Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,740,514	T→C	R51R (CGT→CGC)	yiaK →	putative dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,740,514	0	T	C	100.0%	776.3 / NA	239	R51R (CGT→CGC)	yiaK	putative dehydrogenase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (123/116); total (123/116)

Only 100 of 242 total aligned reads displayed.

TGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGTTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGC  >  NC_000913/3740424‑3740603

tGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGctt                                                                                         <  1:4372705/93‑1 (MQ=255)

tGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGctt                                                                                         >  2:3154886/1‑93 (MQ=255)

  aCAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCttca                                                                                       <  1:4087844/93‑1 (MQ=255)

   cAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCttcat                                                                                      <  2:4683258/93‑1 (MQ=255)

    aGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCttcatt                                                                                     >  1:6281714/1‑93 (MQ=255)

    aGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCttcatt                                                                                     >  2:4107126/1‑93 (MQ=255)

     gCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCttcattc                                                                                    <  1:716204/93‑1 (MQ=255)

     gCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCttcattc                                                                                    <  1:4482887/93‑1 (MQ=255)

        aaaCGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTcaac                                                                                 >  2:2477276/1‑93 (MQ=255)

         aaCGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTcaaca                                                                                >  2:5137289/1‑93 (MQ=255)

          aCGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTcaacaa                                                                               <  2:1872945/93‑1 (MQ=255)

           cGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCaacaac                                                                              <  1:1732156/93‑1 (MQ=255)

           cGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCaacaac                                                                              <  1:1856546/93‑1 (MQ=255)

            ggCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACt                                                                             >  2:889843/1‑93 (MQ=255)

            ggCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACt                                                                             >  1:2610007/1‑93 (MQ=255)

              cTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTgg                                                                           >  1:5335751/1‑93 (MQ=255)

              cTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTgg                                                                           >  1:1771111/1‑93 (MQ=255)

              cTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTgg                                                                           <  1:1973727/93‑1 (MQ=255)

                 aCGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGaaa                                                                        >  1:1165614/1‑93 (MQ=255)

                    ccTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACg                                                                     >  2:4327607/1‑93 (MQ=255)

                    ccTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACg                                                                     <  1:1893479/93‑1 (MQ=255)

                    ccTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACg                                                                     >  2:4027597/1‑93 (MQ=255)

                      tgtgCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGc                                                                   <  2:2517291/93‑1 (MQ=255)

                      tgtgCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGc                                                                   <  2:2212818/93‑1 (MQ=255)

                       gtgCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCg                                                                  >  1:3828664/1‑93 (MQ=255)

                       gtgCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCg                                                                  >  1:4254049/1‑93 (MQ=255)

                       gtgCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCg                                                                  >  2:4967369/1‑93 (MQ=255)

                       gtgCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCg                                                                  >  2:545039/1‑93 (MQ=255)

                        tgCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGa                                                                 <  1:4819092/93‑1 (MQ=255)

                         gCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGat                                                                >  1:3302407/1‑93 (MQ=255)

                          cAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGata                                                               <  2:1671434/93‑1 (MQ=255)

                          cAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGata                                                               <  1:5000991/93‑1 (MQ=255)

                          cAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGata                                                               <  2:3014389/93‑1 (MQ=255)

                           agagATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGatat                                                              >  2:4884139/1‑93 (MQ=255)

                           agagATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGatat                                                              <  1:3510757/93‑1 (MQ=255)

                           agagATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGatat                                                              >  2:1144001/1‑93 (MQ=255)

                            gagaTGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATc                                                             >  1:520552/1‑93 (MQ=255)

                            gagaTGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATc                                                             >  1:2953101/1‑93 (MQ=255)

                             agaTGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCa                                                            <  2:6285394/93‑1 (MQ=255)

                               aTGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCAtt                                                          <  1:2276558/93‑1 (MQ=255)

