Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,607,249 T→C R134R (CGT→CGC)  yhhQ → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,607,2490TC91.9% 1146.6 / 72.1 432R134R (CGT→CGC) yhhQhypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (20/15);  new base C (230/166);  total (251/181)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.28e-01

Only 100 of 465 total aligned reads displayed.

TCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTG  >  NC_000913/3607158‑3607338
                                                                                           |                                                                                         
   aCCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCaga                                                                                       <  2:9883277/93‑1 (MQ=255)
    ccTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCagag                                                                                      <  1:2624989/93‑1 (MQ=255)
    ccTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCagag                                                                                      <  2:6839575/93‑1 (MQ=255)
    ccTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCagag                                                                                      >  2:1748887/1‑93 (MQ=255)
      tGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTc                                                                                    >  2:6061580/1‑93 (MQ=255)
      tGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTc                                                                                    >  1:1452617/1‑93 (MQ=255)
        tttGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTcgc                                                                                  >  1:8012467/1‑93 (MQ=255)
        tttGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTcgc                                                                                  <  1:931318/93‑1 (MQ=255)
        tttGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTcgc                                                                                  <  2:1532786/93‑1 (MQ=255)
         ttGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTcgcc                                                                                 >  1:1652377/1‑93 (MQ=255)
          tGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTcgccg                                                                                <  2:4430109/93‑1 (MQ=255)
           gTCGCCCGTATCGCCCCCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTcgccgc                                                                               <  2:8568020/93‑1 (MQ=255)
           gTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTcgccgc                                                                               >  2:3236334/1‑93 (MQ=255)
              gCCAGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCtgg                                                                            <  1:9398792/93‑1 (MQ=255)
               cccGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCtggt                                                                           <  1:8409755/93‑1 (MQ=255)
               cccGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCtggt                                                                           <  1:4725430/93‑1 (MQ=255)
                 cGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCtggtgg                                                                         >  2:2066790/1‑93 (MQ=255)
                 cGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCtggtgg                                                                         >  2:5048924/1‑93 (MQ=255)
                 cGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCtggtgg                                                                         >  2:3462833/1‑93 (MQ=255)
                 cGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCtggtgg                                                                         >  1:698513/1‑93 (MQ=255)
                  gTATCGCCACCGCCAGTTTCATGGCCTAGGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGtggc                                                                        >  2:9678691/1‑93 (MQ=255)
                  gTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTTGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGtggc                                                                        >  1:1572030/1‑93 (MQ=255)
                  gTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGtggc                                                                        <  2:380001/93‑1 (MQ=255)
                   tATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGtggct                                                                       >  1:6878572/1‑93 (MQ=255)
                   tATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGtggct                                                                       <  2:27252/93‑1 (MQ=255)
                   tATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGtggct                                                                       >  1:4981118/1‑93 (MQ=255)
                        ccACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCAc                                                                  >  2:1031597/1‑93 (MQ=255)
                         cACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCAcc                                                                 >  1:8846468/1‑93 (MQ=255)
                         cACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTAGCTGGCAcc                                                                 >  1:2825999/1‑93 (MQ=255)
                           ccGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGa                                                               >  2:114640/1‑93 (MQ=255)
                            cGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGAc                                                              <  2:7938826/93‑1 (MQ=255)
                            cGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGAc                                                              <  1:5319059/93‑1 (MQ=255)
                              ccAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAg                                                            >  1:2115050/1‑93 (MQ=255)
                              ccAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAg                                                            <  2:6180540/93‑1 (MQ=255)
                                  tttCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGTGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTc                                                        >  1:3333044/1‑93 (MQ=255)
                                  tttCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTc                                                        <  2:5283929/93‑1 (MQ=255)
                                  tttCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTc                                                        >  2:1000531/1‑93 (MQ=255)
                                  tttCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTc                                                        >  2:5967532/1‑93 (MQ=255)
                                  tttCATGGCCTAAGCGCTGGGGCAAATCCTCGACGTGCACGCTTTTAACCGCCTGCGCCAGAGTAGCCGCTGGTGGCTGGCAACGACACCGTc                                                        >  2:4276623/1‑93 (MQ=255)
                                   ttCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCGGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTcc                                                       <  1:1728072/93‑1 (MQ=255)
                                    tCAGGGCCTCCGCGCGGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCca                                                      <  2:7595788/93‑1 (MQ=255)
