Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,755,517 T→C intergenic (‑63/+127) yiaY ← / ← selB putative oxidoreductase/selenocysteinyl‑tRNA‑specific translation factor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,755,5170TC100.0% 525.1 / NA 161intergenic (‑63/+127)yiaY/selBputative oxidoreductase/selenocysteinyl‑tRNA‑specific translation factor
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (8/153);  total (8/153)

Only 100 of 162 total aligned reads displayed.

AAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAATTT  >  NC_000913/3755427‑3755606
                                                                                          |                                                                                         
aaGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGa                                                                                         <  2:4210598/93‑1 (MQ=255)
aaGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGa                                                                                         <  2:728031/93‑1 (MQ=255)
aaGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGa                                                                                         <  1:4569132/93‑1 (MQ=255)
aaGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGa                                                                                         <  1:2145959/93‑1 (MQ=255)
aaGAAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGa                                                                                         <  2:5810920/93‑1 (MQ=255)
 aGGAATAAAGAACGTTGAAGCTGCCATAACACCCTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGAt                                                                                        <  1:5838958/93‑1 (MQ=255)
 aGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGAt                                                                                        <  2:658711/93‑1 (MQ=255)
 aGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGAt                                                                                        <  1:2407045/93‑1 (MQ=255)
  ggAATAAAGAAGGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATc                                                                                       <  1:528521/93‑1 (MQ=255)
  ggAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATc                                                                                       <  1:2715725/93‑1 (MQ=255)
    aaTAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAg                                                                                     <  1:3258912/93‑1 (MQ=255)
     aTAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGt                                                                                    <  2:731827/93‑1 (MQ=255)
     aTAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGt                                                                                    >  2:3846762/1‑93 (MQ=255)
     aTAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGt                                                                                    <  1:2241894/93‑1 (MQ=255)
      tAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGta                                                                                   >  2:3886046/1‑93 (MQ=255)
       aaaGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAATAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGtat                                                                                  <  1:3614392/93‑1 (MQ=255)
       aaaGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGtat                                                                                  <  2:4929348/93‑1 (MQ=255)
         aGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGtatta                                                                                <  2:4963161/93‑1 (MQ=255)
          gAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGtattat                                                                               <  1:3003043/93‑1 (MQ=255)
          gAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGtattat                                                                               <  2:4168366/93‑1 (MQ=255)
           aaCGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTattatt                                                                              <  1:385546/93‑1 (MQ=255)
           aaCGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTattatt                                                                              <  1:1026422/93‑1 (MQ=255)
           aaCGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTattatt                                                                              <  1:1016471/93‑1 (MQ=255)
           aaCGTTAAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTattatt                                                                              <  2:3348039/93‑1 (MQ=255)
            aCGTTGACGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGCTCAGTATTATTg                                                                             <  1:3406592/93‑1 (MQ=255)
             cGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGa                                                                            <  2:4374541/93‑1 (MQ=255)
             cGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGa                                                                            <  2:2490282/93‑1 (MQ=255)
             cGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGa                                                                            <  1:3630112/93‑1 (MQ=255)
               ttGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGAtt                                                                          <  1:6169883/93‑1 (MQ=255)
               ttGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGAtt                                                                          >  2:3757056/1‑93 (MQ=255)
               tggAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGAtt                                                                          <  2:5319743/91‑1 (MQ=255)
                tGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTa                                                                         <  2:1737868/93‑1 (MQ=255)
                tGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTa                                                                         <  1:2870261/93‑1 (MQ=255)
                tGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTa                                                                         <  1:533266/93‑1 (MQ=255)
                tGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTa                                                                         <  2:1098609/93‑1 (MQ=255)
                 gAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTAt                                                                        <  2:2660345/93‑1 (MQ=255)
                  aaGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATc                                                                       <  1:4354068/93‑1 (MQ=255)
                  aaGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATc                                                                       <  2:3554998/93‑1 (MQ=255)
                     cTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCaaa                                                                    <  1:2825115/93‑1 (MQ=255)
                      tGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCaaaa                                                                   <  1:1405213/93‑1 (MQ=255)
                          aTAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTaa                                                               <  2:669614/93‑1 (MQ=255)
                          aTAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTaa                                                               <  1:2388641/93‑1 (MQ=255)
                           tAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAAt                                                              <  2:1424463/93‑1 (MQ=255)
                           aaaCACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAAt                                                              <  2:4433591/92‑1 (MQ=255)
                            aaCACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATc                                                             <  1:1208123/93‑1 (MQ=255)
                             acacacTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCt                                                            <  2:1901849/93‑1 (MQ=255)
                               acacTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCtaa                                                          <  1:6252901/93‑1 (MQ=255)
