Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,725,180	G→A	I70I (ATC→ATT)	yiaB ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,725,180	0	G	A	100.0%	1002.5 / NA	266	I70I (ATC→ATT)	yiaB	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (108/158); total (108/158)

Only 100 of 266 total aligned reads displayed.

GGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAG  >  NC_000913/3725090‑3725269

gggATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAat                                                                                          <  1:3542129/93‑1 (MQ=255)

 ggATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAata                                                                                         <  2:2327221/93‑1 (MQ=255)

  gATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAatat                                                                                        <  1:1791309/93‑1 (MQ=255)

   aTAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATg                                                                                       <  1:1127594/93‑1 (MQ=255)

    tAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATgg                                                                                      >  1:1405667/1‑93 (MQ=255)

    tAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATgg                                                                                      <  2:1528657/93‑1 (MQ=255)

      gATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGt                                                                                    <  2:36598/93‑1 (MQ=255)

       aTCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑a                                                                                  <  2:3285809/93‑1 (MQ=255)

          aCCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑aaaa                                                                               >  1:277458/1‑93 (MQ=255)

           ccATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑aaaaa                                                                              <  2:2229856/93‑1 (MQ=255)

           ccATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑aaaaa                                                                              <  1:6022118/93‑1 (MQ=255)

             aTTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑aaaaaaa                                                                            <  2:4016213/93‑1 (MQ=255)

              tttCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAat                                                                           >  2:4961693/1‑93 (MQ=255)

                tCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAatca                                                                         <  2:3542487/93‑1 (MQ=255)

                 cATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAatcat                                                                        >  2:2183861/1‑93 (MQ=255)

                 cATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAatcat                                                                        >  2:1322757/1‑93 (MQ=255)

                 cATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAatcat                                                                        >  1:4090442/1‑93 (MQ=255)

                  aTAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAatcatc                                                                       >  1:1017270/1‑93 (MQ=255)

                  aTAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAatcatc                                                                       >  1:3411563/1‑93 (MQ=255)

                   tAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATcc                                                                      <  2:2572999/93‑1 (MQ=255)

                   tAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATcc                                                                      >  2:941487/1‑93 (MQ=255)

                    aaGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCa                                                                     <  1:6091765/93‑1 (MQ=255)

                    aaGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCa                                                                     <  1:6263480/93‑1 (MQ=255)

                     aGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAg                                                                    <  1:5534381/93‑1 (MQ=255)

                      gTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGt                                                                   <  1:2113171/93‑1 (MQ=255)

                      gTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGt                                                                   <  2:5446044/93‑1 (MQ=255)

                      gTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGt                                                                   <  2:3750303/93‑1 (MQ=255)

                      gTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGt                                                                   >  2:2494100/1‑93 (MQ=255)

                       tATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGtt                                                                  <  2:4192023/93‑1 (MQ=255)

                       tATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGtt                                                                  >  1:4662899/1‑93 (MQ=255)

                         ttGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGc                                                                >  2:5299700/1‑93 (MQ=255)

                         ttGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGc                                                                >  1:2689650/1‑93 (MQ=255)

                           gATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGccc                                                              >  2:2374304/1‑93 (MQ=255)

                               ggTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCTAGTTGCCCGAGt                                                          >  2:4205054/1‑93 (MQ=255)

                               ggTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGt                                                          >  2:3336205/1‑93 (MQ=255)

                                gTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGtt                                                         <  1:3616096/93‑1 (MQ=255)

                                 tGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGttt                                                        >  1:906583/1‑93 (MQ=255)

                                 tGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGttt                                                        <  2:3161998/93‑1 (MQ=255)

                                  gCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGtttt                                                       >  1:3012892/1‑93 (MQ=255)

                                  gCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGtttt                                                       <  1:4953227/93‑1 (MQ=255)

                                    gTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTc                                                     >  1:1677399/1‑93 (MQ=255)

                                    gTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTc                                                     <  1:348332/93‑1 (MQ=255)

                                     tttAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCt                                                    >  1:2241662/1‑93 (MQ=255)

                                        aaaaCACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTgcg                                                 <  2:5056338/93‑1 (MQ=255)

                                          aaCACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGcgcg                                               <  1:1555748/93‑1 (MQ=255)

                                           acacCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGa                                              <  1:5388865/93‑1 (MQ=255)

                                           acacCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGa                                              <  1:4414344/93‑1 (MQ=255)

                                           acacCGATAAACAAGAGACCGATAGTGATTAAAGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGa                                              >  2:6030615/1‑93 (MQ=255)