                                      acggCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCcaca                                                    <  2:1418889/91‑1 (MQ=255)
                                      aTGCCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTACCCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCcaca                                                    <  2:7196963/93‑1 (MQ=255)
                                       tGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCacac                                                   <  2:9353598/93‑1 (MQ=255)
                                         gCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCGCACTg                                                 >  1:2288072/1‑93 (MQ=255)
                                         gCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTg                                                 >  2:9145793/1‑93 (MQ=255)
                                           cTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGtt                                               >  1:3719100/1‑93 (MQ=255)
                                            tACGCTCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTc                                              <  2:2352998/93‑1 (MQ=255)
                                            tACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTc                                              >  1:9018044/1‑93 (MQ=255)
                                             aCGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCg                                             >  2:4694975/1‑93 (MQ=255)
                                               gcgcTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCggg                                           >  1:3532762/1‑92 (MQ=255)
                                               gcgcTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGt                                           >  1:6182147/1‑93 (MQ=255)
                                                 gcTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTaa                                         <  1:5917457/93‑1 (MQ=255)
                                                 gcTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTaa                                         >  1:6514217/1‑93 (MQ=255)
                                                   tGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACCGCGTCCACACTGTTCGGTAACg                                       >  1:2538144/1‑93 (MQ=255)
                                                   tGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACg                                       >  2:7042707/1‑93 (MQ=255)
                                                     gggCAAATCCTCAACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTc                                     >  1:3157783/1‑93 (MQ=255)
                                                       gCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAg                                   <  1:5625450/93‑1 (MQ=255)
                                                        cAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGc                                  >  1:5790190/1‑93 (MQ=255)
                                                        cAAACCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGc                                  <  2:4842355/93‑1 (MQ=255)
                                                         aaaTCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCg                                 >  1:3825765/1‑93 (MQ=255)
                                                          aaTCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGa                                >  2:899232/1‑93 (MQ=255)
                                                           aTCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGac                               >  2:5652264/1‑93 (MQ=255)
                                                            tCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGaca                              <  1:9147627/93‑1 (MQ=255)
                                                              cTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACg                            <  1:7660828/93‑1 (MQ=255)
                                                                 gACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTg                         <  1:7243804/93‑1 (MQ=255)
                                                                  aCGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTgg                        >  1:4020187/1‑93 (MQ=255)
                                                                  aCGTGCACGTTTCTAACCGCCTGCGCCATAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTgg                        <  1:4487620/93‑1 (MQ=255)
                                                                    gTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGcc                      <  1:1202078/93‑1 (MQ=255)
                                                                    gTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGcc                      <  2:2790334/93‑1 (MQ=255)
                                                                     tGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCt                     <  2:805048/93‑1 (MQ=255)
                                                                     tGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCt                     >  2:631239/1‑93 (MQ=255)
                                                                        gcGTTTTAACCCGCCTGCGCCAGAGTCGCCGCGGGTGGCTGGCACCGCCAGCGTCCGCACTGTTCGGTAACGTCAGCGACACGCTGGCCtttt                  <  1:712052/92‑1 (MQ=255)
                                                                        aCGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCtttt                  >  2:7781236/1‑93 (MQ=255)
                                                                        aCGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCtttt                  >  1:6050811/1‑93 (MQ=255)
                                                                         cGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCttttt                 >  2:8635805/1‑93 (MQ=255)
                                                                          gTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTttc                >  2:1651936/1‑93 (MQ=255)
                                                                           tttttAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTttct               >  2:8346676/1‑93 (MQ=255)
                                                                           tttttAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTttct               >  1:5551953/1‑93 (MQ=255)
                                                                           tttttAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTttct               >  1:9634587/1‑93 (MQ=255)
                                                                            ttttAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCtttttttt              >  1:2161353/1‑93 (MQ=255)
                                                                            ttttAACCGCCTGCGACAGAGACGCCGCTGGAGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTttctt              >  2:5459514/1‑93 (MQ=255)
                                                                             tttAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTttcttc             >  2:5385964/1‑93 (MQ=255)
                                                                             tttAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTttcttc             >  1:9867659/1‑93 (MQ=255)
                                                                               tAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCAt           >  1:8057503/1‑93 (MQ=255)
                                                                                aaCCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACGCGCTGGCCTTTTTCTTCAtt          <  2:302472/93‑1 (MQ=255)
                                                                                aaCCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCAtt          <  1:8639773/93‑1 (MQ=255)