                               acacTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCtaa                                                          <  1:5412723/93‑1 (MQ=255)
                               acacTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCtaa                                                          <  2:2322827/93‑1 (MQ=255)
                                cacTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCtaat                                                         <  2:2029145/93‑1 (MQ=255)
                                cacTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCtaat                                                         <  1:896984/93‑1 (MQ=255)
                                cacTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCtaat                                                         <  2:5682804/93‑1 (MQ=255)
                                 acTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCtaata                                                        <  1:933069/93‑1 (MQ=255)
                                  cTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCtaataa                                                       <  1:4978409/93‑1 (MQ=255)
                                   tCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATaaa                                                      >  2:1471408/1‑93 (MQ=255)
                                     cTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATaaaaa                                                    <  1:1999420/93‑1 (MQ=255)
                                     cTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATaaaaa                                                    <  2:554106/93‑1 (MQ=255)
                                        aaaGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGca                                                 <  2:1788803/93‑1 (MQ=255)
                                          aGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGcaca                                               <  1:681778/93‑1 (MQ=255)
                                          aGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGcaca                                               <  1:1730034/93‑1 (MQ=255)
                                           gtgtAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACAt                                              <  2:213277/93‑1 (MQ=255)
                                           gtgtAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACAt                                              >  1:2632354/1‑93 (MQ=255)
                                           gtgtAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACAt                                              <  1:2705721/93‑1 (MQ=255)
                                            tgtAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACAtt                                             <  2:689986/93‑1 (MQ=255)
                                            tgtAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACCATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACAtt                                             <  1:1615099/93‑1 (MQ=255)
                                               aaaaaaGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTa                                          <  2:6222623/93‑1 (MQ=255)
                                                aaaaaGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTAt                                         <  1:3473372/93‑1 (MQ=255)
                                                aaaaaGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTAt                                         <  1:4182787/93‑1 (MQ=255)
                                                  aaaGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTc                                       <  1:2004940/93‑1 (MQ=255)
                                                  aaaGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTc                                       <  2:4315648/93‑1 (MQ=255)
                                                   aaGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCa                                      <  1:3721933/93‑1 (MQ=255)
                                                     gggcgggcAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCAtt                                    <  1:4847406/93‑1 (MQ=255)
                                                         gggcAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAAc                                <  2:1467209/93‑1 (MQ=255)
                                                          ggcAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACa                               <  1:2568007/93‑1 (MQ=255)
                                                           gcAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACaa                              <  2:1348356/93‑1 (MQ=255)
                                                            cAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAAt                             <  2:4091166/93‑1 (MQ=255)
                                                              gCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAAtgt                           <  1:5747460/93‑1 (MQ=255)
                                                               cTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAAtgtg                          <  1:1561956/93‑1 (MQ=255)
                                                                 tACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCt                        <  1:4844158/93‑1 (MQ=255)
                                                                    tGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCtttt                     <  2:3757672/93‑1 (MQ=255)
                                                                    tGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCtttt                     <  1:6039405/93‑1 (MQ=255)
                                                                     gAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCttttt                    >  2:4799994/1‑93 (MQ=255)
                                                                      aGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCtttttt                   <  1:247171/93‑1 (MQ=255)
                                                                        gATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTa                 <  2:2331278/93‑1 (MQ=255)
                                                                         aTTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTaa                <  1:5637518/93‑1 (MQ=255)
                                                                          ttttCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTaaa               <  1:5089490/93‑1 (MQ=255)
                                                                          ttttCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTaaa               <  1:1461645/93‑1 (MQ=255)
                                                                             tCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTc            <  2:3119702/93‑1 (MQ=255)
                                                                             tCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTc            <  2:3895044/93‑1 (MQ=255)
                                                                              cATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCa           <  2:1406513/93‑1 (MQ=255)
                                                                                 tCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATaa        <  1:5040898/93‑1 (MQ=255)
                                                                                 tCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATaa        <  1:1129267/93‑1 (MQ=255)
                                                                                  cGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAg       <  2:2710188/93‑1 (MQ=255)
                                                                                  cGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAg       <  1:1471408/93‑1 (MQ=255)
                                                                                  cGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAg       <  2:1638362/93‑1 (MQ=255)
                                                                                   gAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGa      <  2:6115297/93‑1 (MQ=255)
                                                                                    aaaaTACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGaa     <  1:5907486/93‑1 (MQ=255)
                                                                                     aaaTACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAAt    <  1:5601917/93‑1 (MQ=255)