                                            ttgcGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGaa                                             >  2:2942533/4‑93 (MQ=255)

                                             acCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGG‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAg                                            >  1:1255456/1‑93 (MQ=255)

                                                gATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGata                                         <  1:4338795/93‑1 (MQ=255)

                                                  tAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATg                                       >  2:1182192/1‑93 (MQ=255)

                                                   aaaCAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGc                                      <  2:1965080/93‑1 (MQ=255)

                                                    aaCAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCa                                     <  1:5626036/93‑1 (MQ=255)

                                                     aCAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCa                                     >  1:5141303/1‑93 (MQ=255)

                                                     aCAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCAt                                    <  2:3855147/93‑1 (MQ=255)

                                                     aCAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCAt                                    <  2:2193425/93‑1 (MQ=255)

                                                     aCAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCAt                                    <  1:2602818/93‑1 (MQ=255)

                                                     aCAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCAt                                    <  1:3754637/93‑1 (MQ=255)

                                                     aCAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCAt                                    <  1:2370816/93‑1 (MQ=255)

                                                      cAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATa                                   <  2:5329905/93‑1 (MQ=255)

                                                      cAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATa                                   <  2:5929029/93‑1 (MQ=255)

                                                       aaGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAg                                  >  1:4620639/1‑93 (MQ=255)

                                                         gagaCCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGtt                                <  2:2045829/93‑1 (MQ=255)

                                                         gagaCCGATAGTGATTAACGCAACTAACTGGCAAATATGGGG‑AAAAAAATCATCCAGTTGCCCGAGGTTTTCTGCGCGAAGATATGCATAGtt                                >  2:5836316/1‑93 (MQ=255)

                                                           gaCCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGc                              <  2:67623/93‑1 (MQ=255)

                                                           gaCCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGc                              >  2:459681/1‑93 (MQ=255)

                                                              cGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCaa                           <  2:4519676/93‑1 (MQ=255)

                                                              cGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCaa                           <  1:3672767/93‑1 (MQ=255)

                                                               gATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTCTTTCTGCGCGAAGATATGCATAGTTGCCaaa                          >  2:318624/1‑93 (MQ=255)

                                                                aTAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCaaaa                         <  2:2700239/93‑1 (MQ=255)

                                                                aTAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCaaaa                         >  2:1756010/1‑93 (MQ=255)

                                                                aTAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCaaaa                         <  1:5260141/93‑1 (MQ=255)

                                                                aTAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCaaaa                         >  1:4482073/1‑93 (MQ=255)

                                                                 tAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAg                        <  1:1347293/93‑1 (MQ=255)

                                                                 tAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAg                        <  2:4720283/93‑1 (MQ=255)

                                                                 tAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAg                        >  2:3430472/1‑93 (MQ=255)

                                                                 tAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAg                        <  1:3189260/93‑1 (MQ=255)

                                                                  aGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGt                       <  1:5734033/93‑1 (MQ=255)

                                                                   gTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGtt                      <  2:4803548/93‑1 (MQ=255)

                                                                     gATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGc                    >  2:6269063/1‑93 (MQ=255)

                                                                        tAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGt                 <  1:1271607/93‑1 (MQ=255)

                                                                        tAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGt                 <  2:1684030/93‑1 (MQ=255)

                                                                         aaCGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTc                >  1:84287/1‑93 (MQ=255)

                                                                           cGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCAt              <  2:1008512/93‑1 (MQ=255)

                                                                              aactaactGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTaa           <  2:5556356/93‑1 (MQ=255)

                                                                              aactaactGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTaa           >  2:5637976/1‑93 (MQ=255)

                                                                              aactaactGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTaa           <  1:2954321/93‑1 (MQ=255)

                                                                               actaactGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAac          <  1:5049530/93‑1 (MQ=255)

                                                                                ctaactGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAaca         >  1:4802079/1‑93 (MQ=255)

                                                                                 taactGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAacac        >  1:4557348/1‑93 (MQ=255)

                                                                                  aactGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACg       >  1:974692/1‑93 (MQ=255)

                                                                                   actGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGc      <  1:3069864/93‑1 (MQ=255)

                                                                                   actGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGc      <  1:6172572/93‑1 (MQ=255)

                                                                                   actGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGc      <  2:1576488/93‑1 (MQ=255)

                                                                                   actGACAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGc      <  2:2832875/93‑1 (MQ=255)

                                                                                    ctGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGcc     >  2:4387321/1‑93 (MQ=255)

                                                                                      ggCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCaa   >  1:710498/1‑93 (MQ=255)

