Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,607,249	T→C	R134R (CGT→CGC)	yhhQ →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,607,249	0	T	C	100.0%	849.6 / NA	262	R134R (CGT→CGC)	yhhQ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (144/118); total (144/118)

Only 100 of 273 total aligned reads displayed.

CAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTG  >  NC_000913/3607159‑3607338

cAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCa                                                                                         >  1:1197199/1‑93 (MQ=255)

cAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCa                                                                                         <  1:719917/93‑1 (MQ=255)

 aaCCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCag                                                                                        >  2:4718305/1‑93 (MQ=255)

  aCCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCaga                                                                                       <  2:4745606/93‑1 (MQ=255)

   ccTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCagag                                                                                      <  2:3925500/93‑1 (MQ=255)

    cTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGt                                                                                     >  2:2930349/1‑93 (MQ=255)

    cTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGt                                                                                     >  1:5425590/1‑93 (MQ=255)

       tttGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTcgc                                                                                  <  1:3151654/93‑1 (MQ=255)

       tttGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTcgc                                                                                  <  1:5267747/93‑1 (MQ=255)

       tttGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTcgc                                                                                  <  1:256807/93‑1 (MQ=255)

        ttGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTcgcc                                                                                 <  2:267787/93‑1 (MQ=255)

             ccccGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCtgg                                                                            <  2:5367287/92‑1 (MQ=255)

              cccGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCtggt                                                                           >  1:4417620/1‑93 (MQ=255)

               ccGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCtggtg                                                                          >  1:1651010/1‑93 (MQ=255)

                cGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCtggtgg                                                                         <  1:4654973/93‑1 (MQ=255)

                 ctATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGtggc                                                                        <  1:6288405/92‑1 (MQ=255)

                  tATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGtggct                                                                       >  2:378285/1‑93 (MQ=255)

                  tATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGtggct                                                                       >  1:1405426/1‑93 (MQ=255)

                  tATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGtggct                                                                       <  1:1715588/93‑1 (MQ=255)

                  tATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGtggct                                                                       >  1:3439083/1‑93 (MQ=255)

                    tCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATGCTCGACGTGCACGTTTTTAACCGCCTGCTCCAGAGTCGCCGCTGGtggctgg                                                                     <  2:4176353/93‑1 (MQ=255)

                    tCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGtggctgg                                                                     <  2:2444222/93‑1 (MQ=255)

                    tCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGtggctgg                                                                     >  1:1279243/1‑93 (MQ=255)

                      gCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCa                                                                   >  2:5258123/1‑93 (MQ=255)

                       ccACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCAc                                                                  >  1:4228336/1‑93 (MQ=255)

                       ccACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCAc                                                                  >  2:1221230/1‑93 (MQ=255)

                        cACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCAcc                                                                 >  1:1787989/1‑93 (MQ=255)

                          ccGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGa                                                               <  1:6157185/93‑1 (MQ=255)

                           cGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGAc                                                              <  2:172170/93‑1 (MQ=255)

                            gCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACa                                                             >  1:2886553/1‑93 (MQ=255)

                            gCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACa                                                             <  1:5405199/93‑1 (MQ=255)

                              cAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGc                                                           <  2:6206191/93‑1 (MQ=255)

                              cAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGc                                                           >  2:5557834/1‑93 (MQ=255)

                              cAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGc                                                           >  1:1361862/1‑93 (MQ=255)

                              cAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGc                                                           >  2:1037835/1‑93 (MQ=255)

                               aGTTTCAGGGCCTACGCGCGGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCg                                                          <  2:3577700/93‑1 (MQ=255)

                                gTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGt                                                         <  1:1930919/93‑1 (MQ=255)

                                gTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGt                                                         >  1:4822799/1‑93 (MQ=255)

                                 gttCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTc                                                        >  2:5821006/2‑93 (MQ=255)

                                    cATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCcac                                                     <  1:822585/93‑1 (MQ=255)