                                                                                   cGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGcc       <  1:1991393/93‑1 (MQ=255)
                                                                                   cGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGcc       >  1:8512357/1‑93 (MQ=255)
                                                                                   cGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGcc       >  1:1286351/1‑93 (MQ=255)
                                                                                    gCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCt      <  2:5741749/93‑1 (MQ=255)
                                                                                     ccTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCtt     <  2:409010/93‑1 (MQ=255)
                                                                                     ccTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCtt     >  1:1025763/1‑93 (MQ=255)
                                                                                     ccTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCtt     >  1:5139619/1‑93 (MQ=255)
                                                                                      cTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTc    >  1:6377530/1‑93 (MQ=255)
                                                                                      cTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTc    <  2:6017978/93‑1 (MQ=255)
                                                                                      cTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTc    <  2:249261/93‑1 (MQ=255)
                                                                                       tGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCt   >  1:4247046/1‑93 (MQ=255)
                                                                                       tGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCt   <  1:7434450/93‑1 (MQ=255)
                                                                                        gcgcCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTg  <  2:6915018/93‑1 (MQ=255)
                                                                                           |                                                                                         
TCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTG  >  NC_000913/3607158‑3607338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 259 total aligned reads displayed.
CTTCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTGGCGT  >  NC_000913/3607156‑3607342
                                                                                             |                                                                                             
CTTCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGC                                                                                               >  SRR4302540.6092946/1‑94 (MQ=60)
CTTCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGC                                                                                               >  SRR4302540.4778128/1‑94 (MQ=60)
 TTCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCC                                                                                              >  SRR4302540.420922/1‑94 (MQ=60)
 TTCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCC                                                                                              >  SRR4302540.2140592/1‑94 (MQ=60)
 TTCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCC                                                                                              >  SRR4302540.5533384/1‑94 (MQ=60)
 TTCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCC                                                                                              >  SRR4302540.58917/1‑94 (MQ=60)
  TCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCA                                                                                             <  SRR4302540.2129962/94‑1 (MQ=60)
  TCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCA                                                                                             <  SRR4302540.2129963/94‑1 (MQ=60)
   CAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAG                                                                                            >  SRR4302540.4239252/1‑94 (MQ=60)
   CAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAG                                                                                            >  SRR4302540.2648750/1‑94 (MQ=60)
   CAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAG                                                                                            >  SRR4302540.1239152/1‑94 (MQ=60)
   CAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAG                                                                                            >  SRR4302540.6013770/1‑94 (MQ=60)
    AACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGA                                                                                           <  SRR4302540.3335778/94‑1 (MQ=60)
     ACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAG                                                                                          <  SRR4302540.2152134/94‑1 (MQ=60)
     ACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAG                                                                                          >  SRR4302540.3295497/1‑94 (MQ=60)
      CCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGT                                                                                         <  SRR4302540.2653376/94‑1 (MQ=60)
       CTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTC                                                                                        >  SRR4302540.1468416/1‑94 (MQ=60)
        TGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCG                                                                                       <  SRR4302540.4608426/94‑1 (MQ=60)
         GTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGC                                                                                      >  SRR4302540.8105667/1‑94 (MQ=60)
          TTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCC                                                                                     <  SRR4302540.96435/94‑1 (MQ=60)
          TTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCC                                                                                     >  SRR4302540.1670390/1‑94 (MQ=60)
          TTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCC                                                                                     >  SRR4302540.1670391/1‑94 (MQ=60)
          TTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCC                                                                                     <  SRR4302540.941104/94‑1 (MQ=60)
           TTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCG                                                                                    <  SRR4302540.4671536/94‑1 (MQ=60)
            TGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGC                                                                                   <  SRR4302540.1743840/94‑1 (MQ=60)
             GTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCT                                                                                  <  SRR4302540.9280938/94‑1 (MQ=60)
             GTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCT                                                                                  <  SRR4302540.6235363/94‑1 (MQ=60)
              TCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTG                                                                                 <  SRR4302540.8421842/94‑1 (MQ=60)
              TCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTG                                                                                 >  SRR4302540.7251631/1‑94 (MQ=60)
               CGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGG                                                                                >  SRR4302540.6607457/1‑94 (MQ=60)
               CGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGG                                                                                >  SRR4302540.6607170/1‑94 (MQ=60)
               CGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGG                                                                                >  SRR4302540.8970109/1‑94 (MQ=60)
                GCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGT                                                                               <  SRR4302540.5060325/94‑1 (MQ=60)
                GCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGT                                                                               <  SRR4302540.5326346/94‑1 (MQ=60)
                GCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGG                                                                               >  SRR4302540.3521973/1‑94 (MQ=60)
                GCCAGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGT                                                                               <  SRR4302540.9510612/94‑1 (MQ=60)
                 CCCGTATCGCCCCCGCCACTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTG                                                                              <  SRR4302540.3519225/94‑1 (MQ=60)
                 CCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTG                                                                              <  SRR4302540.696891/94‑1 (MQ=60)
                 CCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTG                                                                              >  SRR4302540.9912538/1‑94 (MQ=60)
                 CCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTG                                                                              <  SRR4302540.8507365/94‑1 (MQ=60)
                 CCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTG                                                                              >  SRR4302540.9753729/1‑94 (MQ=60)
                  CCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGG                                                                             <  SRR4302540.9278417/94‑1 (MQ=60)
                  CCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGG                                                                             >  SRR4302540.706007/1‑94 (MQ=60)
                   CGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTTGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGC                                                                            >  SRR4302540.1589254/1‑94 (MQ=60)
                    GTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCT                                                                           >  SRR4302540.6522575/1‑94 (MQ=60)
                    GTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCT                                                                           >  SRR4302540.2284720/1‑94 (MQ=60)
                    GTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCT                                                                           >  SRR4302540.6954815/1‑94 (MQ=60)
                    GTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCT                                                                           >  SRR4302540.9131612/1‑94 (MQ=60)
                    GTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCT                                                                           >  SRR4302540.5652388/1‑94 (MQ=60)
                    GTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCT                                                                           >  SRR4302540.5035039/1‑94 (MQ=60)
                    GTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCT                                                                           <  SRR4302540.2150998/94‑1 (MQ=60)
                     TATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTG                                                                          >  SRR4302540.2472593/1‑94 (MQ=60)
                      ATCGCCACCGCCAGTTTCATGGCCTACGCGTTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCATAGTTGCCGCTGGTGGCTGG                                                                         >  SRR4302540.9050974/1‑94 (MQ=60)
                       TCTCCGCCGCCAGTTTGATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGC                                                                        <  SRR4302540.3248632/94‑1 (MQ=60)
                       TCGCCCCCGCCAATTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGC                                                                        <  SRR4302540.634515/94‑1 (MQ=60)
                        CGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCA                                                                       >  SRR4302540.3811384/1‑94 (MQ=60)
                          CCCCCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACC                                                                     <  SRR4302540.3603634/94‑1 (MQ=60)
                          CCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACC                                                                     <  SRR4302540.4205992/94‑1 (MQ=60)
                          CCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGANTCGCCGCTGGTGGCTGGCNCC                                                                     >  SRR4302540.157433/1‑94 (MQ=60)
                          CCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACC                                                                     >  SRR4302540.4153895/1‑94 (MQ=60)
                          CCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTAGCTGGCACC                                                                     >  SRR4302540.2856542/1‑94 (MQ=60)
                           CACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCG                                                                    >  SRR4302540.6135485/1‑94 (MQ=60)
                            CCCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGA                                                                   <  SRR4302540.7073770/94‑1 (MQ=60)
                            ACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCGGGGACCGA                                                                   >  SRR4302540.9161247/1‑94 (MQ=60)
                             CCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGAC                                                                  >  SRR4302540.454902/1‑94 (MQ=60)
                             CCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGAC                                                                  <  SRR4302540.7975122/94‑1 (MQ=60)
                              CGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACA                                                                 <  SRR4302540.5377307/94‑1 (MQ=60)
                              CGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACA                                                                 <  SRR4302540.3615562/94‑1 (MQ=60)
                               GCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAG                                                                >  SRR4302540.2137750/1‑94 (MQ=60)
                                CCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGC                                                               <  SRR4302540.93728/94‑1 (MQ=60)
                                CCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGC                                                               >  SRR4302540.8692988/1‑94 (MQ=60)
                                 CAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCG                                                              >  SRR4302540.4968282/1‑94 (MQ=60)