                                                                                      ggCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCaa   <  2:2295122/93‑1 (MQ=255)

                                                                                       gCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAg  <  2:5963626/93‑1 (MQ=255)

GGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAG  >  NC_000913/3725090‑3725269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAGAAA  >  NC_000913/3725087‑3725272

GATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAA                                                                                               >  SRR4302533.3975922/1‑94 (MQ=60)

  TGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAAT                                                                                             <  SRR4302533.2687882/94‑1 (MQ=60)

  TGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAAT                                                                                             <  SRR4302533.5050148/94‑1 (MQ=60)

   GGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATA                                                                                            <  SRR4302533.3475045/94‑1 (MQ=60)

   GGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATA                                                                                            <  SRR4302533.3563957/94‑1 (MQ=60)

   GGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATA                                                                                            >  SRR4302533.1398258/1‑94 (MQ=60)

     GATATATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATG                                                                                          <  SRR4302533.890555/94‑1 (MQ=60)

     GATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATG                                                                                          <  SRR4302533.1802201/94‑1 (MQ=60)

     GATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATG                                                                                          >  SRR4302533.3605179/1‑94 (MQ=60)

     GATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATG                                                                                          <  SRR4302533.1306423/94‑1 (MQ=60)

      ATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGG                                                                                         <  SRR4302533.4841749/94‑1 (MQ=60)

      ATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGG                                                                                         >  SRR4302533.1414170/1‑94 (MQ=60)

      ATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGG                                                                                         <  SRR4302533.4369798/94‑1 (MQ=60)

      ATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGG                                                                                         <  SRR4302533.1134294/94‑1 (MQ=60)

       TAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGG                                                                                        >  SRR4302533.576440/1‑94 (MQ=60)

       TAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGG                                                                                        <  SRR4302533.6215595/94‑1 (MQ=60)

        AGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT                                                                                       <  SRR4302533.3989749/94‑1 (MQ=60)

        AGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT                                                                                       <  SRR4302533.4996599/94‑1 (MQ=60)

        AGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT                                                                                       >  SRR4302533.4510752/1‑94 (MQ=60)

            CACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAA                                                                                  >  SRR4302533.279152/1‑94 (MQ=60)

              CCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAA                                                                                >  SRR4302533.4649735/1‑94 (MQ=60)

              CCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAA                                                                                <  SRR4302533.6058614/94‑1 (MQ=60)

              CCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAA                                                                                >  SRR4302533.2244257/1‑94 (MQ=60)

               CATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGCGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAA                                                                               >  SRR4302533.619731/1‑94 (MQ=60)

                 TTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATC                                                                             >  SRR4302533.5755387/1‑94 (MQ=60)

                  TTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCA                                                                            >  SRR4302533.722775/1‑94 (MQ=60)

                   TCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCAT                                                                           <  SRR4302533.5016230/94‑1 (MQ=60)

                   TCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCAT                                                                           >  SRR4302533.4115343/1‑94 (MQ=60)

                    CATAAGTATTGATAGGTGCGTTTAAAACACTGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATC                                                                          >  SRR4302533.1368738/1‑94 (MQ=60)

                    CATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATC                                                                          >  SRR4302533.1023250/1‑94 (MQ=60)

                    CATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATC                                                                          >  SRR4302533.3432636/1‑94 (MQ=60)

                     ATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCC                                                                         <  SRR4302533.2084768/94‑1 (MQ=60)

                      TAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCA                                                                        <  SRR4302533.3050529/94‑1 (MQ=60)

                       AAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAG                                                                       <  SRR4302533.6128580/94‑1 (MQ=60)

                       AAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAG                                                                       <  SRR4302533.6300918/94‑1 (MQ=60)

                        AGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGT                                                                      <  SRR4302533.3523609/94‑1 (MQ=60)

                        AGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGT                                                                      <  SRR4302533.5567793/94‑1 (MQ=60)

                         GTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTT                                                                     >  SRR4302533.3885176/1‑94 (MQ=60)

                         GTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTT                                                                     <  SRR4302533.476589/94‑1 (MQ=60)

                         GTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTT                                                                     >  SRR4302533.4691154/1‑94 (MQ=60)

                         GTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTT                                                                     <  SRR4302533.4674017/94‑1 (MQ=60)

                         GTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTT                                                                     <  SRR4302533.2126205/94‑1 (MQ=60)

                         GTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTT                                                                     <  SRR4302533.2971644/94‑1 (MQ=60)

                          TATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTG                                                                    <  SRR4302533.3755055/94‑1 (MQ=60)

                          TATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTG                                                                    <  SRR4302533.1169956/94‑1 (MQ=60)

