Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,624,700	T→C	I807V (ATT→GTT)	yhiH ←	putative ATP‑binding component of a transport system, fragment 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,624,700	0	T	C	99.6%	867.5 / NA	271	I807V (ATT→GTT)	yhiH	putative ATP‑binding component of a transport system, fragment 1
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (133/137); minor base A (0/1); total (133/138)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 279 total aligned reads displayed.

GCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAATCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAAC  >  NC_000913/3624610‑3624789

gCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCt                                                                                         >  1:4076985/1‑93 (MQ=255)

gCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCt                                                                                         <  1:4874883/93‑1 (MQ=255)

gCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCt                                                                                         >  1:2088627/1‑93 (MQ=255)

 cccTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTg                                                                                        <  1:739252/93‑1 (MQ=255)

  ccTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTgg                                                                                       >  2:5921604/1‑93 (MQ=255)

  ccTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTgg                                                                                       >  1:5504368/1‑93 (MQ=255)

    ttCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCt                                                                                     >  1:4810943/1‑93 (MQ=255)

    ttCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCt                                                                                     <  1:945508/93‑1 (MQ=255)

      ccAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCttt                                                                                   <  1:2599576/93‑1 (MQ=255)

       cAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCtttt                                                                                  >  2:492692/1‑93 (MQ=255)

         gCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCa                                                                                >  1:5560627/1‑93 (MQ=255)

          cGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCAt                                                                               <  1:611469/93‑1 (MQ=255)

           gAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATa                                                                              >  2:1993704/1‑93 (MQ=255)

           gAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCCGGCTTTTCATa                                                                              >  2:4656381/1‑93 (MQ=255)

             aGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGTGGCAACCTGGCTTTTCATaaa                                                                            >  2:2921760/1‑93 (MQ=255)

             aGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGGTTTTCATaaa                                                                            >  2:4415527/1‑93 (MQ=255)

             aGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATaaa                                                                            >  2:4251360/1‑93 (MQ=255)

               cTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAgg                                                                          <  2:125901/93‑1 (MQ=255)

                tACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGCAAATGGAGGCACCCTGGCTTTTCATCAAggc                                                                         >  2:2671134/1‑92 (MQ=255)

                tACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGt                                                                         <  1:5385754/93‑1 (MQ=255)

                tACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGt                                                                         >  2:4878931/1‑93 (MQ=255)

                 aCCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTg                                                                        >  2:3151506/1‑93 (MQ=255)

                 aCCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTg                                                                        <  2:3505420/93‑1 (MQ=255)

                 aCCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTg                                                                        <  1:3330571/93‑1 (MQ=255)

                  ccGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTgg                                                                       <  1:2365994/93‑1 (MQ=255)

                     gatcgatcATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGgaga                                                                    >  1:529707/1‑93 (MQ=255)

                     gatcgatcATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGgaga                                                                    >  1:967939/1‑93 (MQ=255)

                     gatcgatcATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGgaga                                                                    <  2:716195/93‑1 (MQ=255)

                       tcgatcATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATc                                                                  <  2:3741080/93‑1 (MQ=255)

                        cgatcATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATca                                                                 >  1:3038625/1‑93 (MQ=255)

                          atcatcCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATcagc                                                               >  2:1508095/1‑93 (MQ=255)

                           tcatcCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATcagca                                                              >  2:1684628/1‑93 (MQ=255)

                           tcatcCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATcagca                                                              <  2:5832455/93‑1 (MQ=255)

                           tcatcCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATcagca                                                              >  2:4808397/1‑93 (MQ=255)

                           tcatcCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATcagca                                                              >  1:296182/1‑93 (MQ=255)

                            catcCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATcagcag                                                             <  1:3006283/93‑1 (MQ=255)

                            catcCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGCGGAGATcagcag                                                             >  1:2785335/1‑93 (MQ=255)

                            aatcCCGGAAAACTGTGTCGCCGAAATCAACGTGATATTCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATcagcag                                                             <  2:5492040/92‑1 (MQ=255)

                               cccGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGccc                                                          >  1:4627333/1‑93 (MQ=255)

                               cccGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGccc                                                          >  2:2314078/1‑93 (MQ=255)

