Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,787,263	C→G	G149A (GGC→GCC)	yibD ←	putative regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,787,263	0	C	G	100.0%	768.4 / NA	241	G149A (GGC→GCC)	yibD	putative regulator
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (123/118); total (123/118)

Only 100 of 256 total aligned reads displayed.

TTTTTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCAC  >  NC_000913/3787173‑3787352

 ttttAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCgg                                                                                        >  1:166041/1‑93 (MQ=255)

  tttAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGt                                                                                       >  2:14872/1‑93 (MQ=255)

  tttAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGt                                                                                       <  1:2412567/93‑1 (MQ=255)

     aaCAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTaa                                                                                    <  2:5670001/93‑1 (MQ=255)

     aaCAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGATaa                                                                                    >  1:6183586/1‑93 (MQ=255)

      aCAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAAt                                                                                   >  1:360162/1‑93 (MQ=255)

       cAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATa                                                                                  <  2:3791501/93‑1 (MQ=255)

       cAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCAAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATa                                                                                  <  1:6072157/93‑1 (MQ=255)

         aTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACg                                                                                >  2:2069218/1‑93 (MQ=255)

         aTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACg                                                                                >  2:2096441/1‑93 (MQ=255)

         aTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACg                                                                                >  2:2927073/1‑93 (MQ=255)

         aTAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACg                                                                                >  2:4351181/1‑93 (MQ=255)

          tAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGc                                                                               >  1:3832024/1‑93 (MQ=255)

          tAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGc                                                                               >  2:546706/1‑93 (MQ=255)

          tAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGc                                                                               <  2:586201/93‑1 (MQ=255)

          aaaCTTCACGGCGATAACCCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAACCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGc                                                                               <  2:4487890/92‑1 (MQ=255)

             cATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATGCGCCgg                                                                            <  2:1907246/93‑1 (MQ=255)

             cATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCgg                                                                            >  1:1062693/1‑93 (MQ=255)

                cACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTg                                                                         <  2:3063206/93‑1 (MQ=255)

                cACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTg                                                                         >  1:5962980/1‑93 (MQ=255)

                 aCGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCTCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGa                                                                        >  2:4386442/1‑93 (MQ=255)

                 aCGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGa                                                                        >  2:516111/1‑93 (MQ=255)

                 aCGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGa                                                                        <  1:6003537/93‑1 (MQ=255)

                  cGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAg                                                                       <  2:6042325/93‑1 (MQ=255)

                  cGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAg                                                                       >  1:4680107/1‑93 (MQ=255)

                   ggCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGc                                                                      >  2:2718503/1‑93 (MQ=255)

                   ggCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGc                                                                      >  2:1566860/1‑93 (MQ=255)

                    gCGATAAACCCCCATCCAGACAACGTGCGTCCAACGGCGCGAAGAAAGCCCCATCGGCAGCCAGTCCGGGGCGGTTAATACGCCGGCTGAGCg                                                                     >  1:475284/1‑93 (MQ=255)

                    gCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCg                                                                     >  2:5103360/1‑93 (MQ=255)

                     cGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGa                                                                    >  1:5005412/1‑93 (MQ=255)

                      gATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGaa                                                                   <  1:5475886/93‑1 (MQ=255)

                      gATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGaa                                                                   <  1:100643/93‑1 (MQ=255)

                       aTAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCGGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGTAg                                                                  >  2:1815469/1‑93 (MQ=255)

                       aTAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAg                                                                  <  1:6269481/93‑1 (MQ=255)

                        tAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAgg                                                                 >  2:2561473/1‑93 (MQ=255)

                           aCCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGa                                                              >  1:608113/1‑93 (MQ=255)

                           aCCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGa                                                              >  2:5769692/1‑93 (MQ=255)

                           aCCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGa                                                              >  2:725678/1‑93 (MQ=255)

                           aCCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCAGGGGCGGTTAATACGCCCGTTGAGCGAAGGCGa                                                              >  2:3371778/1‑93 (MQ=255)

                            cccccATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGAt                                                             >  2:579919/1‑93 (MQ=255)

                             ccccATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATc                                                            >  2:2189044/1‑93 (MQ=255)

                             ccccATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATAAGCCGGTTGAGCGAAGGCGATc                                                            >  1:4825777/1‑93 (MQ=255)

                              cccATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCg                                                           >  1:3519218/1‑93 (MQ=255)