                                tGTTTGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTc                                                         >  2:5384349/1‑93 (MQ=255)

                                tGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTc                                                         <  1:1615650/93‑1 (MQ=255)

                                tGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTc                                                         <  2:272000/93‑1 (MQ=255)

                                tGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTc                                                         >  1:3076477/1‑93 (MQ=255)

                                tGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTc                                                         <  1:6101813/93‑1 (MQ=255)

                                 gTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTcc                                                        <  1:108185/93‑1 (MQ=255)

                                 gTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTcc                                                        >  1:5700341/1‑93 (MQ=255)

                                  ttCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCt                                                       <  1:2039195/93‑1 (MQ=255)

                                    cGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGa                                                     <  1:4949468/93‑1 (MQ=255)

                                    cGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGa                                                     <  1:5406957/93‑1 (MQ=255)

                                    cGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGa                                                     <  1:1185699/93‑1 (MQ=255)

                                     gCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGAt                                                    >  1:4621452/1‑93 (MQ=255)

                                      cccGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATg                                                   >  1:808233/1‑93 (MQ=255)

                                      cccGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATg                                                   >  2:4826121/1‑93 (MQ=255)

                                       ccGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGc                                                  <  1:453425/93‑1 (MQ=255)

                                        cGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCAATCCTCATgtc                                                 >  2:2642188/1‑91 (MQ=255)

                                         gCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGccc                                                <  2:1438398/93‑1 (MQ=255)

                                             caccGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGcccaacc                                            <  1:5912879/93‑1 (MQ=255)

                                               ccGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGcccaaccca                                          >  1:3168998/1‑93 (MQ=255)

                                                 gAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCaaa                                        >  1:2382170/1‑93 (MQ=255)

                                                   aTCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACg                                      >  2:4076696/1‑93 (MQ=255)

                                                   aTCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACg                                      >  1:5432789/1‑93 (MQ=255)

                                                    tCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGt                                     >  2:4127048/1‑93 (MQ=255)

                                                      cGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGtat                                   <  1:4730937/93‑1 (MQ=255)

                                                      cGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGtat                                   <  2:1570432/93‑1 (MQ=255)

                                                      cGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGtat                                   <  2:2770575/93‑1 (MQ=255)

                                                       ggCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGtata                                  <  2:3747820/93‑1 (MQ=255)

                                                        gCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATaa                                 <  1:2554570/93‑1 (MQ=255)

                                                           tttATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCa                              <  2:5860784/93‑1 (MQ=255)

                                                           tttATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCa                              >  2:101674/1‑93 (MQ=255)

                                                           tttATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCa                              >  1:35593/1‑93 (MQ=255)

                                                             tATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGc                            <  2:2023868/93‑1 (MQ=255)

                                                             tATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGc                            <  2:2785075/93‑1 (MQ=255)

                                                              aTTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGcc                           >  1:1041774/1‑93 (MQ=255)

                                                                tctcACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCtg                         >  2:748618/1‑92 (MQ=255)

                                                                         gTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAAtt                <  1:3696178/93‑1 (MQ=255)

                                                                          ttAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTg               >  1:5596378/1‑93 (MQ=255)

                                                                            aaTCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGaa             <  1:999244/93‑1 (MQ=255)

                                                                            aaTCGTTTACCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTACAACCAGCCTCGGCGCAATTGaa             <  2:5283741/93‑1 (MQ=255)

                                                                             aTCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAATCAGCCTCGGCGCAATTGAAc            >  2:601650/1‑93 (MQ=255)

                                                                             aTCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAAc            <  1:3866702/93‑1 (MQ=255)

                                                                              tCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAAACAGCCTCGGCGCAATTGAACa           >  1:2931139/1‑93 (MQ=255)

                                                                               cGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAg          <  2:656189/93‑1 (MQ=255)

                                                                               cGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCAGCGCAATTTAACAg          >  2:3426227/1‑93 (MQ=255)

