Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,595,797 |
A→G |
G61G (GGA→GGG) |
yhhK → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,595,797 | 0 | A | G | 99.6%
| 876.7
/ NA
| 273 | G61G (GGA→GGG) | yhhK | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (150/122); minor base T (0/1); total (150/123) |
| Fisher's exact test for biased strand distribution p-value = 4.51e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 290 total aligned reads displayed.
ACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGAGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGG > NC_000913/3595707‑3595886
|
aGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCAc < 2:4920965/93‑1 (MQ=255)
ggTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACt > 1:1226777/1‑93 (MQ=255)
ggTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACt < 1:2892070/93‑1 (MQ=255)
tGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGa < 2:4650805/93‑1 (MQ=255)
gACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGAt > 2:5450913/1‑93 (MQ=255)
gACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGAt > 2:3324672/1‑93 (MQ=255)
aCGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGAtt > 1:896040/1‑93 (MQ=255)
aCGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGAtt > 1:3052182/1‑93 (MQ=255)
aCGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGAtt < 1:2804924/93‑1 (MQ=255)
aCGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGAtt > 1:2583702/1‑93 (MQ=255)
cGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTc < 2:6210262/93‑1 (MQ=255)
aTAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTccc > 2:5803161/1‑93 (MQ=255)
aTAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTccc > 2:1938343/1‑93 (MQ=255)
tAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCt < 2:4100811/93‑1 (MQ=255)
accaccGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTgc > 1:317816/1‑93 (MQ=255)
ccGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGt > 1:3250983/1‑93 (MQ=255)
ccGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGt > 1:3337150/1‑93 (MQ=255)
cGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGCTTCCCTGagcgcg > 1:3446706/1‑91 (MQ=255)
gTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGc > 1:4035756/1‑93 (MQ=255)
tATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCg > 2:29221/1‑93 (MQ=255)
aTCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCgg > 1:5488154/1‑93 (MQ=255)
aTCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCgg > 1:5104718/1‑93 (MQ=255)
tCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCggg < 1:3634024/93‑1 (MQ=255)
tCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCggg > 2:3022904/1‑93 (MQ=255)
tCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCggg > 2:5596860/1‑93 (MQ=255)
cTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGa < 1:3819597/93‑1 (MQ=255)
cTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGa > 1:4183264/1‑93 (MQ=255)
tACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGaa > 2:4297857/1‑93 (MQ=255)
cgccgcGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGt > 1:439604/1‑93 (MQ=255)
gccgcGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTc > 2:1409265/1‑93 (MQ=255)
gccgcGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTc > 2:3349046/1‑93 (MQ=255)
cgcgcgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCAc > 1:3959526/1‑93 (MQ=255)
cgcgcgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCAc > 2:3072831/1‑93 (MQ=255)
gcgcgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCAcc < 2:3935877/93‑1 (MQ=255)
cgcgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCcccc < 2:5397733/93‑1 (MQ=255)
cgcgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCAccc > 2:314917/1‑93 (MQ=255)
cgcgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCAccc < 2:810328/93‑1 (MQ=255)
cgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACccgc > 1:5234720/1‑93 (MQ=255)
cgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACccgc < 1:6032993/93‑1 (MQ=255)
gTTTAAACGGCCGCCTCCGCGCTGCCGTGGGGGTACCTTAAAGCGCCCCAGGGGGGGCACTGGATTCCCGGCGCGTGCGGGAAGTCCCccgcc < 2:3576212/93‑1 (MQ=255)
ttttAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACccgccg > 1:1002163/1‑93 (MQ=255)
ttttAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACccgccg > 2:709790/1‑93 (MQ=255)
ttttAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACccgccg > 1:1590240/1‑93 (MQ=255)
ttaaaCGAGCGCGTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCCCCCGCCGt < 2:1996461/90‑1 (MQ=255)
tAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTcg > 1:5311673/1‑93 (MQ=255)
aaCGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTcgc < 2:2132388/93‑1 (MQ=255)
cGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCgg < 2:3845546/93‑1 (MQ=255)
aGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGgtg < 1:5743765/93‑1 (MQ=255)
gcgcCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGgtgt < 1:183478/93‑1 (MQ=255)
gcgcCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGgtgt > 2:6019828/1‑93 (MQ=255)
gcgcCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGgtgt < 2:1536712/93‑1 (MQ=255)
gcgcCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGgtgt < 1:1800347/93‑1 (MQ=255)
cgcCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGtgtg < 2:3510344/93‑1 (MQ=255)
cgcCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGtgtg > 1:1345741/1‑93 (MQ=255)
gcCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTgg < 2:1776938/93‑1 (MQ=255)
cTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTgggg > 2:4590727/1‑93 (MQ=255)
cTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTgggg > 2:3807876/1‑93 (MQ=255)
cTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTgggg > 1:62931/1‑93 (MQ=255)
tGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGc < 1:5895253/93‑1 (MQ=255)
tGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGc > 2:5230377/1‑93 (MQ=255)
gCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCa > 1:724577/1‑93 (MQ=255)
gCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAatat > 1:2487950/1‑93 (MQ=255)
cTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATc > 1:4082861/1‑93 (MQ=255)
tGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCACTATct > 2:3172760/1‑93 (MQ=255)
gCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATctg > 1:4499397/1‑93 (MQ=255)
gCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATctg > 2:1600748/1‑93 (MQ=255)
ccGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATctgc > 1:2079569/1‑93 (MQ=255)
ccGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATctgc < 1:5732569/93‑1 (MQ=255)
ccGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATctgc > 2:3645097/1‑93 (MQ=255)
cGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATctgct < 2:252056/93‑1 (MQ=255)
gTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATctgctg > 2:514315/1‑93 (MQ=255)
tGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTgg > 1:843558/1‑93 (MQ=255)
gCGGGTATCCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGTGGTAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGa < 2:2603373/93‑1 (MQ=255)
cGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGaa < 1:2125156/93‑1 (MQ=255)
cGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGaa < 2:4408938/93‑1 (MQ=255)
gggTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAag < 1:5753927/93‑1 (MQ=255)
ggTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAaga < 2:2682660/93‑1 (MQ=255)
ggTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAaga < 2:1457782/93‑1 (MQ=255)
gTAACCTTAAGCGGCACCGAGGGTGCACTGGATTCCCTGCGCGTGCGTGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAagag < 1:3870065/93‑1 (MQ=255)
gTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCCCCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAagag < 2:1746359/93‑1 (MQ=255)
gTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAagag < 2:2397846/93‑1 (MQ=255)
tAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAgg > 1:2699621/1‑93 (MQ=255)
tAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAgg > 2:2274307/1‑93 (MQ=255)
acccTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGt < 2:4701546/91‑1 (MQ=255)
aaCCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGt > 2:2162359/1‑93 (MQ=255)
ccTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGttt < 1:4266206/93‑1 (MQ=255)
ttAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTg > 1:5081594/1‑93 (MQ=255)
ttAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTg > 1:4887789/1‑93 (MQ=255)
ttAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTg < 1:4597605/93‑1 (MQ=255)
ttAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTg < 1:1908707/93‑1 (MQ=255)
tAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGc < 1:1685078/93‑1 (MQ=255)
tAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGc < 1:228979/93‑1 (MQ=255)
ggCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAAc < 1:5593136/93‑1 (MQ=255)
gCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACa < 2:4473139/93‑1 (MQ=255)
cACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACaa < 2:1390409/93‑1 (MQ=255)
cGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATcc > 1:1444589/1‑93 (MQ=255)
cGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATcc > 2:1042777/1‑93 (MQ=255)
cGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATcc > 2:2867085/1‑93 (MQ=255)
ggggGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTgg < 2:5075419/93‑1 (MQ=255)
ggggGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTgg < 2:1664788/93‑1 (MQ=255)
|
ACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGAGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGG > NC_000913/3595707‑3595886
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGAGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGGCGT > NC_000913/3595704‑3595889
|
atcggtctcgtcattcctgctgaaccgctcttccgatctgctgtatGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGG < SRR4302533.1559082/48‑1 (MQ=60)
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGG > SRR4302533.2570553/1‑94 (MQ=60)
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGG > SRR4302533.1809977/1‑94 (MQ=60)
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGG > SRR4302533.3138910/1‑94 (MQ=60)
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGG < SRR4302533.5685177/94‑1 (MQ=60)
TTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTCAGCGGCACCGAGGGGG > SRR4302533.288937/1‑94 (MQ=60)
TACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGC < SRR4302533.3275284/94‑1 (MQ=60)
AGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACT > SRR4302533.1234125/1‑94 (MQ=60)
GGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTG > SRR4302533.3840652/1‑94 (MQ=60)
GGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTG > SRR4302533.3377835/1‑94 (MQ=60)
GGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTG < SRR4302533.2909849/94‑1 (MQ=60)
TGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGAT > SRR4302533.1532984/1‑94 (MQ=60)
GACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATT > SRR4302533.3070874/1‑94 (MQ=60)
GACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATT > SRR4302533.2599591/1‑94 (MQ=60)
GACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATT > SRR4302533.5822589/1‑94 (MQ=60)
GACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATT > SRR4302533.901303/1‑94 (MQ=60)
ACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTC < SRR4302533.2822188/94‑1 (MQ=60)
CGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCC > SRR4302533.5314924/1‑94 (MQ=60)
GATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCC > SRR4302533.6037557/1‑94 (MQ=60)
GATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCC > SRR4302533.1426576/1‑94 (MQ=60)
TAACCCCCGTATCTTCGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTG < SRR4302533.1443437/94‑1 (MQ=60)
AACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGC > SRR4302533.319766/1‑94 (MQ=60)
ACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCG < SRR4302533.982966/94‑1 (MQ=60)
ACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCG < SRR4302533.1345646/94‑1 (MQ=60)
ACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCG > SRR4302533.1235886/1‑94 (MQ=60)
CCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGC < SRR4302533.6199471/94‑1 (MQ=60)
CACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCG > SRR4302533.2839159/1‑94 (MQ=60)
CACCGTATCTACGCCGCGCGTTTTAACAAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCG > SRR4302533.4478150/1‑94 (MQ=60)
ACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGT > SRR4302533.3357773/1‑94 (MQ=60)
ACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGT > SRR4302533.3271031/1‑94 (MQ=60)
CCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGCTTCCCTGAGCGCG > SRR4302533.3467989/1‑94 (MQ=60)
CCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTG < SRR4302533.2093620/94‑1 (MQ=60)
CGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGC > SRR4302533.4060322/1‑94 (MQ=60)
CGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGC > SRR4302533.5820582/1‑94 (MQ=60)
GTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCG > SRR4302533.987644/1‑94 (MQ=60)
GTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCG < SRR4302533.1633135/94‑1 (MQ=60)
GTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCG < SRR4302533.4697942/94‑1 (MQ=60)
GTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCG < SRR4302533.5465644/94‑1 (MQ=60)
TATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGG > SRR4302533.5521241/1‑94 (MQ=60)
TATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGG > SRR4302533.5135554/1‑94 (MQ=60)
TCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGA < SRR4302533.3656377/94‑1 (MQ=60)
TCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGA > SRR4302533.2525011/1‑94 (MQ=60)
TCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGA > SRR4302533.4208595/1‑94 (MQ=60)
CTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAA < SRR4302533.3842955/94‑1 (MQ=60)
CTACCCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAA < SRR4302533.2300015/94‑1 (MQ=60)
TACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAG < SRR4302533.558349/94‑1 (MQ=60)
TACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAG < SRR4302533.2866034/94‑1 (MQ=60)
ACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGT < SRR4302533.3896762/94‑1 (MQ=60)
ACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGT < SRR4302533.1879656/94‑1 (MQ=60)
ACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGT > SRR4302533.442226/1‑94 (MQ=60)
CGCCNCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTC < SRR4302533.4311594/94‑1 (MQ=60)
GCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGcaa > SRR4302533.855782/1‑91 (MQ=60)
CCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCAC > SRR4302533.3983654/1‑94 (MQ=60)
CGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGGAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACC > SRR4302533.3864346/1‑94 (MQ=60)
GCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCC < SRR4302533.79175/94‑1 (MQ=60)
CGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCG > SRR4302533.823631/1‑94 (MQ=60)
GCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGC > SRR4302533.5266198/1‑94 (MQ=60)
GCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGC > SRR4302533.3500110/1‑94 (MQ=60)
CGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCTGCC > SRR4302533.5083229/1‑94 (MQ=60)
CGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCC < SRR4302533.6069554/94‑1 (MQ=60)
CGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGGGCGGGAAGTCACCCGCC > SRR4302533.15107/1‑94 (MQ=60)
GTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCG > SRR4302533.1008014/1‑94 (MQ=60)
GTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCG > SRR4302533.1599859/1‑94 (MQ=60)
TTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCG > SRR4302533.5343506/1‑94 (MQ=60)
TAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGC < SRR4302533.626939/94‑1 (MQ=60)
CGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGT < SRR4302533.3163612/94‑1 (MQ=60)
CGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGG > SRR4302533.2135188/1‑94 (MQ=60)
GAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTG > SRR4302533.2548947/1‑94 (MQ=60)
GAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTG < SRR4302533.3503626/94‑1 (MQ=60)
GAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTG < SRR4302533.208532/94‑1 (MQ=60)
AGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGT < SRR4302533.5778425/94‑1 (MQ=60)
GCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTG < SRR4302533.184619/94‑1 (MQ=60)
GCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTG < SRR4302533.4817625/94‑1 (MQ=60)
GCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTG > SRR4302533.1353839/1‑94 (MQ=60)
GCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTG < SRR4302533.1811300/94‑1 (MQ=60)
GCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGG > SRR4302533.2748931/1‑94 (MQ=60)
GCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGG < SRR4302533.2615682/94‑1 (MQ=60)
GCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGG < SRR4302533.577876/94‑1 (MQ=60)
CCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGG > SRR4302533.63344/1‑94 (MQ=60)
CTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGC > SRR4302533.4136564/1‑94 (MQ=60)
TGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCA < SRR4302533.5782389/94‑1 (MQ=60)
TGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCA > SRR4302533.728863/1‑94 (MQ=60)
TGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCA < SRR4302533.5930855/94‑1 (MQ=60)
GCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAA > SRR4302533.1680433/1‑94 (MQ=60)
GCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAA > SRR4302533.720330/1‑94 (MQ=60)
CTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAAT < SRR4302533.367188/94‑1 (MQ=60)
CGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATAT > SRR4302533.1837059/1‑94 (MQ=60)
CGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATAT > SRR4302533.2503273/1‑94 (MQ=60)
CGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATAT > SRR4302533.2806695/1‑94 (MQ=60)
GCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATC > SRR4302533.4107715/1‑94 (MQ=60)
GCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATC > SRR4302533.4917547/1‑94 (MQ=60)
CTGCCGTGGGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCT > SRR4302533.4532859/1‑94 (MQ=60)
TGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTG > SRR4302533.4381827/1‑94 (MQ=60)
TGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTG > SRR4302533.4526644/1‑94 (MQ=60)
GCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGC > SRR4302533.2092364/1‑94 (MQ=60)
CCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCT < SRR4302533.5767177/94‑1 (MQ=60)
CGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTG > SRR4302533.2977032/1‑94 (MQ=60)
CGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTG > SRR4302533.3289268/1‑94 (MQ=60)
CGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGAATTCCCTGCGCGTGCGGTAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTG < SRR4302533.3234534/94‑1 (MQ=60)
GTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGG > SRR4302533.525898/1‑94 (MQ=60)
GTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGG > SRR4302533.848489/1‑94 (MQ=60)
GTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGG > SRR4302533.4197517/1‑94 (MQ=60)
GTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGG > SRR4302533.5123780/1‑94 (MQ=60)
TGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGA > SRR4302533.5778128/1‑94 (MQ=60)
TGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGA < SRR4302533.5686529/94‑1 (MQ=60)
TGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGA > SRR4302533.5208414/1‑94 (MQ=60)
CGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAG < SRR4302533.2138258/94‑1 (MQ=60)
CGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAG < SRR4302533.4008594/94‑1 (MQ=60)
GGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGA < SRR4302533.5788642/94‑1 (MQ=60)
GGTAACCTTAAGCGGCACCGAGTGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCCGCGTTGCGGGGCGGGGCAATATCTGCTGGCAGAG > SRR4302533.408943/1‑94 (MQ=60)
GGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAG < SRR4302533.4064544/94‑1 (MQ=60)
GGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAG < SRR4302533.2381305/94‑1 (MQ=60)
GGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAG < SRR4302533.3979240/94‑1 (MQ=60)
GTAACCTTAAGCGGCACCGAGGGTGCACTGGATTCCCTGCGCGTGCGTGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGG < SRR4302533.3893690/94‑1 (MQ=60)
GTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGG > SRR4302533.2716180/1‑94 (MQ=60)
GTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGG > SRR4302533.2716181/1‑94 (MQ=60)
AACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTT < SRR4302533.4042950/94‑1 (MQ=60)
ACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTT < SRR4302533.5745566/94‑1 (MQ=60)
ACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTT < SRR4302533.461544/94‑1 (MQ=60)
CCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTT > SRR4302533.1730990/1‑94 (MQ=60)
CCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTT < SRR4302533.4291897/94‑1 (MQ=60)
CTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTG < SRR4302533.3291802/94‑1 (MQ=60)
CTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTG > SRR4302533.5112306/1‑94 (MQ=60)
CTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTG > SRR4302533.4917404/1‑94 (MQ=60)
CTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTG > SRR4302533.1695944/1‑94 (MQ=60)
TTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGC < SRR4302533.4625457/94‑1 (MQ=60)
TTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGC < SRR4302533.1920351/94‑1 (MQ=60)
TAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCG < SRR4302533.1695286/94‑1 (MQ=60)
TAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCG > SRR4302533.3208623/1‑94 (MQ=60)
TAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCG < SRR4302533.1995217/94‑1 (MQ=60)
TAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCG < SRR4302533.441449/94‑1 (MQ=60)
TAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCG < SRR4302533.230400/94‑1 (MQ=60)
GGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTA > SRR4302533.5121383/1‑94 (MQ=60)
AGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTA > SRR4302533.3845149/1‑94 (MQ=60)
AGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTA > SRR4302533.2495376/1‑94 (MQ=60)
CGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAAC > SRR4302533.874927/1‑94 (MQ=60)
GGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACA < SRR4302533.5626925/94‑1 (MQ=60)
GGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACA > SRR4302533.1876789/1‑94 (MQ=60)
ACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATC > SRR4302533.682382/1‑94 (MQ=60)
ACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATC < SRR4302533.4247176/94‑1 (MQ=60)
CCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCC < SRR4302533.5511371/94‑1 (MQ=60)
CCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCC > SRR4302533.1453304/1‑94 (MQ=60)
CCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCC < SRR4302533.1100881/94‑1 (MQ=60)
CGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCT > SRR4302533.5602692/1‑94 (MQ=60)
CGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCT < SRR4302533.3069808/94‑1 (MQ=60)
GAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTG > SRR4302533.6015932/1‑94 (MQ=60)
AGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGTGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGG > SRR4302533.5303230/1‑94 (MQ=60)
AGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGG > SRR4302533.4240690/1‑94 (MQ=60)
AGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGG < SRR4302533.1826700/94‑1 (MQ=60)
GGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGGC < SRR4302533.3175421/94‑1 (MQ=60)
GGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGGC > SRR4302533.927238/1‑94 (MQ=60)
GGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGGCG > SRR4302533.1437363/1‑94 (MQ=60)
GGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGGCGT > SRR4302533.2880557/1‑94 (MQ=60)
|
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGAGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGGCGT > NC_000913/3595704‑3595889
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