                              cccATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCg                                                           >  2:5528110/1‑93 (MQ=255)

                               ccATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCgg                                                          <  1:4675528/93‑1 (MQ=255)

                               ccATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCgg                                                          <  2:6177003/93‑1 (MQ=255)

                                cATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCgat                                                         <  2:3973676/93‑3 (MQ=255)

                                 aTCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTg                                                        >  2:2879724/1‑93 (MQ=255)

                                  tCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTgg                                                       >  2:4237949/1‑93 (MQ=255)

                                  tCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTgg                                                       >  2:1703193/1‑93 (MQ=255)

                                   ccAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTggg                                                      >  1:2750634/1‑93 (MQ=255)

                                    cAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTgggg                                                     >  2:3537375/1‑93 (MQ=255)

                                      gACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGggat                                                   <  1:3941920/93‑1 (MQ=255)

                                       aCAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGggatg                                                  <  2:1322081/93‑1 (MQ=255)

                                       aCAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGggatg                                                  <  2:6214612/93‑1 (MQ=255)

                                        cAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGggatgg                                                 >  1:1944049/1‑93 (MQ=255)

                                        cAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGggatgg                                                 <  1:4241994/93‑1 (MQ=255)

                                         aaCGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGggatgga                                                <  1:409076/93‑1 (MQ=255)

                                          aCGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGggatggat                                               <  1:3208177/93‑1 (MQ=255)

                                            gTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTg                                             <  2:4008666/93‑1 (MQ=255)

                                            gTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTg                                             >  2:888151/1‑93 (MQ=255)

                                             tGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGc                                            >  2:2865455/1‑93 (MQ=255)

                                             tGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGc                                            <  2:2586189/93‑1 (MQ=255)

                                               actCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCa                                          <  1:1445625/91‑1 (MQ=255)

                                                gTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAg                                         >  2:5082406/1‑93 (MQ=255)

                                                 tCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAgg                                        >  1:5282066/1‑93 (MQ=255)

                                                 tCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAgg                                        >  1:2871870/1‑93 (MQ=255)

                                                  ccAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGt                                       <  1:97105/93‑1 (MQ=255)

                                                     aCGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTtc                                    >  2:5894633/1‑93 (MQ=255)

                                                      cGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTtct                                   <  1:460579/93‑1 (MQ=255)

                                                      cGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTtct                                   >  1:5174074/1‑93 (MQ=255)

                                                        gcgcGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTcc                                 >  1:1539397/1‑93 (MQ=255)

                                                         cgcgAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTccc                                <  2:2172701/93‑1 (MQ=255)

                                                             aagaaAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGttt                            >  2:239749/1‑93 (MQ=255)

                                                               gaaAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCa                          >  2:5329148/1‑93 (MQ=255)

                                                               gaaAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCa                          >  1:2563209/1‑93 (MQ=255)

                                                                aaaGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCAc                         >  1:4504214/1‑93 (MQ=255)

                                                                aaaGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCAc                         <  2:4699741/93‑1 (MQ=255)

                                                                 aaGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACg                        <  1:3857498/93‑1 (MQ=255)

                                                                 aaGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACg                        >  1:3547769/1‑93 (MQ=255)

                                                                   gCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGaa                      >  1:3690542/1‑93 (MQ=255)

                                                                    ccccATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGaaa                     <  2:3671311/93‑1 (MQ=255)

                                                                      ccATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAac                   <  1:2134752/93‑1 (MQ=255)

                                                                      ccATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAac                   >  1:1327714/1‑93 (MQ=255)

                                                                       cATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAaca                  >  2:756995/1‑93 (MQ=255)

                                                                         tCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACAcc                >  1:3294901/1‑93 (MQ=255)

                                                                            gCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGt             >  1:3100696/1‑93 (MQ=255)

                                                                              aGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCa           >  2:5632359/1‑93 (MQ=255)

                                                                              aGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCa           <  2:2758652/93‑1 (MQ=255)

                                                                                ccAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGc         >  2:1359380/1‑93 (MQ=255)

                                                                                    tCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGGGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTg     >  2:4556852/1‑93 (MQ=255)

                                                                                     ccGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGc    <  2:3193310/93‑1 (MQ=255)

                                                                                     ccGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGc    >  1:2620716/1‑93 (MQ=255)