                                 CAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCG                                                              >  SRR4302540.8586609/1‑94 (MQ=60)
                                 CAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCG                                                              <  SRR4302540.5688187/94‑1 (MQ=60)
                                  AGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGCCGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGT                                                             <  SRR4302540.4338170/94‑1 (MQ=60)
                                  AGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGT                                                             >  SRR4302540.2941117/1‑94 (MQ=60)
                                  AGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGT                                                             >  SRR4302540.132387/1‑94 (MQ=60)
                                  AGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGT                                                             >  SRR4302540.1088642/1‑94 (MQ=60)
                                   GTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTC                                                            >  SRR4302540.1471349/1‑94 (MQ=60)
                                   GTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTC                                                            >  SRR4302540.2463841/1‑94 (MQ=60)
                                   GTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTC                                                            >  SRR4302540.7971013/1‑94 (MQ=60)
                                     TTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCA                                                          >  SRR4302540.8131543/1‑94 (MQ=60)
                                     TTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCA                                                          >  SRR4302540.1958725/1‑94 (MQ=60)
                                     TTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCGGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCA                                                          <  SRR4302540.1746723/94‑1 (MQ=60)
                                      TCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCAC                                                         <  SRR4302540.548981/94‑1 (MQ=60)
                                        ATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACAC                                                       >  SRR4302540.7232780/1‑94 (MQ=60)
                                        ATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACAC                                                       >  SRR4302540.7468535/1‑94 (MQ=60)
                                         TGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCGACACT                                                      >  SRR4302540.206013/1‑94 (MQ=60)
                                          GGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCGCACTG                                                     >  SRR4302540.2312677/1‑94 (MQ=60)
                                          GGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTT                                                     >  SRR4302540.2312676/1‑94 (MQ=60)
                                           GCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGT                                                    <  SRR4302540.7394636/94‑1 (MQ=60)
                                           GCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGT                                                    <  SRR4302540.9210281/94‑1 (MQ=60)
                                            CCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTT                                                   >  SRR4302540.1898108/1‑94 (MQ=60)
                                            CCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTT                                                   >  SRR4302540.3759680/1‑94 (MQ=60)
                                             CTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTC                                                  >  SRR4302540.3242018/1‑94 (MQ=60)
                                             CTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGGCCACACTGTTC                                                  >  SRR4302540.7725850/1‑94 (MQ=60)
                                             CTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCACCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTC                                                  >  SRR4302540.4378240/1‑94 (MQ=60)
                                             CTACGCGCTGGGGAAAATCCTCGACGTGAACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTC                                                  <  SRR4302540.9032586/94‑1 (MQ=60)
                                              TACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCG                                                 >  SRR4302540.9487898/1‑94 (MQ=60)
                                              CACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCG                                                 <  SRR4302540.2271144/94‑1 (MQ=60)
                                               ACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGG                                                >  SRR4302540.6290188/1‑94 (MQ=60)
                                                CGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGT                                               >  SRR4302540.6251003/1‑94 (MQ=60)
                                                CGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGG                                               >  SRR4302540.3571324/1‑94 (MQ=60)
                                                   GCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAAC                                            <  SRR4302540.5982824/94‑1 (MQ=60)
                                                   GCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAAC                                            <  SRR4302540.7152964/94‑1 (MQ=60)
                                                   GCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAAC                                            <  SRR4302540.9923330/94‑1 (MQ=60)
                                                    CTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACCGCGTCCACACTGTTCGGTAACG                                           >  SRR4302540.2565516/1‑94 (MQ=60)
                                                     TGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACGGACAGCGTCCACACTGTTCGGTAACGT                                          >  SRR4302540.1199870/1‑94 (MQ=60)
                                                     TGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGCAACGT                                          >  SRR4302540.858273/1‑94 (MQ=60)
                                                      GGGGCAAATCCTCAACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTC                                         >  SRR4302540.3192150/1‑94 (MQ=60)
                                                       GGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCA                                        <  SRR4302540.3718964/94‑1 (MQ=60)
                                                        GGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGGTCGGGAAGGTCAG                                       >  SRR4302540.4810472/1‑94 (MQ=60)
                                                         GCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGC                                      <  SRR4302540.6078407/94‑1 (MQ=60)
                                                         GCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGC                                      >  SRR4302540.5854166/1‑94 (MQ=60)
                                                         GCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGC                                      <  SRR4302540.9489152/94‑1 (MQ=60)