                                      tGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCacac                                                   >  1:3823555/1‑93 (MQ=255)

                                       ggCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACt                                                  >  2:4298764/1‑93 (MQ=255)

                                       ggCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACt                                                  <  1:2389768/93‑1 (MQ=255)

                                       ggCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACt                                                  >  2:1611186/1‑93 (MQ=255)

                                         ccTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGt                                                <  1:5572299/93‑1 (MQ=255)

                                         ccTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGt                                                <  2:2290744/93‑1 (MQ=255)

                                          cTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGtt                                               <  1:6004308/93‑1 (MQ=255)

                                           tACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACCCTGTTc                                              >  2:2538189/1‑93 (MQ=255)

                                           tACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTc                                              >  2:5501283/1‑93 (MQ=255)

                                           tACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTc                                              >  2:720189/1‑93 (MQ=255)

                                           tACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTc                                              >  2:2228403/1‑93 (MQ=255)

                                           tACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTc                                              <  2:2105472/93‑1 (MQ=255)

                                            aCGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCg                                             <  1:2710682/93‑1 (MQ=255)

                                              gcgcTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGt                                           >  2:614171/1‑93 (MQ=255)

                                                gcTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTaa                                         <  2:298706/93‑1 (MQ=255)

                                                gcTGGGGCAAATCAGCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTaa                                         <  1:2970902/93‑1 (MQ=255)

                                                 cTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAAc                                        <  2:1310758/93‑1 (MQ=255)

                                                  tGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACg                                       >  2:662655/1‑93 (MQ=255)

                                                  tGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACg                                       <  2:318456/93‑1 (MQ=255)

                                                  tGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACg                                       <  1:211244/93‑1 (MQ=255)

                                                  tGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACg                                       >  1:4906276/1‑93 (MQ=255)

                                                   ggggCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGt                                      >  1:5519081/1‑93 (MQ=255)

                                                    gggCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTc                                     <  1:6120167/93‑1 (MQ=255)

                                                       cAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGc                                  <  1:1828912/93‑1 (MQ=255)

                                                       cAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGc                                  >  1:4879288/1‑93 (MQ=255)

                                                       cAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGc                                  <  1:4519952/93‑1 (MQ=255)

                                                        aaaTCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCg                                 >  1:175506/1‑93 (MQ=255)

                                                        aaaTCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCg                                 >  1:8750/1‑93 (MQ=255)

                                                          aTCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGac                               <  2:3286587/93‑1 (MQ=255)

                                                            ccTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGacac                             >  1:3217260/1‑93 (MQ=255)

                                                            ccTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTAGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGacac                             >  1:4578253/1‑93 (MQ=255)

                                                              tCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGc                           >  2:2812213/1‑93 (MQ=255)

                                                               cGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCt                          <  1:537739/93‑1 (MQ=255)

                                                                gACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTg                         >  2:5777269/1‑93 (MQ=255)

                                                                   gTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGcc                      <  1:2336097/93‑1 (MQ=255)

                                                                   gTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGGATCGTCAGCGACACGCTGGcc                      >  2:1372208/1‑93 (MQ=255)

                                                                     gCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCtt                    <  2:4877727/93‑1 (MQ=255)

                                                                     gCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCtt                    >  2:4641743/1‑93 (MQ=255)

                                                                       aCGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCtttt                  <  2:507312/93‑1 (MQ=255)

                                                                       aCGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCtttt                  <  2:5692647/93‑1 (MQ=255)

                                                                        cGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCttttt                 >  1:5169753/1‑93 (MQ=255)

                                                                         gTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTttc                <  2:6278237/93‑1 (MQ=255)

                                                                          tttttAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTttct               >  2:4421272/1‑93 (MQ=255)

                                                                           ttttAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTttctt              >  2:3683639/1‑93 (MQ=255)

                                                                           ttttAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTttctt              <  2:11474/93‑1 (MQ=255)