                                                                                gTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGt         <  2:3984413/93‑1 (MQ=255)

                                                                                gTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGt         <  2:4194599/93‑1 (MQ=255)

                                                                                 tttCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTg        >  2:2922719/1‑93 (MQ=255)

                                                                                 tttCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTg        <  1:4400089/93‑1 (MQ=255)

                                                                                 tttCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTg        <  2:5113146/93‑1 (MQ=255)

                                                                                 tttCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTg        <  2:2665405/93‑1 (MQ=255)

                                                                                  ttCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTgg       <  1:4605199/93‑1 (MQ=255)

                                                                                   tCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTggg      >  2:5709987/1‑93 (MQ=255)

                                                                                   tCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTggg      <  2:33151/93‑1 (MQ=255)

                                                                                    cccTCGCTTCATTCAATAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGa     >  1:1327342/1‑93 (MQ=255)

                                                                                     ccTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGAc    <  2:5596190/93‑1 (MQ=255)

                                                                                     ccTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGAc    >  2:5822736/1‑93 (MQ=255)

                                                                                      cTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCTCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACg   >  2:3553193/1‑93 (MQ=255)

                                                                                      cTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACg   >  2:4580078/1‑93 (MQ=255)

                                                                                       tCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGc  >  1:2185835/1‑93 (MQ=255)

                                                                                       tCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGc  >  1:44457/1‑93 (MQ=255)

TGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGTTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGC  >  NC_000913/3740424‑3740603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGTTGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGTTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGCCCAG  >  NC_000913/3740421‑3740607

CGTTGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGC                                                                                               >  SRR4302533.11404/1‑94 (MQ=60)

CGTTGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGC                                                                                               >  SRR4302533.668500/1‑94 (MQ=60)

 GTTGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCT                                                                                              >  SRR4302533.6153548/1‑94 (MQ=60)

 GTTGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCT                                                                                              >  SRR4302533.6284531/1‑94 (MQ=60)

 GTTGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCT                                                                                              >  SRR4302533.3633616/1‑94 (MQ=60)

 GTTGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCT                                                                                              >  SRR4302533.1431851/1‑94 (MQ=60)

   TGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTC                                                                                            >  SRR4302533.4561856/1‑94 (MQ=60)

   TGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTC                                                                                            <  SRR4302533.4399099/94‑1 (MQ=60)

    GACAGCGAAACGGCTGACGCCTGTGCAGAGATGGTCGCCCGCACCACCGCATCCGGCGTTTATTCTCACGGCGTTAATTGTTTCCCTCGCTTCA                                                                                           >  SRR4302533.4965397/1‑94 (MQ=60)

     ACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCAT                                                                                          <  SRR4302533.4112729/94‑1 (MQ=60)

     ACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCAT                                                                                          <  SRR4302533.3532577/94‑1 (MQ=60)

      CAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATT                                                                                         <  SRR4302533.6196439/94‑1 (MQ=60)

      CAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATT                                                                                         >  SRR4302533.6319205/1‑94 (MQ=60)

        GCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCA                                                                                       <  SRR4302533.4510035/94‑1 (MQ=60)

        GCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCA                                                                                       <  SRR4302533.720427/94‑1 (MQ=60)

            AACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAA                                                                                   <  SRR4302533.243929/94‑1 (MQ=60)

              CGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACT                                                                                 <  SRR4302533.4434649/94‑1 (MQ=60)

              CGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACT                                                                                 <  SRR4302533.1742657/94‑1 (MQ=60)

              CGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACT                                                                                 >  SRR4302533.3602746/1‑94 (MQ=60)

              CGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACT                                                                                 <  SRR4302533.1867869/94‑1 (MQ=60)

              CGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACT                                                                                 >  SRR4302533.2626030/1‑94 (MQ=60)

              CGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACT                                                                                 <  SRR4302533.626337/94‑1 (MQ=60)

               GGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTG                                                                                >  SRR4302533.2329906/1‑94 (MQ=60)

                GCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGG                                                                               >  SRR4302533.1781893/1‑94 (MQ=60)

                GCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGG                                                                               >  SRR4302533.5367734/1‑94 (MQ=60)

                GCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGG                                                                               <  SRR4302533.2652125/94‑1 (MQ=60)

                 CTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGA                                                                              <  SRR4302533.1985813/94‑1 (MQ=60)

                 CTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGA                                                                              <  SRR4302533.4452958/94‑1 (MQ=60)

                  TGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAA                                                                             <  SRR4302533.1369866/94‑1 (MQ=60)

                   GACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAA                                                                            >  SRR4302533.2000200/1‑94 (MQ=60)

                   GACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAA                                                                            <  SRR4302533.5421268/94‑1 (MQ=60)

                   GACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAA                                                                            >  SRR4302533.1172602/1‑94 (MQ=60)

                    ACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAA                                                                           >  SRR4302533.2567545/1‑94 (MQ=60)

                       CCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGG                                                                        <  SRR4302533.1905039/94‑1 (MQ=60)

                       CCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGG                                                                        >  SRR4302533.1664026/1‑94 (MQ=60)

                        CTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGC                                                                       >  SRR4302533.2740200/1‑94 (MQ=60)

                        CTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGC                                                                       <  SRR4302533.5670649/94‑1 (MQ=60)

                         TGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCG                                                                      <  SRR4302533.5783123/94‑1 (MQ=60)

                         TGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCG                                                                      >  SRR4302533.3852073/1‑94 (MQ=60)

                         TGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCG                                                                      >  SRR4302533.4279703/1‑94 (MQ=60)

                          GTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGA                                                                     <  SRR4302533.3086062/94‑1 (MQ=60)

                           TGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGAT                                                                    <  SRR4302533.4848298/94‑1 (MQ=60)

                           TGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGAT                                                                    >  SRR4302533.3322798/1‑94 (MQ=60)

                             CAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATAT                                                                  <  SRR4302533.5031305/94‑1 (MQ=60)

                             CAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATAT                                                                  >  SRR4302533.1911623/1‑94 (MQ=60)

                              AGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATC                                                                 >  SRR4302533.523640/1‑94 (MQ=60)

                              AGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATC                                                                 >  SRR4302533.1173817/1‑94 (MQ=60)

                              AGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATC                                                                 >  SRR4302533.2971159/1‑94 (MQ=60)

                              AGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATC                                                                 <  SRR4302533.3532399/94‑1 (MQ=60)

                              AGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATC                                                                 >  SRR4302533.185467/1‑94 (MQ=60)

                                AGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCAT                                                               <  SRR4302533.4505060/94‑1 (MQ=60)

                                AGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCAT                                                               >  SRR4302533.411687/1‑94 (MQ=60)

                                 GATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATT                                                              <  SRR4302533.2147499/94‑1 (MQ=60)

                                 GATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATT                                                              <  SRR4302533.435170/94‑1 (MQ=60)

                                  ATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTC                                                             <  SRR4302533.2290656/94‑1 (MQ=60)

                                  ATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTC                                                             >  SRR4302533.4649074/1‑94 (MQ=60)

                                  ATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTC                                                             >  SRR4302533.3095358/1‑94 (MQ=60)

                                  ATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTC                                                             >  SRR4302533.1930198/1‑94 (MQ=60)

                                   TGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCC                                                            <  SRR4302533.1625444/94‑1 (MQ=60)

                                   TGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCC                                                            >  SRR4302533.5734766/1‑94 (MQ=60)

                                   TGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCC                                                            <  SRR4302533.6138653/94‑1 (MQ=60)

                                    GTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCT                                                           >  SRR4302533.1833411/1‑94 (MQ=60)

                                    GTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCT                                                           <  SRR4302533.586884/94‑1 (MQ=60)