                                                                                     ccGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGc    <  1:2926577/93‑1 (MQ=255)

                                                                                      cGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCa   <  1:682369/93‑1 (MQ=255)

                                                                                      cGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCa   <  1:1971609/93‑1 (MQ=255)

                                                                                      cGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCa   >  1:441576/1‑93 (MQ=255)

                                                                                      cGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCa   >  2:4953068/1‑93 (MQ=255)

                                                                                       ggggCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCAc  <  2:5546786/93‑1 (MQ=255)

                                                                                       ggggCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCAc  >  2:1047476/1‑93 (MQ=255)

TTTTTAACAATAACATCACGGCGATAAACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCAC  >  NC_000913/3787173‑3787352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTATTTTTAACAATAACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCACTGCG  >  NC_000913/3787170‑3787356

TTATTTTTAACAATAACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGG                                                                                               >  SRR4302533.4925907/1‑94 (MQ=60)

TTAGTTTTAACAATAACATCACGGCGATAAC‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGG                                                                                               <  SRR4302533.2205771/94‑1 (MQ=60)

   TTTTTAACAATAACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGG                                                                                            >  SRR4302533.167094/1‑94 (MQ=60)

     TTTAACAATAACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTT                                                                                          <  SRR4302533.2427469/94‑1 (MQ=60)

      TTAACAATAACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTA                                                                                         >  SRR4302533.249972/1‑94 (MQ=60)

       TAACAATAACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAA                                                                                        >  SRR4302533.883410/1‑94 (MQ=60)

       TAACAATAACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGATAA                                                                                        >  SRR4302533.6220713/1‑94 (MQ=60)

        AACAATAACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAAT                                                                                       >  SRR4302533.362352/1‑94 (MQ=60)

          CAATAACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATAC                                                                                     >  SRR4302533.4968574/1‑94 (MQ=60)

          CAATAACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATAC                                                                                     <  SRR4302533.1831754/94‑1 (MQ=60)

          CAATAACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCAAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATAC                                                                                     <  SRR4302533.6108892/94‑1 (MQ=60)

            ATAACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGC                                                                                   >  SRR4302533.3855448/1‑94 (MQ=60)

              AACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCG                                                                                 >  SRR4302533.4570351/1‑94 (MQ=60)

              AACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCG                                                                                 >  SRR4302533.2205856/1‑94 (MQ=60)

               ACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGG                                                                                <  SRR4302533.2583567/94‑1 (MQ=60)

               ACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGG                                                                                >  SRR4302533.1068939/1‑94 (MQ=60)

                CATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGT                                                                               >  SRR4302533.4706902/1‑94 (MQ=60)

                CATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGT                                                                               >  SRR4302533.2810114/1‑94 (MQ=60)

                  TCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTG                                                                             >  SRR4302533.5999054/1‑94 (MQ=60)

                  TCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTG                                                                             <  SRR4302533.2922263/94‑1 (MQ=60)

                   CACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGA                                                                            <  SRR4302533.3020900/94‑1 (MQ=60)

                    ACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAG                                                                           >  SRR4302533.395042/1‑94 (MQ=60)

                    ACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAG                                                                           <  SRR4302533.6039913/94‑1 (MQ=60)

                    ACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAG                                                                           >  SRR4302533.4708469/1‑94 (MQ=60)

                     CGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGC                                                                          <  SRR4302533.1482054/94‑1 (MQ=60)

                      GGCGATAAA‑CCCCCATCCAGACAACGTGCGTCCAACGGCGCGAAGAAAGCCCCATCGGCAGCCAGTCCGGGGCGGTTAATACGCCGGCTGAGCG                                                                         >  SRR4302533.478121/1‑94 (MQ=60)

                      GGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCG                                                                         >  SRR4302533.4589419/1‑94 (MQ=60)

                      GGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCG                                                                         <  SRR4302533.667167/94‑1 (MQ=60)

                      GGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCG                                                                         >  SRR4302533.4988151/1‑94 (MQ=60)

                       GCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGA                                                                        >  SRR4302533.5035745/1‑94 (MQ=60)

                        CGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAA                                                                       >  SRR4302533.2093694/1‑94 (MQ=60)

                         GATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAG                                                                      <  SRR4302533.5248880/94‑1 (MQ=60)

                         GATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAG                                                                      <  SRR4302533.101270/94‑1 (MQ=60)