                                                                            tttAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACATCAGCGACACGCTGGCCTTTttcttc             >  2:2811082/1‑93 (MQ=255)

                                                                             ttAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCa            >  1:1097345/1‑93 (MQ=255)

                                                                             ttAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCa            <  2:861979/93‑1 (MQ=255)

                                                                             ttAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCa            <  1:4470682/93‑1 (MQ=255)

                                                                              tAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCAt           >  2:1880282/1‑93 (MQ=255)

                                                                              tAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCAt           >  1:1912324/1‑93 (MQ=255)

                                                                              tAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCAt           <  1:1597321/93‑1 (MQ=255)

                                                                               aaCCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCAtt          >  2:3870856/1‑93 (MQ=255)

                                                                               aaCCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCAtt          <  2:2401386/93‑1 (MQ=255)

                                                                               aaCCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCAtt          <  1:5864821/93‑1 (MQ=255)

                                                                                aCCGCCTGCGCAAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTg         <  2:513188/93‑1 (MQ=255)

                                                                                  cGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGcc       >  1:3933424/1‑93 (MQ=255)

                                                                                      tGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCt   <  2:3456386/93‑1 (MQ=255)

                                                                                      tGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCt   <  1:886639/93‑1 (MQ=255)

                                                                                      tGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCt   >  1:285414/1‑93 (MQ=255)

CAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTG  >  NC_000913/3607159‑3607338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTGGCG  >  NC_000913/3607157‑3607341

TTCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCC                                                                                             >  SRR4302533.2370421/1‑94 (MQ=60)

 TCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCA                                                                                            >  SRR4302533.1204390/1‑94 (MQ=60)

  CAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAG                                                                                           <  SRR4302533.724162/94‑1 (MQ=60)

   AACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGA                                                                                          >  SRR4302533.2107065/1‑94 (MQ=60)

    ACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAG                                                                                         <  SRR4302533.1322887/94‑1 (MQ=60)

     CCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGT                                                                                        >  SRR4302533.1849935/1‑94 (MQ=60)

     CCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGT                                                                                        >  SRR4302533.5458266/1‑94 (MQ=60)

       TGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCG                                                                                      >  SRR4302533.4650182/1‑94 (MQ=60)

       TGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTCTAACCGCCTGCGCCAGAGTCG                                                                                      >  SRR4302533.3141980/1‑94 (MQ=60)

         TTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCC                                                                                    <  SRR4302533.258373/94‑1 (MQ=60)

         TTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCC                                                                                    <  SRR4302533.5299350/94‑1 (MQ=60)

         TTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCC                                                                                    <  SRR4302533.3171029/94‑1 (MQ=60)

          ttggcgccccgagctccaccgccaggttcatggccttgccggcgggggaaaacccgGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCG                                                                                   <  SRR4302533.1218383/38‑1 (MQ=60)

          TTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCG                                                                                   >  SRR4302533.674670/1‑94 (MQ=60)

           TGTCGCCCTTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAACCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGC                                                                                  <  SRR4302533.4462048/94‑1 (MQ=60)

             TCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTG                                                                                >  SRR4302533.2325854/1‑94 (MQ=60)

               GCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCGGCGGGT                                                                              >  SRR4302533.1792307/1‑94 (MQ=60)

               GCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGT                                                                              >  SRR4302533.4444330/1‑94 (MQ=60)

               GCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGT                                                                              >  SRR4302533.5405483/1‑94 (MQ=60)

               GCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGT                                                                              >  SRR4302533.5466479/1‑94 (MQ=60)

               GCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGT                                                                              >  SRR4302533.1792306/1‑94 (MQ=60)

                CCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTG                                                                             >  SRR4302533.1661011/1‑94 (MQ=60)

                CCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTG                                                                             <  SRR4302533.835845/94‑1 (MQ=60)

                CCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCAGGAGTCGCGGCTGGTG                                                                             >  SRR4302533.4541261/1‑94 (MQ=60)

                  CGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGC                                                                           <  SRR4302533.4683183/94‑1 (MQ=60)