                          TATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTG                                                                    <  SRR4302533.2725564/94‑1 (MQ=60)

                           ATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGC                                                                   >  SRR4302533.2706139/1‑94 (MQ=60)

                            TTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCC                                                                  <  SRR4302533.5561194/94‑1 (MQ=60)

                            TTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCC                                                                  <  SRR4302533.4723106/94‑1 (MQ=60)

                             TGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCC                                                                 >  SRR4302533.1001917/1‑94 (MQ=60)

                             TGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCC                                                                 <  SRR4302533.3298886/94‑1 (MQ=60)

                                 AGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGT                                                             <  SRR4302533.3641454/94‑1 (MQ=60)

                                   GTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTT                                                           <  SRR4302533.3638341/94‑1 (MQ=60)

                                   GTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTT                                                           >  SRR4302533.911898/1‑94 (MQ=60)

                                    TGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTT                                                          >  SRR4302533.3031323/1‑94 (MQ=60)

                                     GCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTT                                                         <  SRR4302533.4983228/94‑1 (MQ=60)

                                      CGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTC                                                        >  SRR4302533.5134659/1‑94 (MQ=60)

                                      CGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTC                                                        >  SRR4302533.1687555/1‑94 (MQ=60)

                                      CGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTC                                                        >  SRR4302533.5472702/1‑94 (MQ=60)

                                       GTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCT                                                       <  SRR4302533.350459/94‑1 (MQ=60)

                                       GTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCT                                                       >  SRR4302533.2255518/1‑94 (MQ=60)

                                        TTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTG                                                      <  SRR4302533.1270232/94‑1 (MQ=60)

                                         TTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCAGCCAGTTGCCCGAGTTTTTCTGC                                                     <  SRR4302533.5324254/94‑1 (MQ=60)

                                          TAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCG                                                    <  SRR4302533.2978624/94‑1 (MQ=60)

                                          TAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCG                                                    >  SRR4302533.5332838/1‑94 (MQ=60)

                                          TAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCG                                                    <  SRR4302533.1330969/94‑1 (MQ=60)

                                          TAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCG                                                    <  SRR4302533.4571062/94‑1 (MQ=60)

                                           AAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGC                                                   >  SRR4302533.1066111/1‑94 (MQ=60)

                                           AAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGC                                                   >  SRR4302533.1577588/1‑94 (MQ=60)

                                           AAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGC                                                   <  SRR4302533.2206403/94‑1 (MQ=60)

                                            AAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCG                                                  >  SRR4302533.4221785/1‑94 (MQ=60)

                                             AACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGA                                                 <  SRR4302533.1565112/94‑1 (MQ=60)

                                              ACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAA                                                <  SRR4302533.4440999/94‑1 (MQ=60)

                                              ACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAA                                                <  SRR4302533.5421248/94‑1 (MQ=60)

                                               CACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGG‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAG                                               >  SRR4302533.1262961/1‑94 (MQ=60)

                                                 CCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGAT                                             >  SRR4302533.875881/1‑94 (MQ=60)

                                                 CCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGAT                                             <  SRR4302533.6149941/94‑1 (MQ=60)

                                                 CCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGAT                                             <  SRR4302533.6078068/94‑1 (MQ=60)

                                                 CCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGCGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGAT                                             <  SRR4302533.4466405/94‑1 (MQ=60)

                                                   GATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATAT                                           <  SRR4302533.368488/94‑1 (MQ=60)

                                                   GATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATAT                                           >  SRR4302533.4320963/1‑94 (MQ=60)

                                                   GATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATAT                                           <  SRR4302533.4364943/94‑1 (MQ=60)

                                                   GATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATAT                                           >  SRR4302533.2542376/1‑94 (MQ=60)

                                                   GATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATAT                                           <  SRR4302533.3287869/94‑1 (MQ=60)

                                                    ATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATG                                          <  SRR4302533.2366363/94‑1 (MQ=60)

                                                     TAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGC                                         <  SRR4302533.3485796/94‑1 (MQ=60)

                                                      AAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGACGATATGCA                                        >  SRR4302533.648898/1‑94 (MQ=60)

                                                      AAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCA                                        <  SRR4302533.173849/94‑1 (MQ=60)

                                                      AAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCA                                        <  SRR4302533.2642638/94‑1 (MQ=60)

                                                       AACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCA                                        >  SRR4302533.5172374/1‑94 (MQ=60)

                                                       AACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCAT                                       >  SRR4302533.917755/1‑94 (MQ=60)

                                                       AACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCAT                                       <  SRR4302533.5660052/94‑1 (MQ=60)

