Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,749,710 |
T→C |
L30P (CTT→CCT) |
yiaU → |
putative transcriptional regulator LYSR‑type |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,749,710 | 0 | T | C | 100.0%
| 353.8
/ NA
| 108 | L30P (CTT→CCT) | yiaU | putative transcriptional regulator LYSR‑type |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (102/6); total (102/6) |
Only 100 of 111 total aligned reads displayed.
CGATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACTTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAG > NC_000913/3749620‑3749798
|
cGATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTg > 1:6121410/1‑93 (MQ=255)
gATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTgg > 2:236453/1‑93 (MQ=255)
gATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTgg > 1:1670395/1‑93 (MQ=255)
aTGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGc > 2:711123/1‑93 (MQ=255)
aTGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGc > 2:5283047/1‑93 (MQ=255)
aTGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGc > 1:631192/1‑93 (MQ=255)
tGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCa > 2:211081/1‑93 (MQ=255)
aCAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATc > 2:4399234/1‑93 (MQ=255)
aaaTTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGca > 2:3950108/1‑93 (MQ=255)
aaaTTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGca > 2:1466328/1‑93 (MQ=255)
aTTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGcaca > 1:185306/1‑93 (MQ=255)
aTTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGcaca > 1:5066735/1‑93 (MQ=255)
ttACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAg > 1:673415/1‑93 (MQ=255)
aCAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGc > 2:3106806/1‑93 (MQ=255)
aCAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGc > 1:1294476/1‑93 (MQ=255)
cAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGcc > 2:1941581/1‑93 (MQ=255)
aCTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCaa > 1:826747/1‑93 (MQ=255)
cTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAAc > 1:5800351/1‑93 (MQ=255)
cTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAAc > 2:1042920/1‑93 (MQ=255)
cTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAAc > 1:548934/1‑93 (MQ=255)
tAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACga > 1:2030119/1‑92 (MQ=255)
gTACCGGGCGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAg > 2:6159665/1‑93 (MQ=255)
gTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAg > 2:3548409/1‑93 (MQ=255)
tACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGc > 1:886921/1‑93 (MQ=255)
tACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGc > 1:3201887/1‑93 (MQ=255)
aCCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCa > 1:5905896/1‑93 (MQ=255)
aCCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCa > 2:2569358/1‑93 (MQ=255)
aCCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCa > 1:2122157/1‑93 (MQ=255)
ccGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAACCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCaa > 2:350173/1‑93 (MQ=255)
cGGGCGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGCCATCGCACAGGCCAACGACAGCaaa > 2:2238209/1‑93 (MQ=255)
cGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCaaa > 1:2053542/1‑93 (MQ=255)
cGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCaaa > 2:2006825/1‑93 (MQ=255)
gggAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAat > 1:2967768/1‑93 (MQ=255)
gggAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAat > 2:3258542/1‑93 (MQ=255)
ggAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAata > 2:5051293/1‑93 (MQ=255)
ggAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAata < 1:1628522/93‑1 (MQ=255)
gAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAatat > 1:3843822/1‑93 (MQ=255)
gAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAatat > 1:3589223/1‑93 (MQ=255)
aGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATc > 1:5788141/1‑93 (MQ=255)
aGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATc > 2:6024049/1‑93 (MQ=255)
gTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCt > 1:4181794/1‑93 (MQ=255)
ttAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCtt > 2:1641174/1‑93 (MQ=255)
ttAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCtt > 2:670018/1‑93 (MQ=255)
tAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTg > 1:622371/1‑93 (MQ=255)
aaaaaTTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGc > 2:6256292/1‑93 (MQ=255)
aTTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGAt > 1:1483790/1‑93 (MQ=255)
ttATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGAtt > 2:5483862/1‑93 (MQ=255)
tctcGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTg > 2:2574013/1‑93 (MQ=255)
tctcGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTg > 2:2965116/1‑93 (MQ=255)
tcGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCACATATCTTGCTGATTTTGaa > 2:6274681/1‑93 (MQ=255)
tcGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGaa > 1:2317862/1‑93 (MQ=255)
tcGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGaa > 1:2528166/1‑93 (MQ=255)
cGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAAt > 1:1606096/1‑93 (MQ=255)
gggaaTCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATc > 2:1030382/4‑93 (MQ=255)
ggTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGcaca < 2:2621731/57‑1 (MQ=255)
ggTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATc > 1:849701/1‑93 (MQ=255)
ggTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATc > 1:6031633/1‑93 (MQ=255)
tAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCaa > 1:5238990/1‑93 (MQ=255)
tAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCaa < 1:2163011/93‑1 (MQ=255)
aaTCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCaaa > 2:1572029/1‑93 (MQ=255)
aaTCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCaaa > 2:4327237/1‑93 (MQ=255)
aaTCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCaaa > 2:2329454/1‑93 (MQ=255)
aTCGCGCCCAGTAAAAATATCAGCCATGCCGCGACTGTACCTGGCACCGCACAGCCCAACGTCAGCAAATATCTTGCTGATTTTGAATCaaaa < 2:4686921/93‑1 (MQ=255)
tCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAg > 2:1504399/1‑93 (MQ=255)
tCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAg > 1:351342/1‑93 (MQ=255)
cTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTgg > 1:5168315/1‑93 (MQ=255)
tGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCCTCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTggg > 2:5132253/1‑93 (MQ=255)
gCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGt > 1:2995791/1‑93 (MQ=255)
gTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTaa > 1:5355640/1‑93 (MQ=255)
gTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTaa > 2:3534866/1‑93 (MQ=255)
aaaaTATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAg > 1:2105996/1‑93 (MQ=255)
aaaaTATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAg > 2:4785675/1‑93 (MQ=255)
tatCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCtt > 1:111783/1‑93 (MQ=255)
tatCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCtt < 1:5878116/93‑1 (MQ=255)
tatCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCtt > 1:2331845/1‑93 (MQ=255)
atCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCttt > 1:1286560/1‑93 (MQ=255)
atCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCttt > 1:2553263/1‑93 (MQ=255)
tCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTg > 1:838277/1‑93 (MQ=255)
tCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTg > 2:5584388/1‑93 (MQ=255)
aGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAACAGTCTTTGAc > 2:2584572/1‑93 (MQ=255)
gCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGAcc > 1:1017982/1‑93 (MQ=255)
gCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGAcc > 2:4419700/1‑93 (MQ=255)
gCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGAcc > 1:3513279/1‑93 (MQ=255)
ccATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCg < 1:6024049/93‑1 (MQ=255)
cATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGa > 2:3140862/1‑93 (MQ=255)
cATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGa > 2:1324627/1‑93 (MQ=255)
cATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGa > 2:4002610/1‑93 (MQ=255)
aTGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGaa > 2:1002145/1‑93 (MQ=255)
aTGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTCAATCAAAAGTGGGTTTAAAAGTCTTTGACCGaa > 2:718707/1‑93 (MQ=255)
gCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAacc < 2:2709111/93‑1 (MQ=255)
ccGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAacca > 2:2295953/1‑93 (MQ=255)
cgcgACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAaccac > 1:5669405/1‑93 (MQ=255)
gcgACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAaccacc > 1:5134930/1‑93 (MQ=255)
gACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCg > 1:4719748/1‑93 (MQ=255)
aCTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCgg > 2:4642446/1‑93 (MQ=255)
aCTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCgg > 1:1502183/1‑93 (MQ=255)
aCTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCgg > 2:3287742/1‑93 (MQ=255)
aCTGTACCTGGCATCGCACAGGCCAACGTCACCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCgg > 1:5673232/1‑93 (MQ=255)
aCTGGACCTGGCATCGCACAGGCCAACGGCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGGTTAAAAGTCTTTGACCGAACCACCCgg > 1:5074300/1‑93 (MQ=255)
gTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAg > 1:5849287/1‑93 (MQ=255)
|
CGATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACTTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAG > NC_000913/3749620‑3749798
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCGATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACTTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAGCTGAT > NC_000913/3749619‑3749803
|
GCGATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTG > SRR4302533.6158321/1‑94 (MQ=60)
CGATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGG > SRR4302533.1680490/1‑94 (MQ=60)
GATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGC > SRR4302533.5817403/1‑94 (MQ=60)
GATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGC > SRR4302533.634905/1‑94 (MQ=60)
AATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACA > SRR4302533.5097337/1‑94 (MQ=60)
AATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACA > SRR4302533.186456/1‑94 (MQ=60)
AATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACA > SRR4302533.1912060/1‑94 (MQ=60)
ATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAG > SRR4302533.677390/1‑94 (MQ=60)
TACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGC > SRR4302533.1302269/1‑94 (MQ=60)
AACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAA > SRR4302533.831595/1‑94 (MQ=60)
ACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAAC > SRR4302533.552190/1‑94 (MQ=60)
ACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAAC > SRR4302533.5835392/1‑94 (MQ=60)
TTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGA > SRR4302533.2042649/1‑94 (MQ=60)
GTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGC > SRR4302533.892127/1‑94 (MQ=60)
GTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGC > SRR4302533.3221592/1‑94 (MQ=60)
TACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCA > SRR4302533.2135239/1‑94 (MQ=60)
TACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCA > SRR4302533.5941561/1‑94 (MQ=60)
CCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAA > SRR4302533.2066212/1‑94 (MQ=60)
CGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAAT > SRR4302533.2985910/1‑94 (MQ=60)
GGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATAT > SRR4302533.3867300/1‑94 (MQ=60)
GGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATAT > SRR4302533.3611321/1‑94 (MQ=60)
GGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATAT < SRR4302533.1638386/94‑1 (MQ=60)
GAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATC > SRR4302533.5823111/1‑94 (MQ=60)
AGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCT > SRR4302533.4207121/1‑94 (MQ=60)
TTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTG > SRR4302533.626029/1‑94 (MQ=60)
AATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGAT > SRR4302533.4974656/1‑94 (MQ=60)
AATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGAT > SRR4302533.1492745/1‑94 (MQ=60)
CTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAA > SRR4302533.2543731/1‑94 (MQ=60)
CTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAA > SRR4302533.2332212/1‑94 (MQ=60)
TCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAAT > SRR4302533.1615819/1‑94 (MQ=60)
CGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGatacagcagatcggaagagcggttcagcaggaatg > SRR4302533.2637822/1‑59 (MQ=60)
CGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATC > SRR4302533.854674/1‑94 (MQ=60)
CGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATC > SRR4302533.6068188/1‑94 (MQ=60)
GTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAA > SRR4302533.5270489/1‑94 (MQ=60)
TAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAA < SRR4302533.2176322/94‑1 (MQ=60)
ATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAG > SRR4302533.353484/1‑94 (MQ=60)
GCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGG > SRR4302533.5199512/1‑94 (MQ=60)
TGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGT > SRR4302533.3014110/1‑94 (MQ=60)
AGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAA > SRR4302533.5387789/1‑94 (MQ=60)
GAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAG > SRR4302533.2118982/1‑94 (MQ=60)
ATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTT > SRR4302533.112489/1‑94 (MQ=60)
ATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTT > SRR4302533.2346282/1‑94 (MQ=60)
TATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTT > SRR4302533.1294300/1‑94 (MQ=60)
TATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTT < SRR4302533.5913646/94‑1 (MQ=60)
TATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTT > SRR4302533.2568974/1‑94 (MQ=60)
ATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTG > SRR4302533.843186/1‑94 (MQ=60)
AGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACC > SRR4302533.3534937/1‑94 (MQ=60)
AGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACC > SRR4302533.1023965/1‑94 (MQ=60)
CCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGA < SRR4302533.6060554/94‑1 (MQ=60)
CATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAA > SRR4302533.6291680/1‑94 (MQ=60)
CCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCAC > SRR4302533.5703649/1‑94 (MQ=60)
CGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACC > SRR4302533.5165953/1‑94 (MQ=60)
CGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCG > SRR4302533.4748367/1‑94 (MQ=60)
GACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGG > SRR4302533.1511238/1‑94 (MQ=60)
GACTGTACCTGGCATCGCACAGGCCAACGTCACCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGG > SRR4302533.5707494/1‑94 (MQ=60)
GACTGGACCTGGCATCGCACAGGCCAACGGCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGGTTAAAAGTCTTTGACCGAACCACCCGG > SRR4302533.5104973/1‑94 (MQ=60)
TGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAG > SRR4302533.5884653/1‑94 (MQ=60)
CTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAGCTGAT > SRR4302533.4065667/1‑94 (MQ=60)
CTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAGCTGAT < SRR4302533.2270170/94‑1 (MQ=60)
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GCGATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACTTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAGCTGAT > NC_000913/3749619‑3749803
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