                                                         GCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGC                                      <  SRR4302540.6338622/94‑1 (MQ=60)
                                                         GCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGC                                      >  SRR4302540.6690033/1‑94 (MQ=60)
                                                         GCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGC                                      <  SRR4302540.5687359/94‑1 (MQ=60)
                                                          GAAATCCTCGACGTGCACCTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCG                                     <  SRR4302540.2782230/94‑1 (MQ=60)
                                                          CAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCG                                     >  SRR4302540.3867398/1‑94 (MQ=60)
                                                           AAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGA                                    >  SRR4302540.7536928/1‑94 (MQ=60)
                                                            AATCCTCGGCGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGAC                                   >  SRR4302540.5216619/1‑94 (MQ=60)
                                                            AATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGAC                                   >  SRR4302540.8492777/1‑94 (MQ=60)
                                                            AATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGCAACGTCAGCGAC                                   >  SRR4302540.2811464/1‑94 (MQ=60)
                                                             ATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACA                                  <  SRR4302540.3990089/94‑1 (MQ=60)
                                                              ACCTCGACGTGCACGTTTTTAGCCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACAC                                 <  SRR4302540.5772834/94‑1 (MQ=60)
                                                                CTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGC                               <  SRR4302540.7747099/94‑1 (MQ=60)
                                                                CTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGC                               >  SRR4302540.9714789/1‑94 (MQ=60)
                                                                CTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGC                               <  SRR4302540.7747100/94‑1 (MQ=60)
                                                                 TCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCT                              <  SRR4302540.6574110/94‑1 (MQ=60)
                                                                 TCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCT                              >  SRR4302540.173095/1‑94 (MQ=60)
                                                                 TCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCT                              <  SRR4302540.8744197/94‑1 (MQ=60)
                                                                 TCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCT                              <  SRR4302540.4522314/94‑1 (MQ=60)
                                                                 TCGACGTGCACGTGTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCAGCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCT                              <  SRR4302540.6516165/94‑1 (MQ=60)
                                                                  CGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCCCACTGTTCGGTAACGTCAGCGACCCGCTG                             >  SRR4302540.4864687/1‑94 (MQ=60)
                                                                  CGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTG                             <  SRR4302540.10107074/94‑1 (MQ=60)
                                                                   GACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGG                            <  SRR4302540.7324612/94‑1 (MQ=60)
                                                                   GACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGG                            >  SRR4302540.4063500/1‑94 (MQ=60)
                                                                    ACGTGCACTTTTTTAACCGCCTGCGCGAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGC                           <  SRR4302540.4536292/94‑1 (MQ=60)
                                                                     CGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCC                          >  SRR4302540.1747694/1‑94 (MQ=60)
                                                                      GTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCT                         <  SRR4302540.1214441/94‑1 (MQ=60)
                                                                      GTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACcgggcccacccctttcgttacagccaccgacactccggact                         >  SRR4302540.9945434/1‑53 (MQ=60)
                                                                      GTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCT                         >  SRR4302540.3101592/1‑94 (MQ=60)
                                                                      GTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCT                         >  SRR4302540.4116244/1‑94 (MQ=60)
                                                                       TGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTT                        >  SRR4302540.3893645/1‑94 (MQ=60)
                                                                         CCCGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTT                      <  SRR4302540.9603925/94‑1 (MQ=60)
                                                                         CACGTTTTTAGCCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTT                      <  SRR4302540.514012/94‑1 (MQ=60)
                                                                         CACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTT                      >  SRR4302540.6118055/1‑94 (MQ=60)
                                                                         CACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTT                      >  SRR4302540.1500359/1‑94 (MQ=60)
                                                                         CACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTT                      >  SRR4302540.6118056/1‑94 (MQ=60)
                                                                         CACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTT                      <  SRR4302540.8703565/94‑1 (MQ=60)
                                                                         CACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTT                      <  SRR4302540.5565114/94‑1 (MQ=60)
                                                                          ACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTT                     <  SRR4302540.7676248/94‑1 (MQ=60)
                                                                           CGTTTTTACCCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTC                    <  SRR4302540.5713539/94‑1 (MQ=60)
                                                                           CGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTC                    <  SRR4302540.7256547/94‑1 (MQ=60)
                                                                           CGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTC                    >  SRR4302540.8695430/1‑94 (MQ=60)
                                                                            GTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCT                   >  SRR4302540.8435902/1‑94 (MQ=60)
                                                                            GTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCT                   >  SRR4302540.8139123/1‑94 (MQ=60)
