Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,604,952	T→C	S291P (TCC→CCC)	zntA →	zinc‑transporting ATPase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,604,952	0	T	C	100.0%	851.7 / NA	266	S291P (TCC→CCC)	zntA	zinc‑transporting ATPase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (127/139); total (127/139)

Only 100 of 272 total aligned reads displayed.

ATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAATCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAA  >  NC_000913/3604862‑3605041

aTTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAAccc                                                                                         >  1:6030590/1‑93 (MQ=255)

  tGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCAt                                                                                       <  1:5717857/93‑1 (MQ=255)

  tGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCAt                                                                                       <  1:2844402/93‑1 (MQ=255)

    aaGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTc                                                                                     <  2:430209/93‑1 (MQ=255)

     aGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTcc                                                                                    >  2:1421645/1‑93 (MQ=255)

      gTCGCCGCAGGTGGTCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCg                                                                                   <  1:1041772/93‑1 (MQ=255)

      gTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCg                                                                                   <  2:4506346/93‑1 (MQ=255)

       tCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCgg                                                                                  <  2:1122181/93‑1 (MQ=255)

           cgcAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGa                                                                              >  1:6232298/1‑93 (MQ=255)

           cgcAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGa                                                                              <  1:5764309/93‑1 (MQ=255)

           cgcAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGa                                                                              <  1:5053125/93‑1 (MQ=255)

            gcAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAg                                                                             >  2:5620393/1‑93 (MQ=255)

            gcAGGTGGGCGTTTGCCTGACGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAg                                                                             >  2:6141094/1‑93 (MQ=255)

             cAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAgc                                                                            >  2:3267311/1‑93 (MQ=255)

              aGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAgcg                                                                           <  2:4730436/93‑1 (MQ=255)

               ggTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAgcgc                                                                          <  1:1234732/93‑1 (MQ=255)

               ggTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAgcgc                                                                          >  1:3620907/1‑93 (MQ=255)

               ggTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGAGCCCTGACCGGCGAACCCATTCCGGTGGAgcgc                                                                          >  1:4162281/1‑93 (MQ=255)

                 tGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAgcgcgc                                                                        <  2:5606087/93‑1 (MQ=255)

                  gggCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGCACCCATTCCGGTGGAGCGCGCa                                                                       >  1:3998094/1‑93 (MQ=255)

                   ggCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCaa                                                                      >  1:1453016/1‑93 (MQ=255)

                   ggCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCaa                                                                      <  2:4374391/93‑1 (MQ=255)

                   ggCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCaa                                                                      >  1:3546943/1‑93 (MQ=255)

                    gCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAAc                                                                     <  2:3334764/93‑1 (MQ=255)

                     ggTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACg                                                                    <  1:4360094/92‑1 (MQ=255)

                       tttGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACggg                                                                  <  2:2765121/93‑1 (MQ=255)

                        ttGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGc                                                                 >  2:645630/1‑93 (MQ=255)

                         tgcctgccGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCg                                                                >  2:586920/1‑93 (MQ=255)

                            ctgccGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATa                                                             >  2:4076045/1‑93 (MQ=255)

                             tgccGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATaa                                                            <  2:3960024/93‑1 (MQ=255)

                               ccGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAg                                                          >  2:2995129/1‑93 (MQ=255)

                                cGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAgc                                                         >  2:1195252/1‑92 (MQ=255)

                                cGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGt                                                         <  1:5819275/93‑1 (MQ=255)

                                cGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGt                                                         <  2:2203237/93‑1 (MQ=255)

                                 gACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTc                                                        <  2:2862581/93‑1 (MQ=255)

                                 gACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTc                                                        >  2:2610472/1‑93 (MQ=255)

                                 gACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTc                                                        <  2:3708342/93‑1 (MQ=255)

                                  atggTAAACTGCTCCCACCGTTTGCCAGTTTTGGTGAAAGCGCCCTGACCGGCGAACCCATTCCGCTGGAGCTCGCAATGGGCGATAAAGtac                                                       >  2:1297058/3‑91 (MQ=255)

                                  aCGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTcc                                                       <  1:5537385/93‑1 (MQ=255)