                                    GTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCT                                                           <  SRR4302533.108868/94‑1 (MQ=60)

                                     TTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTG                                                          <  SRR4302533.2051770/94‑1 (MQ=60)

                                       CGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGAT                                                        >  SRR4302533.4649461/1‑94 (MQ=60)

                                       CGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGAT                                                        <  SRR4302533.3479547/94‑1 (MQ=60)

                                       CGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGAT                                                        <  SRR4302533.5439449/94‑1 (MQ=60)

                                       CGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGAT                                                        <  SRR4302533.1192816/94‑1 (MQ=60)

                                       CGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGAT                                                        <  SRR4302533.4979445/94‑1 (MQ=60)

                                        GCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATG                                                       >  SRR4302533.812983/1‑94 (MQ=60)

                                          CCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCC                                                     <  SRR4302533.456136/94‑1 (MQ=60)

                                            GCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCA                                                   >  SRR4302533.1118748/1‑94 (MQ=60)

                                             CACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAA                                                  <  SRR4302533.4693197/94‑1 (MQ=60)

                                             CACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAA                                                  >  SRR4302533.3600234/1‑94 (MQ=60)

                                              ACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAGAACGGCGATATCATTCCTGATGCCCAAC                                                 >  SRR4302533.187663/1‑94 (MQ=60)

                                               CCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACC                                                >  SRR4302533.5018154/1‑94 (MQ=60)

                                               CCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACC                                                >  SRR4302533.3294262/1‑94 (MQ=60)

                                               CCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACC                                                >  SRR4302533.4590057/1‑94 (MQ=60)

                                                CACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCC                                               <  SRR4302533.5948610/94‑1 (MQ=60)

                                                 ACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCA                                              >  SRR4302533.3188500/1‑94 (MQ=60)

                                                   CGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAA                                            >  SRR4302533.2396901/1‑94 (MQ=60)

                                                     AATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACG                                          >  SRR4302533.5465509/1‑94 (MQ=60)

                                                     AATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACG                                          >  SRR4302533.4008673/1‑94 (MQ=60)

                                                     AATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACG                                          >  SRR4302533.4539622/1‑94 (MQ=60)

                                                        CCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTAT                                       >  SRR4302533.863694/1‑94 (MQ=60)

                                                         CGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTGAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATA                                      >  SRR4302533.3395766/1‑94 (MQ=60)

                                                         CGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATA                                      <  SRR4302533.4759619/94‑1 (MQ=60)

                                                          GGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAA                                     >  SRR4302533.384824/1‑94 (MQ=60)

                                                           GCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAAC                                    <  SRR4302533.2570285/94‑1 (MQ=60)

                                                             GTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCA                                  >  SRR4302533.800187/1‑94 (MQ=60)

                                                             GTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCA                                  >  SRR4302533.717158/1‑94 (MQ=60)

                                                             GTTTATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCA                                  >  SRR4302533.35832/1‑94 (MQ=60)

                                                                TATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCC                               >  SRR4302533.1047899/1‑94 (MQ=60)

                                                                TATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCC                               >  SRR4302533.1363205/1‑94 (MQ=60)

                                                                 ATTCTCACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCT                              >  SRR4302533.1048145/1‑94 (MQ=60)

                                                                      CACGGCGTTAATCGTTTCCCTCGCTTCATTGAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAAACAGCCTCGGCG                         >  SRR4302533.2954920/1‑94 (MQ=60)

                                                                      CACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGCATAACCAGCCTCGGCG                         >  SRR4302533.4805517/1‑94 (MQ=60)

                                                                       ACGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGC                        >  SRR4302533.3139914/1‑94 (MQ=60)

                                                                        CGGCGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCA                       >  SRR4302533.5059846/1‑94 (MQ=60)

                                                                           CGTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATT                    >  SRR4302533.5010748/1‑94 (MQ=60)

                                                                            GTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTG                   >  SRR4302533.4874326/1‑94 (MQ=60)

