Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,705,464 T→C intergenic (‑130/+781) dppA ← / ← proK dipeptide transport protein/tRNA‑Pro

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,705,4640TC100.0% 843.1 / NA 258intergenic (‑130/+781)dppA/proKdipeptide transport protein/tRNA‑Pro
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (133/125);  total (133/125)

Only 100 of 261 total aligned reads displayed.

TGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGTGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTT  >  NC_000913/3705374‑3705553
                                                                                          |                                                                                         
   aGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAAc                                                                                      >  1:973271/1‑93 (MQ=255)
   aGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAAc                                                                                      <  1:1859293/93‑1 (MQ=255)
   aGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAAc                                                                                      <  2:302372/93‑1 (MQ=255)
    gTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACa                                                                                     <  2:2728813/93‑1 (MQ=255)
    gTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACa                                                                                     >  2:2978504/1‑93 (MQ=255)
    gTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACa                                                                                     <  1:2624990/93‑1 (MQ=255)
    gTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACa                                                                                     >  2:1373530/1‑93 (MQ=255)
     tGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAg                                                                                    <  1:4396113/93‑1 (MQ=255)
      gggTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGt                                                                                   <  1:1348540/93‑1 (MQ=255)
       ggTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTg                                                                                  <  2:3696958/93‑1 (MQ=255)
        gTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGc                                                                                 <  1:569042/93‑1 (MQ=255)
        gTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGc                                                                                 >  1:4961917/1‑93 (MQ=255)
           gTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGa                                                                              <  2:1214146/93‑1 (MQ=255)
             cGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGAtc                                                                            >  1:141285/1‑93 (MQ=255)
              gCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGAtcc                                                                           >  1:6149874/1‑93 (MQ=255)
              gCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGAtcc                                                                           >  2:1271571/1‑93 (MQ=255)
               cTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGAtcct                                                                          >  2:3535514/1‑93 (MQ=255)
               cTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGAtcct                                                                          >  1:3452954/1‑93 (MQ=255)
               cTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACACCAGCGTAACAGTGCGGAtcct                                                                          >  1:6280077/1‑93 (MQ=255)
                 gCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGAtcctcc                                                                        >  1:5561498/1‑93 (MQ=255)
                 gCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGAtcctcc                                                                        >  1:4290889/1‑93 (MQ=255)
                  ccTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCa                                                                       >  1:1272105/1‑93 (MQ=255)
                  ccTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCa                                                                       <  1:1970631/93‑1 (MQ=255)
                   cTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCAt                                                                      >  1:1791914/1‑93 (MQ=255)
                   cTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCAt                                                                      >  1:5177199/1‑93 (MQ=255)
                     gACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATaa                                                                    >  1:3749313/1‑93 (MQ=255)
                     gACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATaa                                                                    <  1:2009301/93‑1 (MQ=255)
                       ccTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATaaaa                                                                  <  2:4597013/93‑1 (MQ=255)
                       ccTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATaaaa                                                                  <  1:6307874/93‑1 (MQ=255)
                       ccTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATaaaa                                                                  <  2:1163952/93‑1 (MQ=255)
                         ttttttgttttttgCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATg                                                                <  2:2099570/93‑1 (MQ=255)
                         ttttttgttttttgCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATg                                                                >  2:1017790/1‑93 (MQ=255)
                          tttttgttttttgCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGc                                                               <  2:2790523/93‑1 (MQ=255)
                           ttttgttttttgCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGcc                                                              >  1:4506473/1‑93 (MQ=255)
                             ttgttttttgCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGcccc                                                            >  2:4441506/1‑93 (MQ=255)
                               gttttttgCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTc                                                          <  2:5935199/93‑1 (MQ=255)
                                ttttttgCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCg                                                         >  1:3024566/1‑93 (MQ=255)
                                ttttttgCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCg                                                         >  2:3594640/1‑93 (MQ=255)
                                    ttgCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGAc                                                     <  1:5215928/93‑1 (MQ=255)
                                        ccGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTAc                                                 >  2:2295151/1‑93 (MQ=255)
                                          ggTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACaa                                               >  2:5023647/1‑93 (MQ=255)
                                          ggTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACaa                                               >  1:5913339/1‑93 (MQ=255)