                                  aCGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTcc                                                       <  1:1627767/93‑1 (MQ=255)

                                  aCGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGCGCGATAAAGTcc                                                       >  1:2630661/1‑93 (MQ=255)

                                   cGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTccc                                                      <  1:4158034/93‑1 (MQ=255)

                                    ggTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAGGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCct                                                     <  2:1694659/93‑1 (MQ=255)

                                    ggTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCct                                                     <  1:2927836/93‑1 (MQ=255)

                                    ggTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCct                                                     <  1:650481/93‑1 (MQ=255)

                                     gTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCctg                                                    >  1:1074478/1‑93 (MQ=255)

                                     gTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCctg                                                    >  1:2379132/1‑93 (MQ=255)

                                       aaaCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCctgct                                                  <  1:3516407/93‑1 (MQ=255)

                                       aaaCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCctgct                                                  >  1:5443845/1‑93 (MQ=255)

                                       aaaCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCctgct                                                  >  1:4718033/1‑93 (MQ=255)

                                        aaCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCctgctg                                                 >  2:857709/1‑93 (MQ=255)

                                        aaCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCctgctg                                                 <  1:5637385/93‑1 (MQ=255)

                                        aaCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCctgctg                                                 >  2:2464096/1‑93 (MQ=255)

                                         aCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTgg                                                >  1:957388/1‑93 (MQ=255)

                                         aCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTgg                                                >  1:5605831/1‑93 (MQ=255)

                                         aCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTgg                                                <  2:4223729/93‑1 (MQ=255)

                                         aCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTgg                                                >  1:3363587/1‑93 (MQ=255)

                                           tGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTg                                              >  1:1784583/1‑93 (MQ=255)

                                            gCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGc                                             >  2:1492884/1‑93 (MQ=255)

                                             ctctCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGcc                                            <  1:1913077/93‑1 (MQ=255)

                                              tctcACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGcca                                           >  1:6271033/1‑93 (MQ=255)

                                              tctcACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGcca                                           >  2:4877972/1‑93 (MQ=255)

                                                tcACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGccacc                                         <  1:2140900/93‑1 (MQ=255)

                                                tcACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGccacc                                         <  2:1971518/93‑1 (MQ=255)

                                                tcAACGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTgccgcc                                         <  2:5486913/93‑1 (MQ=255)

                                                 cACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGccacca                                        >  2:2685082/1‑93 (MQ=255)

                                                  aCCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAg                                       >  2:796224/1‑93 (MQ=255)

                                                   ccGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGc                                      >  1:2564127/1‑93 (MQ=255)

                                                   ccGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGc                                      <  2:1669299/93‑1 (MQ=255)

                                                   ccGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGc                                      <  1:3834509/93‑1 (MQ=255)

                                                      tttGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTa                                   <  1:5220506/93‑1 (MQ=255)

                                                         gCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGAc                                <  1:4996267/93‑1 (MQ=255)

                                                         gCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGAc                                <  1:2579612/93‑1 (MQ=255)

                                                          ccAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGAcc                               >  2:4534613/1‑93 (MQ=255)

                                                           cAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCg                              >  1:6200274/1‑93 (MQ=255)

                                                            aGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGt                             <  2:4143030/93‑1 (MQ=255)

                                                             gTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTc                            >  2:2278693/1‑93 (MQ=255)

                                                              ttttGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCt                           <  1:3694065/93‑1 (MQ=255)

                                                                  gatgaAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTg                       <  2:732429/93‑1 (MQ=255)

                                                                  gatgaAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTg                       <  2:2004788/93‑1 (MQ=255)

                                                                  gatgaAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTg                       >  1:202735/1‑93 (MQ=255)

                                                                       aaGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGtt                  <  1:3926064/93‑1 (MQ=255)

                                                                        aGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTg                 >  2:2982290/1‑93 (MQ=255)

                                                                        aGCGCCCTGACCGGCGAACCCATTCCGGCGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTg                 >  2:1884278/1‑93 (MQ=255)