                                                        ACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATA                                      >  SRR4302533.6281431/1‑94 (MQ=60)

                                                        ACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATA                                      <  SRR4302533.3777649/94‑1 (MQ=60)

                                                        ACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATA                                      <  SRR4302533.2385481/94‑1 (MQ=60)

                                                        ACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATA                                      <  SRR4302533.2618811/94‑1 (MQ=60)

                                                         CAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAG                                     >  SRR4302533.4648644/1‑94 (MQ=60)

                                                          AAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGT                                    >  SRR4302533.5970904/1‑94 (MQ=60)

                                                            GAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTG                                  >  SRR4302533.1658228/1‑94 (MQ=60)

                                                              GACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCC                                >  SRR4302533.4610478/1‑94 (MQ=60)

                                                              GACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCC                                <  SRR4302533.5273252/94‑1 (MQ=60)

                                                                CCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGCTTTTCTGCGCGAAGATATGCATAGTTGCCAA                              >  SRR4302533.1688353/1‑94 (MQ=60)

                                                                 CGATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAA                             <  SRR4302533.3695338/94‑1 (MQ=60)

                                                                  GATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAA                            >  SRR4302533.4509212/1‑94 (MQ=60)

                                                                   ATAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAG                           <  SRR4302533.5291721/94‑1 (MQ=60)

                                                                    TAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGT                          <  SRR4302533.1355400/94‑1 (MQ=60)

                                                                    TAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGT                          >  SRR4302533.2293750/1‑94 (MQ=60)

                                                                    TAGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGT                          <  SRR4302533.3208877/94‑1 (MQ=60)

                                                                     AGTGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTT                         <  SRR4302533.5768650/94‑1 (MQ=60)

                                                                       TGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGC                       >  SRR4302533.1229092/1‑94 (MQ=60)

                                                                       TGATTAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGC                       <  SRR4302533.5937299/94‑1 (MQ=60)

                                                                           TAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTC                   >  SRR4302533.84824/1‑94 (MQ=60)

                                                                           TAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTC                   <  SRR4302533.1279214/94‑1 (MQ=60)

                                                                           TAACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTC                   <  SRR4302533.4494550/94‑1 (MQ=60)

                                                                             ACGCAACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCAT                 <  SRR4302533.2758938/94‑1 (MQ=60)

                                                                                 AACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAAC             <  SRR4302533.2680075/94‑1 (MQ=60)

                                                                                 AACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAAC             <  SRR4302533.2972389/94‑1 (MQ=60)

                                                                                 AACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAAC             >  SRR4302533.3007426/1‑94 (MQ=60)

                                                                                  ACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACA            >  SRR4302533.4831166/1‑94 (MQ=60)

                                                                                  ACTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACA            <  SRR4302533.5080073/94‑1 (MQ=60)

                                                                                   CTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACAC           >  SRR4302533.4584985/1‑94 (MQ=60)

                                                                                   CTAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACAC           >  SRR4302533.1459582/1‑94 (MQ=60)

                                                                                    TAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACG          >  SRR4302533.980413/1‑94 (MQ=60)

                                                                                    TAACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACG          <  SRR4302533.3086493/94‑1 (MQ=60)

                                                                                      ACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCC        <  SRR4302533.6209663/94‑1 (MQ=60)

                                                                                      ACTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCC        <  SRR4302533.3088710/94‑1 (MQ=60)

                                                                                       CTGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCA       >  SRR4302533.5137054/1‑94 (MQ=60)

                                                                                        TGGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAA      >  SRR4302533.714694/1‑94 (MQ=60)

                                                                                         GGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAG     <  SRR4302533.983395/94‑1 (MQ=60)

                                                                                         GGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAG     >  SRR4302533.3605713/1‑94 (MQ=60)

                                                                                         GGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAG     <  SRR4302533.3161338/94‑1 (MQ=60)

                                                                                         GGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAG     >  SRR4302533.760002/1‑94 (MQ=60)

                                                                                         GGCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAG     <  SRR4302533.5649570/94‑1 (MQ=60)

                                                                                          GCAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAGA    >  SRR4302533.1212153/1‑94 (MQ=60)

                                                                                           CAAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAGAA   <  SRR4302533.2400533/94‑1 (MQ=60)

                                                                                            AAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAGACA  >  SRR4302533.2062212/1‑94 (MQ=60)

                                                                                            AAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAGAAA  <  SRR4302533.2444389/94‑1 (MQ=60)

                                                                                            AAATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAGAAA  <  SRR4302533.5974600/94‑1 (MQ=60)

GATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGGGT‑AAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAGAAA  >  NC_000913/3725087‑3725272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`