                                           gTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAAt                                              <  1:5734400/93‑1 (MQ=255)
                                            tCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATc                                             <  2:4087050/93‑1 (MQ=255)
                                             cGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCt                                            <  1:3559216/93‑1 (MQ=255)
                                             cGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCt                                            <  2:2457233/93‑1 (MQ=255)
                                             cGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCt                                            <  1:5948204/93‑1 (MQ=255)
                                               ggTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGt                                          >  1:4069695/1‑93 (MQ=255)
                                                gTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTc                                         >  2:854273/1‑93 (MQ=255)
                                                gTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTc                                         <  1:5403994/93‑1 (MQ=255)
                                                  cAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCaa                                       >  2:4626015/1‑93 (MQ=255)
                                                   aaCGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAAc                                      <  1:4452434/93‑1 (MQ=255)
                                                   aaCGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAAc                                      >  1:1336156/1‑93 (MQ=255)
                                                    aCGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACa                                     >  1:6203224/1‑93 (MQ=255)
                                                    aCGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACa                                     >  2:2355658/1‑93 (MQ=255)
                                                    aCGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACa                                     <  2:2165328/93‑1 (MQ=255)
                                                     cGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAg                                    <  1:5532379/93‑1 (MQ=255)
                                                       ttATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGaa                                  <  1:4948506/93‑1 (MQ=255)
                                                        tATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAAt                                 <  1:2381646/93‑1 (MQ=255)
                                                        tATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAAt                                 <  2:1638154/93‑1 (MQ=255)
                                                        tATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAAt                                 <  2:5504741/93‑1 (MQ=255)
                                                        tATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAAt                                 <  1:3839805/93‑1 (MQ=255)
                                                           gAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAAtgtg                              <  1:4825791/93‑1 (MQ=255)
                                                            aGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGa                             >  2:3568286/1‑93 (MQ=255)
                                                               tGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGaaaa                          <  1:2103982/93‑1 (MQ=255)
                                                                 gggATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACg                        <  2:2553538/93‑1 (MQ=255)
                                                                 gggATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACg                        >  2:480189/1‑93 (MQ=255)
                                                                  ggATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGt                       <  1:2151937/93‑1 (MQ=255)
                                                                    aTGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCa                     <  1:3258608/93‑1 (MQ=255)
                                                                    aTGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCa                     <  2:5690823/93‑1 (MQ=255)
                                                                    aTGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCa                     >  1:1488505/1‑93 (MQ=255)
                                                                     tGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCaa                    >  2:678036/1‑93 (MQ=255)
                                                                     tGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCaa                    <  1:6038771/93‑1 (MQ=255)
                                                                      gCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAAt                   <  2:5577675/93‑1 (MQ=255)
                                                                      gCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAAt                   >  1:2866600/1‑93 (MQ=255)
                                                                      gCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAAt                   >  1:832605/1‑93 (MQ=255)
                                                                       ccGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATa                  >  2:1942762/1‑93 (MQ=255)
                                                                       ccGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATa                  <  2:199206/93‑1 (MQ=255)
                                                                        cGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATAc                 <  1:2900221/93‑1 (MQ=255)
                                                                         gTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACa                >  1:4574073/1‑93 (MQ=255)
                                                                          tACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAGTACAg               >  1:2478621/1‑93 (MQ=255)
                                                                          tACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAg               >  2:3227622/1‑93 (MQ=255)
                                                                          tACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAg               >  1:5207928/1‑93 (MQ=255)
                                                                          tACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAg               <  2:3410602/93‑1 (MQ=255)
                                                                           aCTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGc              <  2:5397303/93‑1 (MQ=255)
                                                                            cTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGcc             >  1:102066/1‑93 (MQ=255)
                                                                            cTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGcc             >  1:3896898/1‑93 (MQ=255)
                                                                             tAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCa            >  1:2538479/1‑93 (MQ=255)
                                                                              aaTTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCaa           >  2:4842187/1‑93 (MQ=255)
                                                                               aTTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAAc          <  2:1726520/93‑1 (MQ=255)