                         GATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAG                                                                      <  SRR4302533.5508893/94‑1 (MQ=60)

                          ATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGG                                                                     <  SRR4302533.5287692/94‑1 (MQ=60)

                          ATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGG                                                                     <  SRR4302533.6306941/94‑1 (MQ=60)

                           TAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGC                                                                    <  SRR4302533.3271385/94‑1 (MQ=60)

                           TAAA‑CCCCCATCCAGACAACGCGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGC                                                                    >  SRR4302533.829690/1‑94 (MQ=60)

                            AAAGCCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAAAAGGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGC                                                                    <  SRR4302533.5480072/94‑1 (MQ=60)

                            AAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCG                                                                   <  SRR4302533.1086942/94‑1 (MQ=60)

                            AAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCG                                                                   >  SRR4302533.6292813/1‑94 (MQ=60)

                            AAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCG                                                                   >  SRR4302533.6186907/1‑94 (MQ=60)

                             AA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGA                                                                  >  SRR4302533.611690/1‑94 (MQ=60)

                                CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATC                                                                <  SRR4302533.3583374/94‑1 (MQ=60)

                                CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATC                                                                <  SRR4302533.1669893/94‑1 (MQ=60)

                                CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATAAGCCGGTTGAGCGAAGGCGATC                                                                >  SRR4302533.4855020/1‑94 (MQ=60)

                                 CCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCG                                                               >  SRR4302533.3540914/1‑94 (MQ=60)

                                  CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGG                                                              <  SRR4302533.3304093/94‑1 (MQ=60)

                                   CCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGT                                                             <  SRR4302533.4703863/94‑1 (MQ=60)

                                    CATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTG                                                            <  SRR4302533.3853129/94‑1 (MQ=60)

                                     ATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGG                                                           >  SRR4302533.4707475/1‑94 (MQ=60)

                                      TCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGG                                                          >  SRR4302533.2767499/1‑94 (MQ=60)

                                       CCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGG                                                         <  SRR4302533.4768890/94‑1 (MQ=60)

                                         AGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGAT                                                       <  SRR4302533.4795265/94‑1 (MQ=60)

                                          GACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATG                                                      <  SRR4302533.3965972/94‑1 (MQ=60)

                                          GACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATG                                                      <  SRR4302533.6025473/94‑1 (MQ=60)

                                          GACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATG                                                      >  SRR4302533.3148842/1‑94 (MQ=60)

                                           ACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGG                                                     >  SRR4302533.1955908/1‑94 (MQ=60)

                                           ACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGG                                                     >  SRR4302533.3552989/1‑94 (MQ=60)

                                            CAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGA                                                    <  SRR4302533.4267609/94‑1 (MQ=60)

                                             AACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGAT                                                   <  SRR4302533.4795784/94‑1 (MQ=60)

                                             AACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGAT                                                   >  SRR4302533.2006765/1‑94 (MQ=60)

                                             AACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGAT                                                   <  SRR4302533.411530/94‑1 (MQ=60)

                                              ACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATT                                                  <  SRR4302533.3227934/94‑1 (MQ=60)

                                              ACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATT                                                  <  SRR4302533.437888/94‑1 (MQ=60)

                                               CGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTG                                                 <  SRR4302533.1470681/94‑1 (MQ=60)

                                               CGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTG                                                 <  SRR4302533.3891439/94‑1 (MQ=60)

                                               CGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTG                                                 >  SRR4302533.4088641/1‑94 (MQ=60)

                                                GTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGC                                                >  SRR4302533.431366/1‑94 (MQ=60)

                                                 GGAGTCGAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCC                                               <  SRR4302533.3693967/94‑1 (MQ=60)

                                                  GAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCA                                              <  SRR4302533.6050858/94‑1 (MQ=60)

                                                   AGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAG                                             <  SRR4302533.3334998/94‑1 (MQ=60)

                                                   ACTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAG                                             <  SRR4302533.1454349/94‑1 (MQ=60)

                                                    GTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGG                                            >  SRR4302533.5313713/1‑94 (MQ=60)

                                                    GTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGG                                            >  SRR4302533.2889541/1‑94 (MQ=60)

                                                    GTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGG                                            >  SRR4302533.5609182/1‑94 (MQ=60)

                                                    GTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGAGGGGATGGATTGCCAGG                                            >  SRR4302533.4066962/1‑94 (MQ=60)

                                                     TCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGT                                           >  SRR4302533.4225144/1‑94 (MQ=60)