                                ccGCAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGcccc                                                         <  1:3692125/93‑1 (MQ=255)

                                 cGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCa                                                        <  1:3735246/93‑1 (MQ=255)

                                 cGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCa                                                        >  1:598450/1‑93 (MQ=255)

                                   gAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCAtt                                                      >  1:5785688/1‑93 (MQ=255)

                                   gAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCAtt                                                      >  2:2806576/1‑93 (MQ=255)

                                     aaaCTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTcc                                                    <  1:855796/93‑1 (MQ=255)

                                       aCTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCgg                                                  <  1:5026265/93‑1 (MQ=255)

                                        cTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGt                                                 <  2:4057783/93‑1 (MQ=255)

                                         tgtgTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTg                                                >  1:2283575/1‑93 (MQ=255)

                                         tgtgTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTg                                                <  1:3139709/93‑1 (MQ=255)

                                            gtCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCa                                             >  2:6290983/1‑93 (MQ=255)

                                             tCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCaa                                            >  1:1307702/1‑93 (MQ=255)

                                              cGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAat                                           <  2:1646483/93‑1 (MQ=255)

                                               gCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAatg                                          >  2:1357603/1‑93 (MQ=255)

                                                  gggATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAatgatg                                       <  2:5385699/93‑1 (MQ=255)

                                                   ggATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAAtgatga                                      <  2:6106240/93‑1 (MQ=255)

                                                    gATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATgatgat                                     >  1:6278055/1‑93 (MQ=255)

                                                     aTCAACGTGATAATCGCCGCTCCGAAAAGGGCCGCACCCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAAtgatgaga                                    <  2:2225140/93‑3 (MQ=255)

                                                      tCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGGCCCATTCCGGTGGCAATGATGatat                                   >  2:5014289/1‑93 (MQ=255)

                                                      tCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGatat                                   >  2:2784809/1‑93 (MQ=255)

                                                       cAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGAtata                                  >  2:21339/1‑93 (MQ=255)

                                                        aaCGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAc                                 <  1:1082905/93‑1 (MQ=255)

                                                        aaCGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAc                                 <  2:1089831/93‑1 (MQ=255)

                                                        aaCGTGATAATCGCCGTTCAGAAGATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAc                                 <  2:5234583/93‑1 (MQ=255)

                                                         aCGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAca                                >  2:3935050/1‑93 (MQ=255)

                                                         aCGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAca                                >  2:1888447/1‑93 (MQ=255)

                                                         aCGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAca                                >  2:6212310/1‑93 (MQ=255)

                                                         aCGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAca                                >  2:3032127/1‑93 (MQ=255)

                                                         aCGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAca                                <  2:3212890/93‑1 (MQ=255)

                                                          cGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAcag                               >  2:5073614/1‑93 (MQ=255)

                                                           gTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAcagc                              >  1:4482119/1‑93 (MQ=255)

                                                           gTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAcagc                              <  2:3605766/93‑1 (MQ=255)

                                                           gTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGGGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAcagc                              >  1:100565/1‑93 (MQ=255)

                                                            tGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCTATGATGATATAcagca                             <  1:4576646/93‑1 (MQ=255)

                                                             gATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAcagcag                            >  1:3623763/1‑93 (MQ=255)

                                                             gATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAcagcag                            <  2:2166153/93‑1 (MQ=255)

                                                              aTAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACagcagc                           <  1:5629299/93‑1 (MQ=255)

                                                              aTAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACagcagc                           <  1:6005999/93‑1 (MQ=255)

                                                               tAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAgcg                          <  1:4680393/93‑1 (MQ=255)

                                                               tAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAgcg                          >  1:3999884/1‑93 (MQ=255)

                                                                aaTCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGTTATACAGAAccgc                         >  1:5542906/1‑93 (MQ=255)

                                                                 aTCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGcgcc                        >  2:2055252/1‑93 (MQ=255)

                                                                    gCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCgccgcc                     >  2:365820/1‑93 (MQ=255)

                                                                    gCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCgccgcc                     >  2:3283852/1‑93 (MQ=255)

                                                                    gCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCgccgcc                     >  2:894240/1‑93 (MQ=255)