                                                                                ttAACATCAGCGTAACAGTGCGGGTCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGACAAcc         >  2:5077519/1‑93 (MQ=255)
                                                                                ttAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAAcc         >  2:4946193/1‑93 (MQ=255)
                                                                                ttAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAAcc         >  1:1852292/1‑93 (MQ=255)
                                                                                ttAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAAcc         >  2:4297804/1‑93 (MQ=255)
                                                                                    cATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGa     <  1:1569605/93‑1 (MQ=255)
                                                                                    cATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGa     <  1:5367110/93‑1 (MQ=255)
                                                                                    cATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGa     <  2:753835/93‑1 (MQ=255)
                                                                                     aTCAGCGTAACAGTGCGGAGCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGAt    >  2:6129187/1‑93 (MQ=255)
                                                                                      tCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGAtt   >  2:3890541/1‑93 (MQ=255)
                                                                                       cAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGAttt  <  1:2804465/93‑1 (MQ=255)
                                                                                          |                                                                                         
TGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGTGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTT  >  NC_000913/3705374‑3705553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTTTGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGTGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACAC  >  NC_000913/3705371‑3705557
                                                                                             |                                                                                             
CTTTGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGC                                                                                               >  SRR4302533.3919645/1‑94 (MQ=60)
CTTTGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGC                                                                                               >  SRR4302533.328600/1‑94 (MQ=60)
CTTTGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGC                                                                                               >  SRR4302533.3392913/1‑94 (MQ=60)
CTTTGCAGTGGGTTGACGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGC                                                                                               >  SRR4302533.1107120/1‑94 (MQ=60)
 TTTGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCG                                                                                              >  SRR4302533.2467988/1‑94 (MQ=60)
 TTTGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCG                                                                                              <  SRR4302533.2696091/94‑1 (MQ=60)
 TTTGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCG                                                                                              <  SRR4302533.3644341/94‑1 (MQ=60)
  TTGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGT                                                                                             <  SRR4302533.5608410/94‑1 (MQ=60)
   TGCAGTGTGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTA                                                                                            <  SRR4302533.1858128/94‑1 (MQ=60)
   TGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTA                                                                                            >  SRR4302533.2872961/1‑94 (MQ=60)
    GCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAA                                                                                           >  SRR4302533.5403935/1‑94 (MQ=60)
     CAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAAC                                                                                          >  SRR4302533.978985/1‑94 (MQ=60)
      AGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACA                                                                                         <  SRR4302533.1870634/94‑1 (MQ=60)
      AGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACA                                                                                         >  SRR4302533.6208436/1‑94 (MQ=60)
       GTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAG                                                                                        <  SRR4302533.4049476/94‑1 (MQ=60)
       GTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAG                                                                                        <  SRR4302533.2641096/94‑1 (MQ=60)
       GTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAG                                                                                        >  SRR4302533.4106180/1‑94 (MQ=60)
        TGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGT                                                                                       <  SRR4302533.4422654/94‑1 (MQ=60)
         GGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTG                                                                                      <  SRR4302533.1356657/94‑1 (MQ=60)
         GGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTG                                                                                      >  SRR4302533.1603659/1‑94 (MQ=60)
          GGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGC                                                                                     <  SRR4302533.5260561/94‑1 (MQ=60)
          GGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGC                                                                                     >  SRR4302533.4992003/1‑94 (MQ=60)
          GGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGC                                                                                     <  SRR4302533.1869485/94‑1 (MQ=60)
           GTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCG                                                                                    <  SRR4302533.572408/94‑1 (MQ=60)
           GTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCG                                                                                    >  SRR4302533.3151033/1‑94 (MQ=60)
            TTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGG                                                                                   <  SRR4302533.1213185/94‑1 (MQ=60)
            TTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGG                                                                                   <  SRR4302533.3908491/94‑1 (MQ=60)
               TCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATC                                                                                >  SRR4302533.142188/1‑94 (MQ=60)
               TCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATC                                                                                <  SRR4302533.3416333/94‑1 (MQ=60)
                CGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCC                                                                               >  SRR4302533.6186893/1‑94 (MQ=60)