                                                                         gcgcCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTgg                <  1:4504931/93‑1 (MQ=255)

                                                                         gcgcCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACAAGCGTAGACCGTCTGGTGACGTTgg                >  1:4066612/1‑93 (MQ=255)

                                                                          cgcCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGa               >  1:4886295/1‑93 (MQ=255)

                                                                           gcCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGaa              <  1:813451/93‑1 (MQ=255)

                                                                             ccTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGGGACGTTGGAAgg            >  1:3262660/1‑92 (MQ=255)

                                                                               tGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGc          >  2:4470457/1‑93 (MQ=255)

                                                                               tGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGc          <  2:5766073/93‑1 (MQ=255)

                                                                                 aCCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGGCGATGGAAGTGCTg        >  2:946441/1‑93 (MQ=255)

                                                                                 aCCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTg        <  1:5386862/93‑1 (MQ=255)

                                                                                  ccGGCGAGCCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGt       <  2:4853595/93‑1 (MQ=255)

                                                                                   cGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTc      >  1:4643047/1‑93 (MQ=255)

                                                                                    ggCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGGAGTGCTGTCa     >  2:3567036/1‑93 (MQ=255)

                                                                                    ggCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCa     <  2:5154084/93‑1 (MQ=255)

                                                                                    ggCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCa     >  2:4096485/1‑93 (MQ=255)

                                                                                     gCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAg    >  2:5363057/1‑93 (MQ=255)

                                                                                       gAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGaa  >  2:3451399/1‑93 (MQ=255)

ATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAATCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAA  >  NC_000913/3604862‑3605041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTGATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAATCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGG  >  NC_000913/3604859‑3605045

GTGATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAAC                                                                                               <  SRR4302533.4053353/94‑1 (MQ=60)

GTGATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAAC                                                                                               <  SRR4302533.4391924/94‑1 (MQ=60)

GTGATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAAC                                                                                               >  SRR4302533.3386824/1‑94 (MQ=60)

GTGATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAAC                                                                                               <  SRR4302533.270441/94‑1 (MQ=60)

  GATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCC                                                                                             >  SRR4302533.6067137/1‑94 (MQ=60)

   ATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCA                                                                                            >  SRR4302533.4187260/1‑94 (MQ=60)

     TGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATT                                                                                          <  SRR4302533.410074/94‑1 (MQ=60)

     TGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATT                                                                                          <  SRR4302533.934181/94‑1 (MQ=60)

     TGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATT                                                                                          <  SRR4302533.5752388/94‑1 (MQ=60)

     TGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATT                                                                                          <  SRR4302533.83858/94‑1 (MQ=60)

     TGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATT                                                                                          <  SRR4302533.669004/94‑1 (MQ=60)

     TGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATT                                                                                          <  SRR4302533.574635/94‑1 (MQ=60)

     TGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATT                                                                                          <  SRR4302533.2861906/94‑1 (MQ=60)

      GAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTC                                                                                         <  SRR4302533.321563/94‑1 (MQ=60)

      GAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTC                                                                                         <  SRR4302533.6124227/94‑1 (MQ=60)

       AAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCC                                                                                        <  SRR4302533.2922416/94‑1 (MQ=60)

       AAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCC                                                                                        <  SRR4302533.5830396/94‑1 (MQ=60)

        AGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCG                                                                                       >  SRR4302533.4732855/1‑94 (MQ=60)

        AGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCG                                                                                       <  SRR4302533.1925436/94‑1 (MQ=60)

         GTCGCCGCAGGTGGTCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGG                                                                                      <  SRR4302533.1047897/94‑1 (MQ=60)

         GTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGG                                                                                      >  SRR4302533.4978731/1‑94 (MQ=60)

         GTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGG                                                                                      <  SRR4302533.4543618/94‑1 (MQ=60)

           CGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTG                                                                                    >  SRR4302533.390321/1‑94 (MQ=60)

           CGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTG                                                                                    <  SRR4302533.2626942/94‑1 (MQ=60)

             CCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGA                                                                                  >  SRR4302533.6269621/1‑94 (MQ=60)

              CGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAG                                                                                 <  SRR4302533.5799097/94‑1 (MQ=60)

              CGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAG                                                                                 <  SRR4302533.5083677/94‑1 (MQ=60)

                CAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCG                                                                               <  SRR4302533.3355351/94‑1 (MQ=60)

                 AGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGC                                                                              >  SRR4302533.3643186/1‑94 (MQ=60)

                 AGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGAGCCCTGACCGGCGAACCCATTCCGGTGGAGCGC                                                                              >  SRR4302533.4187503/1‑94 (MQ=60)

                  GGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCG                                                                             >  SRR4302533.5671240/1‑94 (MQ=60)

                  GGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCG                                                                             >  SRR4302533.3728501/1‑94 (MQ=60)

                  GGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCG                                                                             <  SRR4302533.1242113/94‑1 (MQ=60)

                    TGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGCACCCATTCCGGTGGAGCGCGCA                                                                           >  SRR4302533.4022436/1‑94 (MQ=60)

                     GGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAA                                                                          >  SRR4302533.3568804/1‑94 (MQ=60)

                     GGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAA                                                                          >  SRR4302533.1461781/1‑94 (MQ=60)

                     GGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAA                                                                          <  SRR4302533.5099997/94‑1 (MQ=60)

                        GGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGG                                                                       <  SRR4302533.4386413/94‑1 (MQ=60)

                        CGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGG                                                                       <  SRR4302533.1222481/94‑1 (MQ=60)

                        CGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGG                                                                       <  SRR4302533.1678662/94‑1 (MQ=60)

                         GTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGG                                                                      >  SRR4302533.5778208/1‑94 (MQ=60)

                         GTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGG                                                                      <  SRR4302533.5884647/94‑1 (MQ=60)

                           TTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCG                                                                    <  SRR4302533.5073129/94‑1 (MQ=60)

                             GCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGAT                                                                  >  SRR4302533.4057281/1‑94 (MQ=60)

                               CTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAA                                                                <  SRR4302533.409390/94‑1 (MQ=60)

                               CTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAA                                                                >  SRR4302533.2927846/1‑94 (MQ=60)

                               CTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAA                                                                >  SRR4302533.5517847/1‑94 (MQ=60)

                                tgaccACGGTAAACTGCTCTCACCGTTTGCCAGTTTGGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAA                                                               <  SRR4302533.1258913/89‑1 (MQ=60)

                                 GCCGACGGTAAACTGCTCTCGCCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAG                                                              <  SRR4302533.3326281/94‑1 (MQ=60)

                                  CCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGT                                                             <  SRR4302533.5436816/94‑1 (MQ=60)

                                   CGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTC                                                            <  SRR4302533.5854425/94‑1 (MQ=60)

                                    GACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGCGCGATAAAGTCC                                                           >  SRR4302533.2646826/1‑94 (MQ=60)

                                     ACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCC                                                          >  SRR4302533.210855/1‑94 (MQ=60)

                                     ACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCC                                                          <  SRR4302533.1637626/94‑1 (MQ=60)

                                     ACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCC                                                          <  SRR4302533.5570827/94‑1 (MQ=60)

                                      CGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCT                                                         <  SRR4302533.4183229/94‑1 (MQ=60)

                                       GGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTG                                                        <  SRR4302533.3991706/94‑1 (MQ=60)

                                       GGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTG                                                        <  SRR4302533.654322/94‑1 (MQ=60)

                                       GGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTG                                                        >  SRR4302533.1080811/1‑94 (MQ=60)

                                       GGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTG                                                        >  SRR4302533.2393851/1‑94 (MQ=60)

                                       GGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTG                                                        >  SRR4302533.4682176/1‑94 (MQ=60)

                                       GGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTG                                                        <  SRR4302533.5256258/94‑1 (MQ=60)

                                       GGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTG                                                        <  SRR4302533.5110943/94‑1 (MQ=60)

                                       GGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTG                                                        <  SRR4302533.2945749/94‑1 (MQ=60)

                                        GTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGC                                                       <  SRR4302533.449961/94‑1 (MQ=60)

                                         TAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCT                                                      >  SRR4302533.5476644/1‑94 (MQ=60)