                                                                            GTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTG                   >  SRR4302533.4359341/1‑94 (MQ=60)

                                                                            GTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTG                   >  SRR4302533.5630191/1‑94 (MQ=60)

                                                                            GTTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTG                   <  SRR4302533.3718881/94‑1 (MQ=60)

                                                                             TTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGA                  <  SRR4302533.2265691/94‑1 (MQ=60)

                                                                             TTAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGA                  >  SRR4302533.5452112/1‑94 (MQ=60)

                                                                              TAATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAA                 >  SRR4302533.5308269/1‑94 (MQ=60)

                                                                               AATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAAC                <  SRR4302533.1005076/94‑1 (MQ=60)

                                                                               AATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAAC                >  SRR4302533.1191092/1‑94 (MQ=60)

                                                                               AATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAAC                <  SRR4302533.544977/94‑1 (MQ=60)

                                                                                ATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACA               <  SRR4302533.3890305/94‑1 (MQ=60)

                                                                                ATCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAAACAGCCTCGGCGCAATTGAACA               >  SRR4302533.2949066/1‑94 (MQ=60)

                                                                                 TCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAG              <  SRR4302533.4673976/94‑1 (MQ=60)

                                                                                 TCGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAG              <  SRR4302533.3179461/94‑1 (MQ=60)

                                                                                  CGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCcgcgccaattgacaac             >  SRR4302533.5474202/1‑78 (MQ=60)

                                                                                  CGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGT             <  SRR4302533.1281115/94‑1 (MQ=60)

                                                                                  CGTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGT             >  SRR4302533.52696/1‑94 (MQ=60)

                                                                                   GTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTG            <  SRR4302533.2619942/94‑1 (MQ=60)

                                                                                   GTTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTG            <  SRR4302533.3873533/94‑1 (MQ=60)

                                                                                    TTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGG           <  SRR4302533.4426656/94‑1 (MQ=60)

                                                                                    TTTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGG           <  SRR4302533.4417538/94‑1 (MQ=60)

                                                                                    TTACCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGG           <  SRR4302533.6110685/94‑1 (MQ=60)

                                                                                     TTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGG          >  SRR4302533.1774149/1‑94 (MQ=60)

                                                                                     TTCCCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGG          <  SRR4302533.4633098/94‑1 (MQ=60)

                                                                                      TCCCTCGCTTCATTCAATAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGA         >  SRR4302533.1335309/1‑94 (MQ=60)

                                                                                      TCCCTCGCTTCATTCAACAAATGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGA         >  SRR4302533.2177824/1‑94 (MQ=60)

                                                                                        CCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACG       <  SRR4302533.4062155/94‑1 (MQ=60)

                                                                                        CCTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACG       >  SRR4302533.774074/1‑94 (MQ=60)

                                                                                         CTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGC      >  SRR4302533.2199308/1‑94 (MQ=60)

                                                                                         CTCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGC      >  SRR4302533.44761/1‑94 (MQ=60)

                                                                                          TCGCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGCC     >  SRR4302533.6081807/1‑94 (MQ=60)

                                                                                            GCTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGCCCA   <  SRR4302533.674756/94‑1 (MQ=60)

                                                                                             CTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGCCCAG  >  SRR4302533.4372868/1‑94 (MQ=60)

                                                                                             CTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGCCCAG  >  SRR4302533.308225/1‑94 (MQ=60)

                                                                                             CTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGCCCAG  >  SRR4302533.2982626/1‑94 (MQ=60)

CGTTGACAGCGAAACGGCTGACGCCTGTGCAGAGATGTTCGCCCGCACCACCGAATCCGGCGTTTATTCTCACGGCGTTAATCGTTTCCCTCGTTTCATTCAACAACTGGAAAACGGCGATATCATTCCTGATGCCCAACCCAAACGTATAACCAGCCTCGGCGCAATTGAACAGTGGGACGCCCAG  >  NC_000913/3740421‑3740607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`