                                                                     ccGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCa                    >  1:2696318/1‑93 (MQ=255)

                                                                       gTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAgg                  >  1:1585441/1‑93 (MQ=255)

                                                                        ttCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAggg                 >  1:428121/1‑93 (MQ=255)

                                                                        ttCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAggg                 <  1:1803672/93‑1 (MQ=255)

                                                                        ttCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAggg                 <  1:1651258/93‑1 (MQ=255)

                                                                         tCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAgggg                >  1:3532534/1‑92 (MQ=255)

                                                                          ccGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTg               >  2:4320592/1‑93 (MQ=255)

                                                                          ccGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTg               <  2:5640485/93‑1 (MQ=255)

                                                                           cGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGa              <  1:4131795/93‑1 (MQ=255)

                                                                             aaaaTGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGc            <  1:5086705/93‑1 (MQ=255)

                                                                                aTGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGCGGCAATGATGATATACAGCAGCGCCGCCAGGGCGAGCGTc         >  2:1530688/1‑93 (MQ=255)

                                                                                    cggcAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGa     <  2:469848/93‑1 (MQ=255)

                                                                                    cggcAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGa     <  2:1877487/93‑1 (MQ=255)

                                                                                      gcAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGaaa   <  1:118082/93‑1 (MQ=255)

                                                                                       cAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAAc  <  1:2036511/93‑1 (MQ=255)

GCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAATCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAAC  >  NC_000913/3624610‑3624789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGGCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAATCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTGCC  >  NC_000913/3624608‑3624793

AGGCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACC                                                                                              >  SRR4302533.2780427/1‑94 (MQ=60)

 GGCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCT                                                                                             >  SRR4302533.4101802/1‑94 (MQ=60)

 GGCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCT                                                                                             <  SRR4302533.2151155/94‑1 (MQ=60)

 GGCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCT                                                                                             >  SRR4302533.2101487/1‑94 (MQ=60)

 GGCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCT                                                                                             >  SRR4302533.6300709/1‑94 (MQ=60)

  GCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCTCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTG                                                                                            <  SRR4302533.4108342/94‑1 (MQ=60)

  GCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTG                                                                                            <  SRR4302533.4904418/94‑1 (MQ=60)

  GCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTG                                                                                            <  SRR4302533.2523370/94‑1 (MQ=60)

   CCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGG                                                                                           <  SRR4302533.3046359/94‑1 (MQ=60)

   CCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGG                                                                                           >  SRR4302533.5537580/1‑94 (MQ=60)

   CCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGG                                                                                           <  SRR4302533.743605/94‑1 (MQ=60)

    CCTTCCAGCGAATCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGC                                                                                          <  SRR4302533.3956104/94‑1 (MQ=60)

    CCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGC                                                                                          >  SRR4302533.4865726/1‑94 (MQ=60)

     CTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCT                                                                                         >  SRR4302533.4840102/1‑94 (MQ=60)

      TTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTT                                                                                        <  SRR4302533.951069/94‑1 (MQ=60)

        CCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTT                                                                                      <  SRR4302533.2615551/94‑1 (MQ=60)

          AGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCA                                                                                    >  SRR4302533.5594232/1‑94 (MQ=60)

          AGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCA                                                                                    >  SRR4302533.5439480/1‑94 (MQ=60)

          AGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGAGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCA                                                                                    >  SRR4302533.3396489/1‑94 (MQ=60)

            GGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTGGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATA                                                                                  <  SRR4302533.1039917/94‑1 (MQ=60)

            CGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATA                                                                                  <  SRR4302533.615064/94‑1 (MQ=60)

             GAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAA                                                                                 <  SRR4302533.5185859/94‑1 (MQ=60)

              AAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAA                                                                                <  SRR4302533.4740976/94‑1 (MQ=60)

               AGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAG                                                                               <  SRR4302533.5599446/94‑1 (MQ=60)

                GCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGG                                                                              <  SRR4302533.407751/94‑1 (MQ=60)

                  TACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTG                                                                            >  SRR4302533.502969/1‑94 (MQ=60)

                  TACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTG                                                                            <  SRR4302533.5418113/94‑1 (MQ=60)

                   ACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGG                                                                           <  SRR4302533.3351158/94‑1 (MQ=60)