                                                      CCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTT                                          <  SRR4302533.97710/94‑1 (MQ=60)

                                                        AACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTC                                        >  SRR4302533.2665198/1‑94 (MQ=60)

                                                         ACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCT                                       >  SRR4302533.5205329/1‑94 (MQ=60)

                                                          CGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTC                                      <  SRR4302533.463329/94‑1 (MQ=60)

                                                           GGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCC                                     >  SRR4302533.1548668/1‑94 (MQ=60)

                                                            GCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCC                                    >  SRR4302533.6053259/1‑94 (MQ=60)

                                                             CGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCG                                   <  SRR4302533.2780826/94‑1 (MQ=60)

                                                                GAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTT                                <  SRR4302533.6111909/94‑1 (MQ=60)

                                                                GAAGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTT                                <  SRR4302533.4686732/94‑1 (MQ=60)

                                                                  AGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCA                              <  SRR4302533.3475707/94‑1 (MQ=60)

                                                                  AGAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCA                              >  SRR4302533.2578988/1‑94 (MQ=60)

                                                                   GAAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCAC                             >  SRR4302533.4531499/1‑94 (MQ=60)

                                                                    AAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACG                            >  SRR4302533.3767280/1‑94 (MQ=60)

                                                                    AAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACG                            >  SRR4302533.3569634/1‑94 (MQ=60)

                                                                    AAAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACG                            <  SRR4302533.5056121/94‑1 (MQ=60)

                                                                     AAGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGA                           <  SRR4302533.3881051/94‑1 (MQ=60)

                                                                      AGCCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAA                          >  SRR4302533.3713216/1‑94 (MQ=60)

                                                                        CCCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAA                        >  SRR4302533.5349598/1‑94 (MQ=60)

                                                                         CCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAAC                       >  SRR4302533.1019946/1‑94 (MQ=60)

                                                                         CCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAAC                       <  SRR4302533.1172209/94‑1 (MQ=60)

                                                                         CCCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAAC                       >  SRR4302533.1335682/1‑94 (MQ=60)

                                                                          CCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACA                      <  SRR4302533.2147915/94‑1 (MQ=60)

                                                                          CCATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACA                      >  SRR4302533.3858534/1‑94 (MQ=60)

                                                                            ATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACC                    >  SRR4302533.3315236/1‑94 (MQ=60)

                                                                            ATCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACC                    <  SRR4302533.2587406/94‑1 (MQ=60)

                                                                             TCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCA                   <  SRR4302533.6169708/94‑1 (MQ=60)

                                                                             TCCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCA                   <  SRR4302533.2974890/94‑1 (MQ=60)

                                                                              CCGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAG                  <  SRR4302533.1403140/94‑1 (MQ=60)

                                                                               CGCAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGT                 >  SRR4302533.3119757/1‑94 (MQ=60)

                                                                                 CAGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCA               <  SRR4302533.6248112/94‑1 (MQ=60)

                                                                                  AGCCAGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAG              <  SRR4302533.4521058/94‑1 (MQ=60)

                                                                                      AGTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTT          >  SRR4302533.3604595/1‑94 (MQ=60)

                                                                                       GTCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTG         <  SRR4302533.5638810/94‑1 (MQ=60)

                                                                                        TCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGC        >  SRR4302533.2402408/1‑94 (MQ=60)

                                                                                        TCCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGC        >  SRR4302533.2636802/1‑94 (MQ=60)

                                                                                         CCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCA       >  SRR4302533.444216/1‑94 (MQ=60)

                                                                                         CCGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCA       <  SRR4302533.2944481/94‑1 (MQ=60)

                                                                                          CGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCAC      <  SRR4302533.1983674/94‑1 (MQ=60)

                                                                                          CGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCAC      <  SRR4302533.686404/94‑1 (MQ=60)

                                                                                          CGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCAC      >  SRR4302533.1848068/1‑94 (MQ=60)

                                                                                          CGGGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCAC      <  SRR4302533.1983675/94‑1 (MQ=60)

                                                                                            GGGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCACTG    <  SRR4302533.5915677/94‑1 (MQ=60)

                                                                                             GGCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCACTGC   <  SRR4302533.525610/94‑1 (MQ=60)

                                                                                              GCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCACTGCG  >  SRR4302533.3541880/1‑94 (MQ=60)

TTATTTTTAACAATAACATCACGGCGATAAA‑CCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCACTGCG  >  NC_000913/3787170‑3787356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`