                 GCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCT                                                                              >  SRR4302533.3474273/1‑94 (MQ=60)
                 GCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACACCAGCGTAACAGTGCGGATCCT                                                                              >  SRR4302533.6317564/1‑94 (MQ=60)
                 GCTGCCTGACCTTTTTTGTTTTTTGCCCGGACGGGTGAACGTTATGAGGTGGGGATGCCGTATTAATTAACATCAGCGTAACAGTGCGGATACT                                                                              >  SRR4302533.2024800/1‑94 (MQ=60)
                   TGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCC                                                                            >  SRR4302533.4483022/1‑94 (MQ=60)
                   TGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCC                                                                            <  SRR4302533.1328510/94‑1 (MQ=60)
                   TGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCC                                                                            >  SRR4302533.5595105/1‑94 (MQ=60)
                   TGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCC                                                                            >  SRR4302533.4316694/1‑94 (MQ=60)
                    GCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCA                                                                           >  SRR4302533.2908058/1‑94 (MQ=60)
                    GCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCA                                                                           >  SRR4302533.1279714/1‑94 (MQ=60)
                     CCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCAT                                                                          <  SRR4302533.1982687/94‑1 (MQ=60)
                     CCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCAT                                                                          >  SRR4302533.5208467/1‑94 (MQ=60)
                     CCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCAT                                                                          >  SRR4302533.1802811/1‑94 (MQ=60)
                      CTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATA                                                                         >  SRR4302533.3478617/1‑94 (MQ=60)
                      CTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATA                                                                         >  SRR4302533.2906754/1‑94 (MQ=60)
                       TGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAA                                                                        >  SRR4302533.3772297/1‑94 (MQ=60)
                        GACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAA                                                                       <  SRR4302533.3871466/94‑1 (MQ=60)
                        GACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAA                                                                       <  SRR4302533.2021678/94‑1 (MQ=60)
                         ACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAA                                                                      >  SRR4302533.5996335/1‑94 (MQ=60)
                          CCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAAT                                                                     >  SRR4302533.2204098/1‑94 (MQ=60)
                          CCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAAT                                                                     <  SRR4302533.6345712/94‑1 (MQ=60)
                          CCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGAGCGGATCATCCATAAAAT                                                                     >  SRR4302533.2430703/1‑94 (MQ=60)
                           CTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATG                                                                    >  SRR4302533.6114895/1‑94 (MQ=60)
                           CTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATG                                                                    >  SRR4302533.79859/1‑94 (MQ=60)
                           CTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATG                                                                    <  SRR4302533.2030991/94‑1 (MQ=60)
                             TTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCC                                                                  >  SRR4302533.4533768/1‑94 (MQ=60)
                                TTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCT                                                               <  SRR4302533.4789649/94‑1 (MQ=60)
                                  GTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCG                                                             >  SRR4302533.3043070/1‑94 (MQ=60)
                                    TTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTG                                                           <  SRR4302533.5803583/94‑1 (MQ=60)
                                    TTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTG                                                           <  SRR4302533.4980758/94‑1 (MQ=60)
                                    TTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTG                                                           >  SRR4302533.5759998/1‑94 (MQ=60)
                                     TTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGA                                                          <  SRR4302533.4370240/94‑1 (MQ=60)
                                       TTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACC                                                        <  SRR4302533.5247332/94‑1 (MQ=60)
                                       TTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACC                                                        <  SRR4302533.550112/94‑1 (MQ=60)
                                       TTGCACCGTCGGGACAACTTTATGAGGTGGTGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACC                                                        <  SRR4302533.5431794/94‑1 (MQ=60)
                                          CCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTAC                                                     >  SRR4302533.1546626/1‑94 (MQ=60)
                                          CCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTAC                                                     <  SRR4302533.139804/94‑1 (MQ=60)
                                            CGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAA                                                   <  SRR4302533.6197209/94‑1 (MQ=60)
                                            CGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAA                                                   >  SRR4302533.5949074/1‑94 (MQ=60)
                                             GGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAAT                                                  <  SRR4302533.1347405/94‑1 (MQ=60)
                                              GTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATC                                                 <  SRR4302533.5769017/94‑1 (MQ=60)
                                              GTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATC                                                 <  SRR4302533.1292277/94‑1 (MQ=60)
                                               TCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCT                                                <  SRR4302533.1001688/94‑1 (MQ=60)
                                               TCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCT                                                >  SRR4302533.4471866/1‑94 (MQ=60)
                                                CGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTG                                               <  SRR4302533.5984182/94‑1 (MQ=60)