                                                                                      aaTACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAAtt   >  2:4761011/1‑93 (MQ=255)
                                                                                       atacGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAAttt  <  2:875466/93‑1 (MQ=255)
                                                                                          |                                                                                         
AAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAATTT  >  NC_000913/3755427‑3755606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAATTTTG  >  NC_000913/3755425‑3755608
                                                                                            |                                                                                           
AGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACG                                                                                            <  SRR4302533.2772945/94‑1 (MQ=60)
AGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACG                                                                                            <  SRR4302533.5459231/94‑1 (MQ=60)
AGAAGCAATAAAGACCGTGGAGGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACG                                                                                            <  SRR4302533.2891896/94‑1 (MQ=60)
 GAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGA                                                                                           <  SRR4302533.2262098/94‑1 (MQ=60)
  AAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGAT                                                                                          <  SRR4302533.2159176/94‑1 (MQ=60)
  AAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGAT                                                                                          <  SRR4302533.4596823/94‑1 (MQ=60)
   AGGAATAAAGAACGTTGAAGCTGCCATAACACCCTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATC                                                                                         <  SRR4302533.5874258/94‑1 (MQ=60)
   AGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATC                                                                                         <  SRR4302533.2421912/94‑1 (MQ=60)
    GGAATAAAGAAGGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCA                                                                                        <  SRR4302533.531665/94‑1 (MQ=60)
    GGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCA                                                                                        <  SRR4302533.531664/94‑1 (MQ=60)
    GGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCA                                                                                        <  SRR4302533.2732399/94‑1 (MQ=60)
     GAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAG                                                                                       <  SRR4302533.2595034/94‑1 (MQ=60)
      AATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGT                                                                                      <  SRR4302533.3279014/94‑1 (MQ=60)
      AATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGT                                                                                      <  SRR4302533.1273686/94‑1 (MQ=60)
       ATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTA                                                                                     <  SRR4302533.2255751/94‑1 (MQ=60)
       ATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTA                                                                                     <  SRR4302533.2548233/94‑1 (MQ=60)
        TAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTAT                                                                                    <  SRR4302533.2823096/94‑1 (MQ=60)
         AAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAATAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATT                                                                                   <  SRR4302533.3636631/94‑1 (MQ=60)
         AAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATT                                                                                   <  SRR4302533.3970679/94‑1 (MQ=60)
           AGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTAT                                                                                 <  SRR4302533.2421748/94‑1 (MQ=60)
           AGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTAT                                                                                 <  SRR4302533.6344199/94‑1 (MQ=60)
            GAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATT                                                                                <  SRR4302533.3021407/94‑1 (MQ=60)
             AACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTG                                                                               <  SRR4302533.387872/94‑1 (MQ=60)
             AACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTG                                                                               <  SRR4302533.1107551/94‑1 (MQ=60)
             AACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTG                                                                               <  SRR4302533.1022445/94‑1 (MQ=60)
             AACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTG                                                                               <  SRR4302533.1032453/94‑1 (MQ=60)
              ACGTTGACGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGCTCAGTATTATTGA                                                                              <  SRR4302533.3427632/94‑1 (MQ=60)
              ACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGA                                                                              <  SRR4302533.5775594/94‑1 (MQ=60)
               CGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGAT                                                                             <  SRR4302533.3652447/94‑1 (MQ=60)
                 TTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTA                                                                           <  SRR4302533.6206967/94‑1 (MQ=60)
                  TGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTAT                                                                          <  SRR4302533.536437/94‑1 (MQ=60)
                  TGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTAT                                                                          <  SRR4302533.2887922/94‑1 (MQ=60)
                    AAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCA                                                                        <  SRR4302533.4380347/94‑1 (MQ=60)
                     AGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAA                                                                       <  SRR4302533.1443022/94‑1 (MQ=60)
                     AGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAA                                                                       <  SRR4302533.4711087/94‑1 (MQ=60)
                       CTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAA                                                                     <  SRR4302533.2842500/94‑1 (MQ=60)
                        TGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAAT                                                                    <  SRR4302533.1413715/94‑1 (MQ=60)
                            ATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAAT                                                                <  SRR4302533.2403396/94‑1 (MQ=60)
                            ATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAAT                                                                <  SRR4302533.4979323/94‑1 (MQ=60)
                              AACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCT                                                              <  SRR4302533.1215376/94‑1 (MQ=60)
                                 ACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAAT                                                           <  SRR4302533.5445271/94‑1 (MQ=60)
                                 ACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAAT                                                           <  SRR4302533.6290302/94‑1 (MQ=60)
                                  CACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATA                                                          <  SRR4302533.2725720/94‑1 (MQ=60)