                   ACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGG                                                                           >  SRR4302533.5381703/1‑94 (MQ=60)

                    CCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGA                                                                          >  SRR4302533.2982798/1‑94 (MQ=60)

                    CCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGA                                                                          <  SRR4302533.2380629/94‑1 (MQ=60)

                     CGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAG                                                                         <  SRR4302533.3100569/94‑1 (MQ=60)

                     CGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAG                                                                         <  SRR4302533.250929/94‑1 (MQ=60)

                      GGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGA                                                                        >  SRR4302533.973615/1‑94 (MQ=60)

                      GGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGA                                                                        <  SRR4302533.946492/94‑1 (MQ=60)

                      GGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGA                                                                        >  SRR4302533.532858/1‑94 (MQ=60)

                      GGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGA                                                                        <  SRR4302533.2723204/94‑1 (MQ=60)

                       GATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGAT                                                                       <  SRR4302533.1600306/94‑1 (MQ=60)

                       GATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGAT                                                                       <  SRR4302533.2741137/94‑1 (MQ=60)

                        ATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATC                                                                      <  SRR4302533.4436808/94‑1 (MQ=60)

                         TCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCA                                                                     <  SRR4302533.1462030/94‑1 (MQ=60)

                         TCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCA                                                                     >  SRR4302533.3057218/1‑94 (MQ=60)

                          CGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAG                                                                    <  SRR4302533.5078679/94‑1 (MQ=60)

                           GATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGC                                                                   >  SRR4302533.3722449/1‑94 (MQ=60)

                            ATCATGCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCA                                                                  <  SRR4302533.969907/94‑1 (MQ=60)

                            ATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCA                                                                  >  SRR4302533.297994/1‑94 (MQ=60)

                            ATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCA                                                                  >  SRR4302533.5540921/1‑94 (MQ=60)

                            ATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCA                                                                  >  SRR4302533.603477/1‑94 (MQ=60)

                            ATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCA                                                                  >  SRR4302533.2137667/1‑94 (MQ=60)

                             TCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGCGGAGATCAGCAG                                                                 >  SRR4302533.2802450/1‑94 (MQ=60)

                              CATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGC                                                                <  SRR4302533.3024672/94‑1 (MQ=60)

                               ATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCCGCC                                                               >  SRR4302533.6111739/1‑94 (MQ=60)

                               ATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCC                                                               >  SRR4302533.630290/1‑94 (MQ=60)

                               ATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCC                                                               >  SRR4302533.2874113/1‑94 (MQ=60)

                               ATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCC                                                               >  SRR4302533.5803397/1‑94 (MQ=60)

                                TCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCC                                                              >  SRR4302533.4655379/1‑94 (MQ=60)

                                  CCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCA                                                            >  SRR4302533.601975/1‑94 (MQ=60)

                                  CCGCAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCA                                                            <  SRR4302533.3714810/94‑1 (MQ=60)

                                   CGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCAT                                                           >  SRR4302533.2338750/1‑94 (MQ=60)

                                   CGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCAT                                                           <  SRR4302533.3758161/94‑1 (MQ=60)

                                   CGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCAT                                                           >  SRR4302533.5884468/1‑94 (MQ=60)

                                    GGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATT                                                          >  SRR4302533.5576399/1‑94 (MQ=60)

                                    GGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATT                                                          >  SRR4302533.589398/1‑94 (MQ=60)

                                    GGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATT                                                          >  SRR4302533.4626428/1‑94 (MQ=60)

                                    GGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATT                                                          >  SRR4302533.5820631/1‑94 (MQ=60)

                                     GAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTC                                                         >  SRR4302533.2700280/1‑94 (MQ=60)

                                      AAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCC                                                        <  SRR4302533.455256/94‑1 (MQ=60)

                                       AAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCG                                                       <  SRR4302533.860811/94‑1 (MQ=60)

                                         ACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGT                                                     <  SRR4302533.5056699/94‑1 (MQ=60)

                                          CTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTG                                                    >  SRR4302533.1134992/1‑94 (MQ=60)

                                          CTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTG                                                    <  SRR4302533.2049986/94‑1 (MQ=60)

                                          CTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTG                                                    >  SRR4302533.2297709/1‑94 (MQ=60)

