2494832/1‑94 (MQ=60)
AACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGT > SRR4302533.1929878/1‑94 (MQ=60)
ACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTT < SRR4302533.3865220/94‑1 (MQ=60)
ACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTT < SRR4302533.2608813/94‑1 (MQ=60)
CAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTG > SRR4302533.3287115/1‑94 (MQ=60)
CAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTG < SRR4302533.677233/94‑1 (MQ=60)
AAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGG < SRR4302533.2376008/94‑1 (MQ=60)
AAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGG > SRR4302533.4459370/1‑94 (MQ=60)
AACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCG > SRR4302533.3248207/1‑94 (MQ=60)
ACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGT > SRR4302533.2296277/1‑94 (MQ=60)
AGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATA < SRR4302533.5279321/94‑1 (MQ=60)
AGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATA < SRR4302533.5420705/94‑1 (MQ=60)
GGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATAA < SRR4302533.3900468/94‑1 (MQ=60)
GCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATAAG < SRR4302533.1878351/94‑1 (MQ=60)
GCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATAAGGA < SRR4302533.3134478/94‑1 (MQ=60)
GCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATAAGGA < SRR4302533.3576714/94‑1 (MQ=60)
|
AAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCACGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATAAGGA > NC_000913/3561319‑3561505
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