                                                CGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTG                                               <  SRR4302533.3581148/94‑1 (MQ=60)
                                                 GGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGT                                              >  SRR4302533.4094468/1‑94 (MQ=60)
                                                  GGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACGTCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTC                                             <  SRR4302533.6337833/94‑1 (MQ=60)
                                                  GGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTC                                             <  SRR4302533.2585904/94‑1 (MQ=60)
                                                   GTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCA                                            <  SRR4302533.1468901/94‑1 (MQ=60)
                                                   GTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCA                                            <  SRR4302533.5436468/94‑1 (MQ=60)
                                                    TCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAA                                           >  SRR4302533.226500/1‑94 (MQ=60)
                                                     CAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAAC                                          >  SRR4302533.4876360/1‑94 (MQ=60)
                                                     CAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAAC                                          >  SRR4302533.1344174/1‑94 (MQ=60)
                                                     CAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAAC                                          >  SRR4302533.4520147/1‑94 (MQ=60)
                                                      AACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACA                                         >  SRR4302533.5665437/1‑94 (MQ=60)
                                                      AACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACA                                         <  SRR4302533.4479353/94‑1 (MQ=60)
                                                      AACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACA                                         >  SRR4302533.6240426/1‑94 (MQ=60)
                                                        CGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGA                                       <  SRR4302533.5565780/94‑1 (MQ=60)
                                                        CGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGA                                       >  SRR4302533.4558579/1‑94 (MQ=60)
                                                         GTTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAA                                      >  SRR4302533.5588953/1‑94 (MQ=60)
                                                          TTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAAT                                     >  SRR4302533.5367034/1‑94 (MQ=60)
                                                          TTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAAT                                     <  SRR4302533.2952977/94‑1 (MQ=60)
                                                          TTATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAAT                                     <  SRR4302533.4978471/94‑1 (MQ=60)
                                                           TATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATG                                    <  SRR4302533.3863263/94‑1 (MQ=60)
                                                           TATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATG                                    <  SRR4302533.2396377/94‑1 (MQ=60)
                                                           TATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATG                                    <  SRR4302533.3747167/94‑1 (MQ=60)
                                                           TATGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATG                                    <  SRR4302533.1433216/94‑1 (MQ=60)
                                                             TGAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTG                                  <  SRR4302533.956069/94‑1 (MQ=60)
                                                              GAGGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGA                                 <  SRR4302533.4855034/94‑1 (MQ=60)
                                                                GGTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAA                               <  SRR4302533.5971488/94‑1 (MQ=60)
                                                                 GTGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAA                              <  SRR4302533.5236431/94‑1 (MQ=60)
                                                                  TGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAAC                             <  SRR4302533.2116953/94‑1 (MQ=60)
                                                                  TGGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAAC                             <  SRR4302533.5035517/94‑1 (MQ=60)
                                                                   GGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACG                            >  SRR4302533.4356892/1‑94 (MQ=60)
                                                                   GGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACG                            >  SRR4302533.1863856/1‑94 (MQ=60)
                                                                   GGGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACG                            <  SRR4302533.2468442/94‑1 (MQ=60)
                                                                    GGGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGT                           >  SRR4302533.521938/1‑94 (MQ=60)
                                                                     GGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTC                          <  SRR4302533.2524522/94‑1 (MQ=60)
                                                                     GGATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTC                          <  SRR4302533.2165191/94‑1 (MQ=60)
                                                                      GATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTGCAATCTGTCAACAGAATGTGAAAACGTCA                         <  SRR4302533.459516/94‑1 (MQ=60)
                                                                      GATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCA                         >  SRR4302533.1497483/1‑94 (MQ=60)
                                                                      GATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCA                         <  SRR4302533.359087/94‑1 (MQ=60)
                                                                      GATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCA                         <  SRR4302533.688484/94‑1 (MQ=60)
                                                                       ATGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAA                        <  SRR4302533.3278707/94‑1 (MQ=60)
                                                                        TGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAAT                       >  SRR4302533.6303705/1‑94 (MQ=60)
                                                                        TGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAAT                       >  SRR4302533.2884236/1‑94 (MQ=60)
                                                                        TGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAAT                       <  SRR4302533.6075367/94‑1 (MQ=60)