                                          CTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTG                                                    >  SRR4302533.1758171/1‑94 (MQ=60)

                                           TGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGG                                                   <  SRR4302533.3159010/94‑1 (MQ=60)

                                           TGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGG                                                   <  SRR4302533.382070/94‑1 (MQ=60)

                                              GTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAA                                                >  SRR4302533.1315554/1‑94 (MQ=60)

                                              GTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAA                                                >  SRR4302533.3709558/1‑94 (MQ=60)

                                              GTCGCCGGGATCAACGTGATAATCGCCGGTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAA                                                <  SRR4302533.3106225/94‑1 (MQ=60)

                                                 GCGGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGA                                             <  SRR4302533.5211418/94‑1 (MQ=60)

                                                 GCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGA                                             <  SRR4302533.831578/94‑1 (MQ=60)

                                                 GCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGA                                             <  SRR4302533.3570391/94‑1 (MQ=60)

                                                  CCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGAT                                            <  SRR4302533.991937/94‑1 (MQ=60)

                                                    GGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGA                                          >  SRR4302533.990627/1‑94 (MQ=60)

                                                     GGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGAT                                         >  SRR4302533.6315537/1‑94 (MQ=60)

                                                     GGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGAT                                         >  SRR4302533.535957/1‑94 (MQ=60)

                                                     GGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGAT                                         <  SRR4302533.1205531/94‑1 (MQ=60)

                                                       ATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATAT                                       >  SRR4302533.115988/1‑94 (MQ=60)

                                                       ATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATAT                                       <  SRR4302533.3452528/94‑1 (MQ=60)

                                                        TCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCGATGATGATATA                                      >  SRR4302533.1571131/1‑94 (MQ=60)

                                                         CAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAC                                     >  SRR4302533.4416310/1‑94 (MQ=60)

                                                         CAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAC                                     <  SRR4302533.5656278/94‑1 (MQ=60)

                                                         CAACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGCGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATAC                                     >  SRR4302533.4241018/1‑94 (MQ=60)

                                                          AACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACA                                    <  SRR4302533.1089292/94‑1 (MQ=60)

                                                           ACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAG                                   <  SRR4302533.4599102/94‑1 (MQ=60)

                                                           ACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAG                                   <  SRR4302533.1985236/94‑1 (MQ=60)

                                                           ACGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAG                                   >  SRR4302533.4869598/1‑94 (MQ=60)

                                                            CGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGC                                  >  SRR4302533.4509260/1‑94 (MQ=60)

                                                            CGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGC                                  <  SRR4302533.4273287/94‑1 (MQ=60)

                                                            CGTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGGGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGC                                  >  SRR4302533.101191/1‑94 (MQ=60)

                                                             GTGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTTGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCA                                 <  SRR4302533.3216671/94‑1 (MQ=60)

                                                              TGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCTATGATGATATACAGCAG                                <  SRR4302533.4604384/94‑1 (MQ=60)

                                                              TGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAG                                >  SRR4302533.3646064/1‑94 (MQ=60)

                                                              TGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAG                                >  SRR4302533.4142288/1‑94 (MQ=60)

                                                              TGATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGAGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAG                                >  SRR4302533.970506/1‑94 (MQ=60)

                                                               GATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGC                               >  SRR4302533.1315252/1‑94 (MQ=60)

                                                                ATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCG                              <  SRR4302533.6042388/94‑1 (MQ=60)

                                                                ATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCG                              <  SRR4302533.5663339/94‑1 (MQ=60)

                                                                ATAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCG                              >  SRR4302533.4024237/1‑94 (MQ=60)

                                                                 TAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGTTATACAGAACCGC                             >  SRR4302533.5576381/1‑94 (MQ=60)

                                                                 TAATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGC                             <  SRR4302533.4708756/94‑1 (MQ=60)

                                                                  AATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAACAGCGCC                            >  SRR4302533.1904466/1‑94 (MQ=60)

                                                                   ATCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCG                           <  SRR4302533.4679013/94‑1 (MQ=60)

                                                                    TCGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGC                          >  SRR4302533.3657392/1‑94 (MQ=60)

                                                                     CGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCC                         >  SRR4302533.4694812/1‑94 (MQ=60)