                                                                            GTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCT                   >  SRR4302540.9748099/1‑94 (MQ=60)
                                                                            GTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCT                   <  SRR4302540.5376444/94‑1 (MQ=60)
                                                                            GTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCT                   >  SRR4302540.8110010/1‑94 (MQ=60)
                                                                            GTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCT                   >  SRR4302540.5613112/1‑94 (MQ=60)
                                                                            GTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGGGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCT                   >  SRR4302540.6977585/1‑94 (MQ=60)
                                                                             TTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTTTT                  >  SRR4302540.2184630/1‑94 (MQ=60)
                                                                              TTTTAGCCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTC                 <  SRR4302540.1293206/94‑1 (MQ=60)
                                                                              TTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTC                 <  SRR4302540.2087854/94‑1 (MQ=60)
                                                                              TTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTC                 <  SRR4302540.5861801/94‑1 (MQ=60)
                                                                              TTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTC                 <  SRR4302540.1293207/94‑1 (MQ=60)
                                                                               TTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCA                >  SRR4302540.591793/1‑94 (MQ=60)
                                                                               TTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCA                <  SRR4302540.2657129/94‑1 (MQ=60)
                                                                               TTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCA                >  SRR4302540.380139/1‑94 (MQ=60)
                                                                                TTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCAT               >  SRR4302540.8151060/1‑94 (MQ=60)
                                                                                 TACCCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATT              <  SRR4302540.2558036/94‑1 (MQ=60)
                                                                                 TAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATT              >  SRR4302540.5164042/1‑94 (MQ=60)
                                                                                   ACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGC            >  SRR4302540.7185412/1‑94 (MQ=60)
                                                                                   ACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGC            <  SRR4302540.3041055/94‑1 (MQ=60)
                                                                                    CCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCC           >  SRR4302540.1299614/1‑94 (MQ=60)
                                                                                    CCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCC           >  SRR4302540.10047225/1‑94 (MQ=60)
                                                                                    CCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCC           >  SRR4302540.10047224/1‑94 (MQ=60)
                                                                                    CCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCC           >  SRR4302540.8611287/1‑94 (MQ=60)
                                                                                     CGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCT          <  SRR4302540.2012974/94‑1 (MQ=60)
                                                                                      GCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTT         >  SRR4302540.7197608/1‑94 (MQ=60)
                                                                                      GCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTT         >  SRR4302540.8828226/1‑94 (MQ=60)
                                                                                      GCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTT         >  SRR4302540.5195293/1‑94 (MQ=60)
                                                                                      GCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTT         >  SRR4302540.1036168/1‑94 (MQ=60)
                                                                                      GCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTT         >  SRR4302540.2580819/1‑94 (MQ=60)
                                                                                      GCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTT         >  SRR4302540.1418712/1‑94 (MQ=60)
                                                                                       CCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCGTCATTGCCTTC        >  SRR4302540.6092790/1‑94 (MQ=60)
                                                                                       CCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTC        >  SRR4302540.6448537/1‑94 (MQ=60)
                                                                                        CTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCT       >  SRR4302540.8938191/1‑94 (MQ=60)
                                                                                        CTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCT       >  SRR4302540.9174237/1‑94 (MQ=60)
                                                                                         TGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTG      <  SRR4302540.7517277/94‑1 (MQ=60)
                                                                                         TGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTG      <  SRR4302540.1623802/94‑1 (MQ=60)
                                                                                         TGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTG      <  SRR4302540.1623803/94‑1 (MQ=60)
                                                                                         TGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTG      <  SRR4302540.3406611/94‑1 (MQ=60)
                                                                                          GCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTGG     <  SRR4302540.565712/94‑1 (MQ=60)
                                                                                          GCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTGG     <  SRR4302540.4017619/94‑1 (MQ=60)
                                                                                           CGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTGGC    <  SRR4302540.1080485/94‑1 (MQ=60)
                                                                                            GCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTGGCG   >  SRR4302540.9645727/1‑94 (MQ=60)
                                                                                             CCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTGGCGT  >  SRR4302540.8915114/1‑94 (MQ=60)
                                                                                             |                                                                                             
CTTCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTGGCGT  >  NC_000913/3607156‑3607342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