                                                                        TGCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAAT                       >  SRR4302533.837484/1‑94 (MQ=60)
                                                                         GCCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATA                      >  SRR4302533.1409879/1‑94 (MQ=60)
                                                                          CCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATAC                     >  SRR4302533.5589152/1‑94 (MQ=60)
                                                                          CCGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATAC                     <  SRR4302533.5241890/94‑1 (MQ=60)
                                                                           CGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACA                    <  SRR4302533.5927728/94‑1 (MQ=60)
                                                                           CGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACA                    <  SRR4302533.5735763/94‑1 (MQ=60)
                                                                           CGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACA                    <  SRR4302533.2918040/94‑1 (MQ=60)
                                                                           CGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACA                    >  SRR4302533.1703410/1‑94 (MQ=60)
                                                                           CGTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACA                    >  SRR4302533.4601793/1‑94 (MQ=60)
                                                                            GTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAGTACAG                   >  SRR4302533.2493907/1‑94 (MQ=60)
                                                                            GTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAG                   >  SRR4302533.6295844/1‑94 (MQ=60)
                                                                            GTACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAG                   >  SRR4302533.5239302/1‑94 (MQ=60)
                                                                             TACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGC                  >  SRR4302533.4047237/1‑94 (MQ=60)
                                                                             TACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGC                  <  SRR4302533.3141196/94‑1 (MQ=60)
                                                                             TACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGC                  >  SRR4302533.2842873/1‑94 (MQ=60)
                                                                              ACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCC                 >  SRR4302533.102702/1‑94 (MQ=60)
                                                                              ACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCC                 >  SRR4302533.3920677/1‑94 (MQ=60)
                                                                              ACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCC                 >  SRR4302533.3360091/1‑94 (MQ=60)
                                                                              ACTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCC                 <  SRR4302533.2021032/94‑1 (MQ=60)
                                                                               CTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCA                >  SRR4302533.2554107/1‑94 (MQ=60)
                                                                               CTAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCA                >  SRR4302533.5056938/1‑94 (MQ=60)
                                                                                TAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAA               <  SRR4302533.493678/94‑1 (MQ=60)
                                                                                TAATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAA               >  SRR4302533.1943731/1‑94 (MQ=60)
                                                                                 AATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAAC              >  SRR4302533.1972988/1‑94 (MQ=60)
                                                                                  ATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACC             >  SRR4302533.2588102/1‑94 (MQ=60)
                                                                                  ATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACC             >  SRR4302533.1863587/1‑94 (MQ=60)
                                                                                  ATTAACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACC             >  SRR4302533.2709383/1‑94 (MQ=60)
                                                                                     AACATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGG          <  SRR4302533.3827180/94‑1 (MQ=60)
                                                                                       CATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGAT        <  SRR4302533.5399351/94‑1 (MQ=60)
                                                                                       CATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGAT        <  SRR4302533.1579060/94‑1 (MQ=60)
                                                                                       CATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGAT        >  SRR4302533.1725632/1‑94 (MQ=60)
                                                                                        ATCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATT       >  SRR4302533.2145008/1‑94 (MQ=60)
                                                                                         TCAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTT      <  SRR4302533.6039937/94‑1 (MQ=60)
                                                                                          CAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTA     >  SRR4302533.1844500/1‑94 (MQ=60)
                                                                                          CAGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTA     <  SRR4302533.2821724/94‑1 (MQ=60)
                                                                                           AGCGTAACAGTGCGGATTCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTAC    >  SRR4302533.2297226/1‑94 (MQ=60)
                                                                                           AGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTAC    <  SRR4302533.5437344/94‑1 (MQ=60)
                                                                                           AGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTAC    <  SRR4302533.4417915/94‑1 (MQ=60)
                                                                                           AGCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTAC    >  SRR4302533.4716382/1‑94 (MQ=60)
                                                                                            GCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACA   <  SRR4302533.95226/94‑1 (MQ=60)
                                                                                            GCGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACA   >  SRR4302533.2026130/1‑94 (MQ=60)
                                                                                             CGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCCACCGGGATTTACAC  >  SRR4302533.2854870/1‑94 (MQ=60)
                                                                                             |                                                                                             
CTTTGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGTGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACAC  >  NC_000913/3705371‑3705557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