                  CGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGC                                                                           <  SRR4302533.551500/94‑1 (MQ=60)

                  CGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGC                                                                           <  SRR4302533.948011/94‑1 (MQ=60)

                   GTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCT                                                                          >  SRR4302533.3460322/1‑94 (MQ=60)

                   GTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCT                                                                          >  SRR4302533.1413929/1‑94 (MQ=60)

                   CTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCT                                                                          <  SRR4302533.6325917/94‑1 (MQ=60)

                    TATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGCCGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTG                                                                         <  SRR4302533.1725820/94‑1 (MQ=60)

                    TATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTG                                                                         <  SRR4302533.1725990/94‑1 (MQ=60)

                    TATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTG                                                                         >  SRR4302533.1749599/1‑94 (MQ=60)

                    TATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTG                                                                         <  SRR4302533.3227786/94‑1 (MQ=60)

                    TATCCCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTG                                                                         <  SRR4302533.2977766/94‑1 (MQ=60)

                     ATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGG                                                                        >  SRR4302533.1286932/1‑94 (MQ=60)

                      TCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGC                                                                       <  SRR4302533.6122000/94‑1 (MQ=60)

                        GCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCAC                                                                     >  SRR4302533.563759/1‑94 (MQ=60)

                        GCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCAC                                                                     >  SRR4302533.4253900/1‑94 (MQ=60)

                        GCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTAGCAC                                                                     >  SRR4302533.3007652/1‑94 (MQ=60)

                         CCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACC                                                                    >  SRR4302533.1798858/1‑94 (MQ=60)

                         CCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACC                                                                    >  SRR4302533.4931127/1‑94 (MQ=60)

                           ACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGA                                                                  >  SRR4302533.4503990/1‑94 (MQ=60)

                           ACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGA                                                                  >  SRR4302533.1400717/1‑94 (MQ=60)

                            CCGCCAGTTTCATGGCCTACGCGCTGGTGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGAC                                                                 <  SRR4302533.457360/94‑1 (MQ=60)

                            CCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGAC                                                                 <  SRR4302533.6194225/94‑1 (MQ=60)

                            CCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGAC                                                                 >  SRR4302533.1887659/1‑94 (MQ=60)

                            CCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGAC                                                                 >  SRR4302533.2748599/1‑94 (MQ=60)

                             CGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACA                                                                >  SRR4302533.2904303/1‑94 (MQ=60)

                             CGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACA                                                                <  SRR4302533.3452617/94‑1 (MQ=60)

                              GCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAG                                                               <  SRR4302533.5437681/94‑1 (MQ=60)

                              GCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCAACGACAG                                                               >  SRR4302533.6207530/1‑94 (MQ=60)

                               CCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGC                                                              <  SRR4302533.3896734/94‑1 (MQ=60)

                               CCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGC                                                              >  SRR4302533.4139834/1‑94 (MQ=60)

                               CCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGC                                                              >  SRR4302533.1370040/1‑94 (MQ=60)

                               CCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGC                                                              >  SRR4302533.1825301/1‑94 (MQ=60)

                                 AGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGT                                                            >  SRR4302533.3589319/1‑94 (MQ=60)

                                 AGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGT                                                            >  SRR4302533.4852019/1‑94 (MQ=60)

                                  GTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTC                                                           <  SRR4302533.1942697/94‑1 (MQ=60)

                                   TTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCC                                                          <  SRR4302533.4453378/94‑1 (MQ=60)

                                   TTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCC                                                          >  SRR4302533.2891286/1‑94 (MQ=60)

                                     TCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCAC                                                        >  SRR4302533.1601809/1‑94 (MQ=60)

                                     TCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCAC                                                        >  SRR4302533.2390706/1‑94 (MQ=60)

                                      CATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACA                                                       <  SRR4302533.827412/94‑1 (MQ=60)

                                       ATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGGGTCCACAC                                                      >  SRR4302533.5452588/1‑94 (MQ=60)

                                       ATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACAC                                                      <  SRR4302533.88342/94‑1 (MQ=60)