                                                                     CGCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCC                         >  SRR4302533.1759087/1‑94 (MQ=60)

                                                                      GCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCA                        >  SRR4302533.4804659/1‑94 (MQ=60)

                                                                      GCCGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCA                        >  SRR4302533.2712840/1‑94 (MQ=60)

                                                                        CGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGG                      >  SRR4302533.1594993/1‑94 (MQ=60)

                                                                        CGTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGG                      <  SRR4302533.2162618/94‑1 (MQ=60)

                                                                        CGTTCCGAAAATGGCGGCAAACTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTGCGGTGGCAATGATGATATACAGCAGCGCCGCCAGG                      <  SRR4302533.3048197/94‑1 (MQ=60)

                                                                         GTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGG                     >  SRR4302533.430674/1‑94 (MQ=60)

                                                                         GTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGG                     >  SRR4302533.5564049/1‑94 (MQ=60)

                                                                         GTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGG                     <  SRR4302533.3722897/94‑1 (MQ=60)

                                                                         GTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGG                     <  SRR4302533.2906188/94‑1 (MQ=60)

                                                                         GTTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGG                     >  SRR4302533.837360/1‑94 (MQ=60)

                                                                          TTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGT                    <  SRR4302533.646302/94‑1 (MQ=60)

                                                                          TTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGT                    <  SRR4302533.1661261/94‑1 (MQ=60)

                                                                          TTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGT                    <  SRR4302533.1814650/94‑1 (MQ=60)

                                                                          TTCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGG                    >  SRR4302533.3554302/1‑94 (MQ=60)

                                                                           TCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTG                   <  SRR4302533.634694/94‑1 (MQ=60)

                                                                           TCCGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTG                   <  SRR4302533.5465081/94‑1 (MQ=60)

                                                                             CGAAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAG                 <  SRR4302533.4156875/94‑1 (MQ=60)

                                                                               AAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCG               >  SRR4302533.6088012/1‑94 (MQ=60)

                                                                               AAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCG               <  SRR4302533.5117441/94‑1 (MQ=60)

                                                                               AAAATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCG               <  SRR4302533.2621811/94‑1 (MQ=60)

                                                                                 AATGGCGGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTC             >  SRR4302533.2080730/1‑94 (MQ=60)

                                                                                       GGCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAA       >  SRR4302533.3291473/1‑94 (MQ=60)

                                                                                        GCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAAC      >  SRR4302533.5680706/1‑94 (MQ=60)

                                                                                        GCAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAAC      <  SRR4302533.118831/94‑1 (MQ=60)

                                                                                         CAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACT     >  SRR4302533.5635972/1‑94 (MQ=60)

                                                                                         CAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACT     <  SRR4302533.4934611/94‑1 (MQ=60)

                                                                                         CAACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACT     <  SRR4302533.2049071/94‑1 (MQ=60)

                                                                                          AACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTG    <  SRR4302533.6117470/94‑1 (MQ=60)

                                                                                          AACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTG    <  SRR4302533.992383/94‑1 (MQ=60)

                                                                                          AACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTG    >  SRR4302533.1408982/1‑94 (MQ=60)

                                                                                          AACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTG    >  SRR4302533.1948357/1‑94 (MQ=60)

                                                                                          AACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTG    >  SRR4302533.2111476/1‑94 (MQ=60)

                                                                                          AACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTG    >  SRR4302533.3938411/1‑94 (MQ=60)

                                                                                          AACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTG    <  SRR4302533.4703228/94‑1 (MQ=60)

                                                                                           ACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTGC   <  SRR4302533.478018/94‑1 (MQ=60)

                                                                                           ACCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTGC   >  SRR4302533.5932018/1‑94 (MQ=60)

                                                                                            CCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTGCC  >  SRR4302533.3496564/1‑94 (MQ=60)

AGGCCCTTCCAGCGAAGCTACCGGATCGATCATCCCGGAAAACTGTGTCGCCGGGATCAACGTGATAATCGCCGTTCCGAAAATGGCGGCAATCTGGCTTTTCATAAAGGTGGAGATCAGCAGCCCCATTCCGGTGGCAATGATGATATACAGCAGCGCCGCCAGGGTGAGCGTCAGGAAACTGCC  >  NC_000913/3624608‑3624793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`