                                         TAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCT                                                      >  SRR4302533.4746643/1‑94 (MQ=60)

                                          AAACTGCTCTCGCCGTTTGCCAGTTTTGAGGAAAGCGCCCTGACCGGCGACCCCATTCCGGTGGACCGCGCAACGGGCGATAAAGTCCCTGCTG                                                     <  SRR4302533.2795783/94‑1 (MQ=60)

                                          AAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTG                                                     <  SRR4302533.3538087/94‑1 (MQ=60)

                                          AAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTG                                                     <  SRR4302533.4818864/94‑1 (MQ=60)

                                           AACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGG                                                    >  SRR4302533.5639704/1‑94 (MQ=60)

                                           AACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGG                                                    <  SRR4302533.5671472/94‑1 (MQ=60)

                                           AACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGG                                                    >  SRR4302533.963017/1‑94 (MQ=60)

                                           AACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGG                                                    >  SRR4302533.3384370/1‑94 (MQ=60)

                                            ACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGT                                                   <  SRR4302533.3560936/94‑1 (MQ=60)

                                            ACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGT                                                   <  SRR4302533.1563290/94‑1 (MQ=60)

                                             CTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTG                                                  >  SRR4302533.1343973/1‑94 (MQ=60)

                                             CTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTG                                                  >  SRR4302533.1795434/1‑94 (MQ=60)

                                                CTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCA                                               <  SRR4302533.1924751/94‑1 (MQ=60)

                                                CTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCA                                               >  SRR4302533.4293360/1‑94 (MQ=60)

                                                CTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCA                                               >  SRR4302533.6308494/1‑94 (MQ=60)

                                                   TCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCA                                            <  SRR4302533.3810629/94‑1 (MQ=60)

                                                   TCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCA                                            <  SRR4302533.75481/94‑1 (MQ=60)

                                                   TCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCA                                            <  SRR4302533.2154095/94‑1 (MQ=60)

                                                    CACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAATGGGCGATAAAGTCCCTGCTGGTGCCACCAG                                           >  SRR4302533.561280/1‑94 (MQ=60)

                                                    CACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAG                                           >  SRR4302533.1061287/1‑94 (MQ=60)

                                                    CACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAG                                           >  SRR4302533.561436/1‑94 (MQ=60)

                                                    CACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAG                                           >  SRR4302533.3486706/1‑94 (MQ=60)

                                                     ACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGC                                          >  SRR4302533.2579908/1‑94 (MQ=60)

                                                     ACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGC                                          <  SRR4302533.263295/94‑1 (MQ=60)

                                                      CCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCG                                         <  SRR4302533.3857941/94‑1 (MQ=60)

                                                      CCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCG                                         >  SRR4302533.6245588/1‑94 (MQ=60)

                                                       CGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGT                                        >  SRR4302533.6278127/1‑94 (MQ=60)

                                                        GTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTA                                       >  SRR4302533.2384308/1‑94 (MQ=60)

                                                         TTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAG                                      <  SRR4302533.1980931/94‑1 (MQ=60)

                                                         TTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAG                                      <  SRR4302533.2406424/94‑1 (MQ=60)

                                                         TTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAG                                      <  SRR4302533.4064022/94‑1 (MQ=60)

                                                         TTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAG                                      <  SRR4302533.5251924/94‑1 (MQ=60)

                                                          TTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGA                                     <  SRR4302533.6245169/94‑1 (MQ=60)

                                                            GCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACC                                   >  SRR4302533.3703081/1‑94 (MQ=60)

                                                            GCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACC                                   <  SRR4302533.2595486/94‑1 (MQ=60)

                                                            GCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACC                                   <  SRR4302533.5026555/94‑1 (MQ=60)

                                                             CCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCG                                  >  SRR4302533.6237465/1‑94 (MQ=60)

                                                             CCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCG                                  <  SRR4302533.1871424/94‑1 (MQ=60)

                                                             CCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCG                                  >  SRR4302533.644062/1‑94 (MQ=60)

                                                              CAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGT                                 >  SRR4302533.5764888/1‑94 (MQ=60)

                                                               AGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTC                                >  SRR4302533.5493639/1‑94 (MQ=60)