                                       ATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACAC                                                      >  SRR4302533.4290404/1‑94 (MQ=60)

                                       ATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACAC                                                      >  SRR4302533.3846932/1‑94 (MQ=60)

                                         GGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTG                                                    >  SRR4302533.253848/1‑94 (MQ=60)

                                         GGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTG                                                    <  SRR4302533.2404527/94‑1 (MQ=60)

                                           CCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTT                                                  >  SRR4302533.3196603/1‑94 (MQ=60)

                                           CCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTT                                                  <  SRR4302533.5605975/94‑1 (MQ=60)

                                            CTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTC                                                 <  SRR4302533.6040687/94‑1 (MQ=60)

                                              ACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGG                                               <  SRR4302533.2727321/94‑1 (MQ=60)

                                               CGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGT                                              >  SRR4302533.3868535/1‑94 (MQ=60)

                                                 CGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAA                                            <  SRR4302533.2838508/94‑1 (MQ=60)

                                                  GCTGGGGCAAATCAGCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAAC                                           <  SRR4302533.2989070/94‑1 (MQ=60)

                                                   CTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACG                                          >  SRR4302533.1273897/1‑94 (MQ=60)

                                                   CTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACG                                          >  SRR4302533.4936003/1‑94 (MQ=60)

                                                    TGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGT                                         >  SRR4302533.5552405/1‑94 (MQ=60)

                                                    TGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGT                                         <  SRR4302533.212576/94‑1 (MQ=60)

                                                      GGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCA                                       <  SRR4302533.6157073/94‑1 (MQ=60)

                                                      GGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCA                                       >  SRR4302533.488262/1‑94 (MQ=60)

                                                      GGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCA                                       <  SRR4302533.1638061/94‑1 (MQ=60)

                                                       GGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAG                                      >  SRR4302533.5607165/1‑94 (MQ=60)

                                                        GCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGC                                     <  SRR4302533.6081710/94‑1 (MQ=60)

                                                        GCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGC                                     >  SRR4302533.4908848/1‑94 (MQ=60)

                                                        GCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGC                                     <  SRR4302533.4641756/94‑1 (MQ=60)

                                                         CAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCG                                    <  SRR4302533.5587457/94‑1 (MQ=60)

                                                         CAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCG                                    <  SRR4302533.1840079/94‑1 (MQ=60)

                                                         CAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCG                                    >  SRR4302533.176611/1‑94 (MQ=60)

                                                         CAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCG                                    <  SRR4302533.4547324/94‑1 (MQ=60)

                                                         CAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCG                                    >  SRR4302533.8828/1‑94 (MQ=60)

                                                           AATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGAC                                  <  SRR4302533.1820297/94‑1 (MQ=60)

                                                           AATCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGAC                                  >  SRR4302533.3531558/1‑94 (MQ=60)

                                                             TCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACAC                                <  SRR4302533.4700663/94‑1 (MQ=60)

                                                             TCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACAC                                >  SRR4302533.3237099/1‑94 (MQ=60)

                                                             TCCTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTAGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACAC                                >  SRR4302533.4605999/1‑94 (MQ=60)

                                                               CTCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGC                              >  SRR4302533.6223415/1‑94 (MQ=60)

                                                                CCGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCT                             <  SRR4302533.5271257/94‑1 (MQ=60)

                                                                 CGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTG                            >  SRR4302533.5335678/1‑94 (MQ=60)

                                                                 CGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTG                            <  SRR4302533.540939/94‑1 (MQ=60)

                                                                 CGACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTG                            >  SRR4302533.4901691/1‑94 (MQ=60)

                                                                  GACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGG                           >  SRR4302533.5201085/1‑94 (MQ=60)

                                                                  GACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGG                           >  SRR4302533.5960962/1‑94 (MQ=60)

                                                                  GACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGC                           >  SRR4302533.2069427/1‑94 (MQ=60)

                                                                   ACGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGC                          >  SRR4302533.5450807/1‑94 (MQ=60)

                                                                    CGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCC                         >  SRR4302533.2663133/1‑94 (MQ=60)

                                                                    CGTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCC                         <  SRR4302533.59714/94‑1 (MQ=60)

                                                                     GTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCT                        >  SRR4302533.2568133/1‑94 (MQ=60)

                                                                     GTGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCT                        <  SRR4302533.2350557/94‑1 (MQ=60)

                                                                      TGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTT                       <  SRR4302533.1937974/94‑1 (MQ=60)

                                                                      TGCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTT                       <  SRR4302533.6164727/94‑1 (MQ=60)

                                                                       GCACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTT                      >  SRR4302533.889567/1‑94 (MQ=60)

                                                                        CACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTT                     <  SRR4302533.674099/94‑1 (MQ=60)

                                                                        CACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTT                     >  SRR4302533.947142/1‑94 (MQ=60)

                                                                         ACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTT                    >  SRR4302533.5200956/1‑94 (MQ=60)

                                                                         ACGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTT                    >  SRR4302533.517361/1‑94 (MQ=60)

                                                                          CGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGGCTTTTTT                   >  SRR4302533.5038049/1‑94 (MQ=60)

                                                                          CGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTC                   <  SRR4302533.1332219/94‑1 (MQ=60)

                                                                          CGTTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTC                   >  SRR4302533.4822893/1‑94 (MQ=60)

                                                                            TTTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTT                 >  SRR4302533.729825/1‑94 (MQ=60)

                                                                             TTTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTC                <  SRR4302533.1205835/94‑1 (MQ=60)

                                                                              TTTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCA               >  SRR4302533.1103844/1‑94 (MQ=60)

                                                                               TTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCAT              <  SRR4302533.4497719/94‑1 (MQ=60)

                                                                               TTAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCAT              >  SRR4302533.1923989/1‑94 (MQ=60)

                                                                                TAACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATT             <  SRR4302533.1606994/94‑1 (MQ=60)

                                                                                 AACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTG            <  SRR4302533.5900277/94‑1 (MQ=60)

                                                                                  ACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGC           <  SRR4302533.1628674/94‑1 (MQ=60)

                                                                                  ACCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGC           <  SRR4302533.4292217/94‑1 (MQ=60)

                                                                                   CCGCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCC          >  SRR4302533.3957434/1‑94 (MQ=60)

                                                                                     GCCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTT        <  SRR4302533.796180/94‑1 (MQ=60)

                                                                                      CCTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTC       >  SRR4302533.1664020/1‑94 (MQ=60)

                                                                                       CTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCT      >  SRR4302533.5427567/1‑94 (MQ=60)

                                                                                       CTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCT      >  SRR4302533.287157/1‑94 (MQ=60)

                                                                                       CTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCT      <  SRR4302533.2679972/94‑1 (MQ=60)

                                                                                       CTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCT      >  SRR4302533.1443903/1‑94 (MQ=60)

                                                                                       CTGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCT      >  SRR4302533.1120197/1‑94 (MQ=60)

                                                                                        TGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTG     <  SRR4302533.2951125/94‑1 (MQ=60)

                                                                                        TGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTG     <  SRR4302533.2166323/94‑1 (MQ=60)

                                                                                        TGCGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTG     <  SRR4302533.891845/94‑1 (MQ=60)

                                                                                          CGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTGGC   <  SRR4302533.3533736/94‑1 (MQ=60)

                                                                                          CGCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTGGC   >  SRR4302533.1572910/1‑94 (MQ=60)

                                                                                           GCCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTGGCG  <  SRR4302533.670257/94‑1 (MQ=60)

TTCAACCTGTTTGTCGCCCGTATCGCCACCGCCAGTTTCATGGCCTACGCGCTGGGGCAAATCCTCGACGTGCACGTTTTTAACCGCCTGCGTCAGAGTCGCCGCTGGTGGCTGGCACCGACAGCGTCCACACTGTTCGGTAACGTCAGCGACACGCTGGCCTTTTTCTTCATTGCCTTCTGGCG  >  NC_000913/3607157‑3607341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`