                                  CACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATA                                                          <  SRR4302533.902249/94‑1 (MQ=60)
                                   ACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAA                                                         <  SRR4302533.938546/94‑1 (MQ=60)
                                    CTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAA                                                        <  SRR4302533.5008596/94‑1 (MQ=60)
                                    CTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAA                                                        <  SRR4302533.4571985/94‑1 (MQ=60)
                                       CTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAG                                                     <  SRR4302533.2011724/94‑1 (MQ=60)
                                       CTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAG                                                     <  SRR4302533.5928603/94‑1 (MQ=60)
                                       CGGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAG                                                     <  SRR4302533.1526548/94‑1 (MQ=60)
                                            AGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACAT                                                <  SRR4302533.685810/94‑1 (MQ=60)
                                            AGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACAT                                                <  SRR4302533.3280087/94‑1 (MQ=60)
                                            AGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACAT                                                <  SRR4302533.1740522/94‑1 (MQ=60)
                                            AGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACAT                                                >  SRR4302533.2648534/1‑94 (MQ=60)
                                             GTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATT                                               <  SRR4302533.2722315/94‑1 (MQ=60)
                                              TGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACCATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTG                                              <  SRR4302533.1624892/94‑1 (MQ=60)
                                                  AAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATT                                          <  SRR4302533.3494804/94‑1 (MQ=60)
                                                  AAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATT                                          <  SRR4302533.4208118/94‑1 (MQ=60)
                                                    AAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCA                                        <  SRR4302533.2017288/94‑1 (MQ=60)
                                                    AAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCA                                        <  SRR4302533.3866492/94‑1 (MQ=60)
                                                     AAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCAT                                       <  SRR4302533.3744774/94‑1 (MQ=60)
                                                       GGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTA                                     <  SRR4302533.4876783/94‑1 (MQ=60)
                                                        GGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAA                                    <  SRR4302533.2989687/94‑1 (MQ=60)
                                                            GGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAA                                <  SRR4302533.2583810/94‑1 (MQ=60)
                                                            GGCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAA                                <  SRR4302533.562018/94‑1 (MQ=60)
                                                             GCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAAT                               <  SRR4302533.6036784/94‑1 (MQ=60)
                                                             GCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAAT                               <  SRR4302533.2242885/94‑1 (MQ=60)
                                                             GCAGCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAAT                               <  SRR4302533.910501/94‑1 (MQ=60)
                                                                GCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTG                            <  SRR4302533.5083345/94‑1 (MQ=60)
                                                                GCTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTG                            <  SRR4302533.5782136/94‑1 (MQ=60)
                                                                 CTTACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGC                           <  SRR4302533.1571359/94‑1 (MQ=60)
                                                                   TACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTT                         <  SRR4302533.2133045/94‑1 (MQ=60)
                                                                   TACTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTT                         <  SRR4302533.4873517/94‑1 (MQ=60)
                                                                     CTGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTT                       <  SRR4302533.1815899/94‑1 (MQ=60)
                                                                      TGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTT                      <  SRR4302533.6076002/94‑1 (MQ=60)
                                                                      TGAGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTT                      <  SRR4302533.3647065/94‑1 (MQ=60)
                                                                        AGGATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTT                    <  SRR4302533.248698/94‑1 (MQ=60)
                                                                           ATTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAA                 <  SRR4302533.5671606/94‑1 (MQ=60)
                                                                            TTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAAT                <  SRR4302533.5376130/94‑1 (MQ=60)
                                                                            TTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAAT                <  SRR4302533.5120241/94‑1 (MQ=60)
                                                                            TTTTCATTCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAAT                <  SRR4302533.1470455/94‑1 (MQ=60)
                                                                                   TCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAG         <  SRR4302533.1135978/94‑1 (MQ=60)
                                                                                   TCGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAG         <  SRR4302533.5071409/94‑1 (MQ=60)
                                                                                    CGAAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGA        <  SRR4302533.1480302/94‑1 (MQ=60)
                                                                                      AAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAAT      <  SRR4302533.5943159/94‑1 (MQ=60)
                                                                                      AAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAAT      <  SRR4302533.1701592/94‑1 (MQ=60)
                                                                                      AAAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAAT      <  SRR4302533.3444691/94‑1 (MQ=60)
                                                                                       AAATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAATT     <  SRR4302533.5635767/94‑1 (MQ=60)
                                                                                        AATACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAATTT    <  SRR4302533.6261265/94‑1 (MQ=60)
                                                                                          TACGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAATTTTG  <  SRR4302533.4177839/94‑1 (MQ=60)
                                                                                            |                                                                                           
AGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAATTTTG  >  NC_000913/3755425‑3755608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