                                                                GTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCT                               <  SRR4302533.6112157/94‑1 (MQ=60)

                                                                GTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCT                               >  SRR4302533.5283081/1‑94 (MQ=60)

                                                                GTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCT                               <  SRR4302533.3604942/94‑1 (MQ=60)

                                                                GTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCT                               >  SRR4302533.4922690/1‑94 (MQ=60)

                                                                GTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCT                               >  SRR4302533.5825552/1‑94 (MQ=60)

                                                                GCTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCT                               >  SRR4302533.2486363/1‑94 (MQ=60)

                                                                 TTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTGCCTGCTTGTGCCACCAGCGTAGACGGTCTG                              >  SRR4302533.1855184/1‑94 (MQ=60)

                                                                 TTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTG                              <  SRR4302533.3716756/94‑1 (MQ=60)

                                                                  TTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGG                             >  SRR4302533.442556/1‑94 (MQ=60)

                                                                    TGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTG                           >  SRR4302533.204022/1‑94 (MQ=60)

                                                                      ATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGAC                         <  SRR4302533.1734947/94‑1 (MQ=60)

                                                                         AAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTT                      <  SRR4302533.4228278/94‑1 (MQ=60)

                                                                         AAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTT                      >  SRR4302533.2582216/1‑94 (MQ=60)

                                                                         AAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACAGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTT                      >  SRR4302533.3406638/1‑94 (MQ=60)

                                                                          AAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTG                     <  SRR4302533.3950034/94‑1 (MQ=60)

                                                                           AGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGG                    <  SRR4302533.2683090/94‑1 (MQ=60)

                                                                           AGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGA                    >  SRR4302533.3988133/1‑94 (MQ=60)

                                                                           AGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACAAGCGTAGACCGTCTGGTGACGTTGG                    >  SRR4302533.4091367/1‑94 (MQ=60)

                                                                            GCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGA                   >  SRR4302533.4915901/1‑94 (MQ=60)

                                                                            GCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGA                   <  SRR4302533.4532220/94‑1 (MQ=60)

                                                                             CGCCGTGCCCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTGCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAA                  <  SRR4302533.5060958/94‑1 (MQ=60)

                                                                              GCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGAGCGTCTGGTGACGTTGGAAG                 >  SRR4302533.3666441/1‑94 (MQ=60)

                                                                              GCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAG                 <  SRR4302533.818212/94‑1 (MQ=60)

                                                                               CCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGT                >  SRR4302533.6294189/1‑94 (MQ=60)

                                                                               CCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGG                >  SRR4302533.4767248/1‑94 (MQ=60)

                                                                               CCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGGGACGTTGGAAGG                >  SRR4302533.3282789/1‑94 (MQ=60)

                                                                                CCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTG               >  SRR4302533.5648705/1‑94 (MQ=60)

                                                                                  TGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCT             <  SRR4302533.2359935/94‑1 (MQ=60)

                                                                                  TGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCT             >  SRR4302533.5238990/1‑94 (MQ=60)

                                                                                    ACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGT           <  SRR4302533.5419227/94‑1 (MQ=60)

                                                                                    ACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGT           >  SRR4302533.133857/1‑94 (MQ=60)

                                                                                     CCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTC          >  SRR4302533.4671177/1‑94 (MQ=60)

                                                                                     CCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTC          <  SRR4302533.3578660/94‑1 (MQ=60)

                                                                                      CGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCA         >  SRR4302533.1211533/1‑94 (MQ=60)

                                                                                            ACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCG   <  SRR4302533.3481949/94‑1 (MQ=60)

                                                                                            ACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGCGACGTTGGAAGTGCTGTCAGAACCG   >  SRR4302533.950720/1‑94 (MQ=60)

                                                                                             CCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGGAGTGCTGTCAGAAACGG  >  SRR4302533.5791295/1‑94 (MQ=60)

                                                                                             CCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGGTGTCAGAACCGG  >  SRR4302533.1489145/1‑94 (MQ=60)

                                                                                             CCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGG  >  SRR4302533.3267789/1‑94 (MQ=60)

GTGATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAATCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGG  >  NC_000913/3604859‑3605045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`