Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,624,135 |
A→G |
N100N (AAT→AAC) |
b3485 ← |
putative transporter |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,624,135 | 0 | A | G | 99.6%
| 876.7
/ NA
| 267 | N100N (AAT→AAC) | b3485 | putative transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (138/128); minor base C (0/1); total (138/129) |
| Fisher's exact test for biased strand distribution p-value = 4.83e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 273 total aligned reads displayed.
AAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATATTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATA > NC_000913/3624045‑3624224
|
aaTGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGttt < 2:3281472/93‑1 (MQ=255)
aaTGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGttt > 1:5639637/1‑93 (MQ=255)
aaTGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGttt < 2:3507574/93‑1 (MQ=255)
aaTGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGttt > 2:6040059/1‑93 (MQ=255)
aTGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTa > 1:4457727/1‑93 (MQ=255)
tGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTAt < 1:375530/93‑1 (MQ=255)
tGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTAt < 2:3713489/93‑1 (MQ=255)
tGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTAt < 1:1795906/93‑1 (MQ=255)
gCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATc < 1:502931/93‑1 (MQ=255)
ccTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATcg < 2:2972570/93‑1 (MQ=255)
ccTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATcg > 1:4162862/1‑93 (MQ=255)
cTGGCTGATGCGCATGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATcgc < 2:3690132/93‑1 (MQ=255)
cTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATcgc < 2:932821/93‑1 (MQ=255)
cTGGCTCATGCGCGTGGCATCGACGTGCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATcgc < 2:613011/93‑1 (MQ=255)
gCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGaa < 2:2055566/93‑1 (MQ=255)
tCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAgg < 1:2751225/93‑1 (MQ=255)
cATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGt < 2:4944585/93‑1 (MQ=255)
cATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGt < 1:3293014/93‑1 (MQ=255)
cATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGt < 1:3223255/93‑1 (MQ=255)
aTGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGta < 2:1124554/93‑1 (MQ=255)
tGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGtat < 2:1533459/93‑1 (MQ=255)
tGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGtat > 1:4768584/1‑93 (MQ=255)
tGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGtat > 1:2180010/1‑93 (MQ=255)
tGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGtat > 1:2358299/1‑93 (MQ=255)
tGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGtat > 1:36380/1‑93 (MQ=255)
gcgcGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGtata < 2:3228459/93‑1 (MQ=255)
gcgcGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGtata < 1:46235/93‑1 (MQ=255)
gcgcGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGtata < 1:2475280/93‑1 (MQ=255)
cgcgTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAg < 1:5627316/93‑1 (MQ=255)
gcgTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGc < 1:5572073/93‑1 (MQ=255)
gcgTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGc < 1:5089637/93‑1 (MQ=255)
gTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGt > 1:1918114/1‑93 (MQ=255)
gTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGt < 1:4375177/93‑1 (MQ=255)
tGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTc > 1:976569/1‑93 (MQ=255)
cATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCgg > 1:5344914/1‑93 (MQ=255)
cATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCgg < 1:151469/93‑1 (MQ=255)
aTCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGc < 2:505834/93‑1 (MQ=255)
tCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCg > 1:3414753/1‑93 (MQ=255)
tCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCg > 1:1645841/1‑93 (MQ=255)
tCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCg > 1:2628792/1‑93 (MQ=255)
gACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTc > 2:2432494/1‑93 (MQ=255)
gTTCACCTGAATATCCGGCTGGCGTTCTGCGAGGACATCAAGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCCGCGTCCAg > 2:5434321/1‑93 (MQ=255)
ttCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGt > 1:4393436/1‑93 (MQ=255)
ttCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGt > 1:5782992/1‑93 (MQ=255)
tCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTc < 1:3007403/93‑1 (MQ=255)
tCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTc < 2:2311252/93‑1 (MQ=255)
aCCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCg > 2:4696234/1‑93 (MQ=255)
ccTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCgg > 1:1347772/1‑93 (MQ=255)
cTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTGCgga > 1:665780/1‑92 (MQ=255)
cTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGc > 2:3565177/1‑93 (MQ=255)
tGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGca > 1:2211494/1‑93 (MQ=255)
tGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGca < 1:777532/93‑1 (MQ=255)
gAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGcat < 1:281803/93‑1 (MQ=255)
gAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGcat < 2:4342050/93‑1 (MQ=255)
tatCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGcatcca < 2:3951723/93‑1 (MQ=255)
tatCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGcatcca > 2:2529523/1‑93 (MQ=255)
ccGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCAtct < 1:4922168/93‑1 (MQ=255)
cGGCTGGCGTCCGGCGAGGACATCACGCTGAAACTTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGGCCGGCCTTCAtctc > 2:203761/1‑93 (MQ=255)
gCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCAt > 2:2166636/1‑93 (MQ=255)
gCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCAt > 1:3489164/1‑93 (MQ=255)
gCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATACATCTCAt > 1:5522717/1‑93 (MQ=255)
cTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATc < 2:5295236/93‑1 (MQ=255)
ggCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATcgg > 2:3838340/1‑93 (MQ=255)
ggCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATcgg > 1:4294598/1‑93 (MQ=255)
gCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATcggc < 2:3352218/93‑1 (MQ=255)
cGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATcggcg < 1:4710833/93‑1 (MQ=255)
gTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATcggcgg > 2:1752713/1‑93 (MQ=255)
tCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGt > 2:4263828/1‑93 (MQ=255)
tCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGt < 2:5753708/93‑1 (MQ=255)
cGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGctca > 2:5269033/1‑93 (MQ=255)
cGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGatca > 1:3061035/1‑93 (MQ=255)
gAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGatcat > 2:798291/1‑93 (MQ=255)
aGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGatcatc < 1:1155155/93‑1 (MQ=255)
ggACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCAtct > 1:720447/1‑93 (MQ=255)
ggACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATAAtct > 1:1093411/1‑93 (MQ=255)
aTCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCgg > 2:3019012/1‑93 (MQ=255)
aTCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCgg > 2:2615480/1‑93 (MQ=255)
tCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGt < 1:4034689/93‑1 (MQ=255)
tCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGt < 1:5883137/93‑1 (MQ=255)
cTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCaa > 1:6175576/1‑93 (MQ=255)
tGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCaaa > 2:5832930/1‑93 (MQ=255)
gAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCaaaa < 1:4063780/93‑1 (MQ=255)
aaaaTTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCaaaaa < 1:5014687/93‑1 (MQ=255)
aTTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCa > 2:5471915/1‑93 (MQ=255)
aTTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCa > 1:2940551/1‑93 (MQ=255)
aTTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCa > 2:627652/1‑93 (MQ=255)
tAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACg > 1:6217638/1‑93 (MQ=255)
aGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGGGGCAAAAAACACgg > 1:6076125/1‑93 (MQ=255)
aGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCCGTGGCAAAAACCACgg > 2:5166869/1‑93 (MQ=255)
ggCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACggc > 1:2095993/1‑92 (MQ=255)
ggCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGa < 2:1354787/93‑1 (MQ=255)
gCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGAc < 2:2788015/93‑1 (MQ=255)
gCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGAc < 2:5698728/93‑1 (MQ=255)
ggAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGa > 1:2198494/1‑93 (MQ=255)
ggAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGa > 1:3980773/1‑93 (MQ=255)
ggAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGa < 1:1283732/93‑1 (MQ=255)
gAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGAt > 2:4460600/1‑93 (MQ=255)
gAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGAt < 1:831823/93‑1 (MQ=255)
gAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGAt > 1:1020778/1‑93 (MQ=255)
aaTGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATa < 1:2042657/93‑1 (MQ=255)
|
AAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATATTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATA > NC_000913/3624045‑3624224
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGTAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATATTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAAG > NC_000913/3624042‑3624228
|
GGTAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATG < SRR4302533.2483139/94‑1 (MQ=60)
GGTAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATG < SRR4302533.1890534/94‑1 (MQ=60)
TAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTT > SRR4302533.403724/1‑94 (MQ=60)
AAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTT > SRR4302533.5673728/1‑94 (MQ=60)
AAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTT > SRR4302533.1433124/1‑94 (MQ=60)
AATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTA > SRR4302533.2687658/1‑94 (MQ=60)
AATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTA > SRR4302533.4484683/1‑94 (MQ=60)
TGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATC < SRR4302533.377796/94‑1 (MQ=60)
TGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATC < SRR4302533.6205316/94‑1 (MQ=60)
TGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATC < SRR4302533.1806835/94‑1 (MQ=60)
GCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCG < SRR4302533.2349602/94‑1 (MQ=60)
GCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCG > SRR4302533.4188084/1‑94 (MQ=60)
GCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCG < SRR4302533.505920/94‑1 (MQ=60)
CTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCG < SRR4302533.1069343/94‑1 (MQ=60)
TGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGA > SRR4302533.570506/1‑94 (MQ=60)
GCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAG < SRR4302533.794909/94‑1 (MQ=60)
CTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGG > SRR4302533.3308241/1‑94 (MQ=60)
CTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGG < SRR4302533.6295705/94‑1 (MQ=60)
CTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGG > SRR4302533.4350251/1‑94 (MQ=60)
ctatgcccgttGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGT < SRR4302533.2018072/83‑1 (MQ=60)
TCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGT > SRR4302533.85119/1‑94 (MQ=60)
TCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGT < SRR4302533.2768094/94‑1 (MQ=60)
CATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTA < SRR4302533.3313340/94‑1 (MQ=60)
CATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTA < SRR4302533.3243131/94‑1 (MQ=60)
CATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTA < SRR4302533.3843767/94‑1 (MQ=60)
ATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTAT > SRR4302533.4797488/1‑94 (MQ=60)
ATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTAT > SRR4302533.36620/1‑94 (MQ=60)
ATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTAT > SRR4302533.2372874/1‑94 (MQ=60)
ATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTAT > SRR4302533.2193450/1‑94 (MQ=60)
TGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATA < SRR4302533.1502068/94‑1 (MQ=60)
TGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATA < SRR4302533.4545912/94‑1 (MQ=60)
TGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATA < SRR4302533.4418091/94‑1 (MQ=60)
TGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATA > SRR4302533.4071502/1‑94 (MQ=60)
GCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAG < SRR4302533.2490547/94‑1 (MQ=60)
GCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAG < SRR4302533.46555/94‑1 (MQ=60)
CGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGC < SRR4302533.5429745/94‑1 (MQ=60)
CGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGC < SRR4302533.2990794/94‑1 (MQ=60)
CGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGC < SRR4302533.5661339/94‑1 (MQ=60)
GCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCG < SRR4302533.5120388/94‑1 (MQ=60)
GCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCG < SRR4302533.689672/94‑1 (MQ=60)
GCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCG < SRR4302533.12835/94‑1 (MQ=60)
GCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCG < SRR4302533.5605749/94‑1 (MQ=60)
CGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGT < SRR4302533.3041192/94‑1 (MQ=60)
CGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGT > SRR4302533.1929823/1‑94 (MQ=60)
CGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGT > SRR4302533.4846338/1‑94 (MQ=60)
CGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGT > SRR4302533.1551951/1‑94 (MQ=60)
GTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTC < SRR4302533.4401584/94‑1 (MQ=60)
GTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTC > SRR4302533.982297/1‑94 (MQ=60)
TGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCC < SRR4302533.2600804/94‑1 (MQ=60)
GGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCC < SRR4302533.2829696/94‑1 (MQ=60)
GGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCG < SRR4302533.4093996/94‑1 (MQ=60)
GCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGG > SRR4302533.5376968/1‑94 (MQ=60)
GCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGG < SRR4302533.5327234/94‑1 (MQ=60)
GCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGG > SRR4302533.5586126/1‑94 (MQ=60)
CATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGC < SRR4302533.152438/94‑1 (MQ=60)
CATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGC > SRR4302533.2928910/1‑94 (MQ=60)
ATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCG > SRR4302533.2644946/1‑94 (MQ=60)
ATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCG > SRR4302533.1655805/1‑94 (MQ=60)
ATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCG > SRR4302533.3435850/1‑94 (MQ=60)
TCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGT < SRR4302533.2440142/94‑1 (MQ=60)
GACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCC > SRR4302533.2803381/1‑94 (MQ=60)
ACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCA > SRR4302533.1898799/1‑94 (MQ=60)
GTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGT > SRR4302533.4419960/1‑94 (MQ=60)
GTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGT > SRR4302533.5817920/1‑94 (MQ=60)
TCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCC < SRR4302533.4725781/94‑1 (MQ=60)
TCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCC < SRR4302533.3025800/94‑1 (MQ=60)
CACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCG > SRR4302533.3477394/1‑94 (MQ=60)
CACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCG > SRR4302533.5411713/1‑94 (MQ=60)
CACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCG > SRR4302533.2214877/1‑94 (MQ=60)
CACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCAGGCGTCCAGTCCG < SRR4302533.5029853/94‑1 (MQ=60)
ACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGG > SRR4302533.5253204/1‑94 (MQ=60)
ACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGG > SRR4302533.1355883/1‑94 (MQ=60)
CCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTgcgga > SRR4302533.669713/1‑89 (MQ=60)
CCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGC > SRR4302533.726721/1‑94 (MQ=60)
CTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCA > SRR4302533.2225131/1‑94 (MQ=60)
TGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCAT < SRR4302533.782104/94‑1 (MQ=60)
TGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCAT > SRR4302533.4817421/1‑94 (MQ=60)
GAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATC < SRR4302533.283527/94‑1 (MQ=60)
GAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATC < SRR4302533.4666728/94‑1 (MQ=60)
ATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATCTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCA < SRR4302533.3395456/94‑1 (MQ=60)
TATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCAT < SRR4302533.6151664/94‑1 (MQ=60)
ATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATC > SRR4302533.1211604/1‑94 (MQ=60)
TCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCT < SRR4302533.2217926/94‑1 (MQ=60)
CCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTC < SRR4302533.4951984/94‑1 (MQ=60)
CCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTC > SRR4302533.3347681/1‑94 (MQ=60)
CCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTC < SRR4302533.1693934/94‑1 (MQ=60)
GGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCAT > SRR4302533.3510683/1‑94 (MQ=60)
GGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCAT > SRR4302533.5772541/1‑94 (MQ=60)
GGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATACATCTCAT > SRR4302533.5556062/1‑94 (MQ=60)
CTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCG > SRR4302533.3707789/1‑94 (MQ=60)
TGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGG < SRR4302533.3069320/94‑1 (MQ=60)
TGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGG < SRR4302533.2074798/94‑1 (MQ=60)
TGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGG > SRR4302533.2099665/1‑94 (MQ=60)
TGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGG > SRR4302533.4320426/1‑94 (MQ=60)
TGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGG < SRR4302533.6014430/94‑1 (MQ=60)
GGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGC < SRR4302533.4033085/94‑1 (MQ=60)
GCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCG > SRR4302533.5011535/1‑94 (MQ=60)
CGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGG < SRR4302533.4739384/94‑1 (MQ=60)
GTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGT > SRR4302533.4440855/1‑94 (MQ=60)
GTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGG > SRR4302533.3501252/1‑94 (MQ=60)
CCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGA > SRR4302533.1335060/1‑94 (MQ=60)
CGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGAT > SRR4302533.5988567/1‑94 (MQ=60)
GCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCA > SRR4302533.3079821/1‑94 (MQ=60)
CGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCAT > SRR4302533.2619549/1‑94 (MQ=60)
CGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCAT > SRR4302533.4628000/1‑94 (MQ=60)
CGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCAT > SRR4302533.716857/1‑94 (MQ=60)
GAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATC > SRR4302533.1949744/1‑94 (MQ=60)
GAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATC > SRR4302533.3611702/1‑94 (MQ=60)
GAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATC > SRR4302533.4228640/1‑94 (MQ=60)
GAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATAGGCGGTGATCATT > SRR4302533.5068989/1‑94 (MQ=60)
AGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCT > SRR4302533.724696/1‑94 (MQ=60)
AGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCT < SRR4302533.1162084/94‑1 (MQ=60)
AGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATAATCT > SRR4302533.1099880/1‑94 (MQ=60)
AGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGGGATCATCT > SRR4302533.5640673/1‑94 (MQ=60)
GACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCC > SRR4302533.4155602/1‑94 (MQ=60)
ACATCTCGCTGAAAATTAGGCGGAATGTTTGTCGCGAATGTATAGCGTCCGGCCTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCG < SRR4302533.464475/94‑1 (MQ=60)
ACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCG < SRR4302533.3096069/94‑1 (MQ=60)
ATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGT > SRR4302533.2190643/1‑94 (MQ=60)
TCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTG < SRR4302533.5918689/94‑1 (MQ=60)
TCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTG < SRR4302533.4059249/94‑1 (MQ=60)
CACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGG < SRR4302533.1663596/94‑1 (MQ=60)
ACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGC > SRR4302533.1100540/1‑94 (MQ=60)
CGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCA > SRR4302533.5630598/1‑94 (MQ=60)
GCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAA > SRR4302533.3770158/1‑94 (MQ=60)
GCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAA > SRR4302533.6212682/1‑94 (MQ=60)
GCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAA > SRR4302533.423859/1‑94 (MQ=60)
CTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGCCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTCGCAAA > SRR4302533.2749412/1‑94 (MQ=60)
TGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAA > SRR4302533.2151002/1‑94 (MQ=60)
GAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAA < SRR4302533.5673653/94‑1 (MQ=60)
GAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAA < SRR4302533.4088516/94‑1 (MQ=60)
AAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAAC < SRR4302533.5045070/94‑1 (MQ=60)
AAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACC > SRR4302533.3162521/1‑94 (MQ=60)
AAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACC > SRR4302533.6230116/1‑94 (MQ=60)
AATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCA > SRR4302533.2958511/1‑94 (MQ=60)
AATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCA > SRR4302533.6333129/1‑94 (MQ=60)
ATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCAC < SRR4302533.3015332/94‑1 (MQ=60)
ATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCAC < SRR4302533.1547476/94‑1 (MQ=60)
ATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCAC < SRR4302533.2194757/94‑1 (MQ=60)
TTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACG > SRR4302533.6254921/1‑94 (MQ=60)
TTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACG < SRR4302533.4470967/94‑1 (MQ=60)
TAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGG < SRR4302533.5882926/94‑1 (MQ=60)
TAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGG < SRR4302533.4349682/94‑1 (MQ=60)
TAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGGGGCAAAAAACACGG > SRR4302533.6112875/1‑94 (MQ=60)
AGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGC > SRR4302533.2108898/1‑94 (MQ=60)
AGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGA > SRR4302533.2258638/1‑94 (MQ=60)
GGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGGAAAAACCACGGAC > SRR4302533.1112017/1‑94 (MQ=60)
GGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGAC < SRR4302533.76407/94‑1 (MQ=60)
GCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACG < SRR4302533.3806400/94‑1 (MQ=60)
GCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACG > SRR4302533.861585/1‑94 (MQ=60)
GCGGAATGTTTATCGCGAAGGCATAGCGTTCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGGGATCATCTTCGGGGGGAAAAACCACGGACG > SRR4302533.5666568/1‑94 (MQ=60)
CGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGA > SRR4302533.4005010/1‑94 (MQ=60)
CGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGA > SRR4302533.2212039/1‑94 (MQ=60)
GGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGAT > SRR4302533.1026774/1‑94 (MQ=60)
GGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGAT < SRR4302533.1291456/94‑1 (MQ=60)
GGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGAT > SRR4302533.4779793/1‑94 (MQ=60)
GGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGAT > SRR4302533.5058619/1‑94 (MQ=60)
GAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATA < SRR4302533.836699/94‑1 (MQ=60)
GAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATA < SRR4302533.5074076/94‑1 (MQ=60)
AATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAG < SRR4302533.2055251/94‑1 (MQ=60)
ATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGA > SRR4302533.3656804/1‑94 (MQ=60)
ATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGA > SRR4302533.4561996/1‑94 (MQ=60)
TGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAA < SRR4302533.6339468/94‑1 (MQ=60)
TGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAA < SRR4302533.5986680/94‑1 (MQ=60)
TGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAA > SRR4302533.132011/1‑94 (MQ=60)
TGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAA > SRR4302533.1421594/1‑94 (MQ=60)
TTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAAG < SRR4302533.4787723/94‑1 (MQ=60)
GTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAAG < SRR4302533.3944520/94‑1 (MQ=60)
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GGTAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATATTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAAG > NC_000913/3624042‑3624228
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |